Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000735.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

106004 .. 107441

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000735.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggatgacccacagaagctgaagaagatagaggcggcagcttacgactacgagaacgacccgggatgggccgactactgggccaaaatcatcatccctcttcacatggcctctaaccccgacgccgacgagctggacgagttggagtgccaagtcaccgaaatggcggtgaagattcaagagtaccgagccactgtaccggagcagctcaagaacacgctaccttccattatcgaagctcagagaccagtttcggctgatgggtcagagcctgggacgtccggggatccgaattcggggggactagcagtcgggttccagaatggggcagaccattcgccttcaagtttgaaggtgggacatgttccctacattgtctgccttagaagagctaatatcgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.56

Weight (kDa)

4.55

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	281
AciI	CCGC	2 cut(s)	35, 167
AclWI	GGATC	2 cut(s)	281, 294
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	123, 278
AfaI	GTAC	2 cut(s)	185, 198
AfiI	CCNNNNNNNGG	4 cut(s)	67, 78, 296, 325
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	179, 345, 352
AhdI	GACNNNNNGTC	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	6 cut(s)	19, 41, 133, 208, 239, 392
AluI	AGCT	6 cut(s)	19, 41, 133, 208, 239, 392
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	281, 294
AlwNI	CAGNNNCTG	2 cut(s)	19, 272
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	69, 81, 108
ApeKI	GCWGC	2 cut(s)	38, 205
ApoI	RAATTY	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	69, 81
AsuC2I	CCSGG	3 cut(s)	62, 63, 283
AsuHPI	GGTGA	2 cut(s)	148, 181
AvaI	CYCGRG	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	50, 217
BccI	CCATC	2 cut(s)	60, 254
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	3 cut(s)	62, 63, 283
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	3 cut(s)	36, 39, 206
BlsI	GCNGC	3 cut(s)	37, 40, 207
Bme1390I	CCNGG	4 cut(s)	62, 63, 273, 283
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	69, 81
BmiI	GGNNCC	2 cut(s)	288, 317
BmrFI	CCNGG	4 cut(s)	62, 63, 273, 283
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	3 cut(s)	62, 63, 283
BsaHI	GRCGYC	2 cut(s)	123, 278
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	61, 272, 282
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 78, 296, 325
Bse1I	ACTGG	2 cut(s)	83, 248
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	61, 272, 282
BseGI	GGATG	3 cut(s)	10, 71, 93
BseLI	CCNNNNNNNGG	4 cut(s)	67, 78, 296, 325
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	83, 248
BseXI	GCAGC	2 cut(s)	50, 217
BshFI	GGCC	3 cut(s)	71, 83, 110
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	62, 200, 282
BslFI	GGGAC	3 cut(s)	289, 315, 372
BslI	CCNNNNNNNGG	4 cut(s)	67, 78, 296, 325
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	3 cut(s)	289, 315, 372
BsnI	GGCC	3 cut(s)	71, 83, 110
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	35, 167
BspANI	GGCC	3 cut(s)	71, 83, 110
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	288, 317
BspPI	GGATC	2 cut(s)	281, 294
BspQI	GCTCTTC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	83, 248
BssECI	CCNNGG	3 cut(s)	61, 272, 282
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	2 cut(s)	123, 278
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	105, 382
BstACI	GRCGYC	2 cut(s)	123, 278
BstDEI	CTNAG	2 cut(s)	240, 383
BstF5I	GGATG	3 cut(s)	10, 71, 93
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	4 cut(s)	60, 61, 271, 281
BstV1I	GCAGC	2 cut(s)	50, 217
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	71, 83, 110
BtsCI	GGATG	3 cut(s)	10, 71, 93
BtsIMutI	CAGTG	1 cut(s)	192
CaiI	CAGNNNCTG	2 cut(s)	19, 272
Cfr13I	GGNCC	2 cut(s)	69, 81
Cfr9I	CCCGGG	1 cut(s)	61
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	184, 197
CviAII	CATG	2 cut(s)	106, 362
CviQI	GTAC	2 cut(s)	184, 197
DdeI	CTNAG	2 cut(s)	240, 383
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	105, 382
Eam1105I	GACNNNNNGTC	1 cut(s)	308
EarI	CTCTTC	2 cut(s)	105, 382
Eco31I	GGTCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	109, 365
FaiI	YATR	2 cut(s)	107, 363
FaqI	GGGAC	3 cut(s)	289, 315, 372
FatI	CATG	2 cut(s)	105, 361
Fnu4HI	GCNGC	3 cut(s)	36, 39, 206
FokI	GGATG	3 cut(s)	17, 78, 80
Fsp4HI	GCNGC	3 cut(s)	36, 39, 206
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	3 cut(s)	36, 39, 206
HaeIII	GGCC	3 cut(s)	71, 83, 110
HapII	CCGG	3 cut(s)	62, 200, 282
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	123, 278
Hin1II	CATG	2 cut(s)	109, 365
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	3 cut(s)	62, 200, 282
HphI	GGTGA	2 cut(s)	148, 181
Hpy188I	TCNGA	3 cut(s)	243, 268, 291
Hpy188III	TCNNGA	3 cut(s)	179, 211, 319
Hpy99I	CGWCG	2 cut(s)	125, 131
HpyAV	CCTTC	3 cut(s)	234, 346, 351
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	240, 383
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	2 cut(s)	123, 278
Hsp92II	CATG	2 cut(s)	109, 365
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	9 cut(s)	64, 75, 119, 213, 258, 261, 285, 295, 332
Lsp1109I	GCAGC	2 cut(s)	50, 217
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	5 cut(s)	34, 37, 92, 184, 399
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	25, 108, 121
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	3 cut(s)	62, 200, 282
MspR9I	CCNGG	4 cut(s)	62, 63, 273, 283
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	3 cut(s)	62, 63, 283
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	109, 365
NlaIV	GGNNCC	2 cut(s)	288, 317
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	37, 40, 207
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	288, 317
PspPI	GGNCC	2 cut(s)	69, 81
PstNI	CAGNNNCTG	2 cut(s)	19, 272
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	185, 198
RsaNI	GTAC	2 cut(s)	184, 197
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	382
SatI	GCNGC	3 cut(s)	36, 39, 206
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	69, 81
ScrFI	CCNGG	4 cut(s)	62, 63, 273, 283
SetI	ASST	9 cut(s)	21, 43, 135, 210, 226, 241, 281, 357, 394
SmaI	CCCGGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	35, 167
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	60, 61, 271, 281
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	292
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	38, 205
Tsp45I	GTSAC	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	61
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	365
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.