Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

19454424 .. 19454956

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG104000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAGAAGATAGCGACGGCGGCTTACGACTACAAGAACGACCCGAGATGGGTCGACTACTGGGCCAACATCCTCATCTCTCCTCACATGGCCTCCAGCCCAGACGCCGACGAGCTGGACGAGTTGGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGTGTACCGAGCCATTGTACCGGAGCAGCTCAAAAACACGCTGCCTTCCATTATCGAAGATCAGAGACCCGTTTCGGCTGATGGGTCGGAGCCTGTGACGTCCGGGGATCCGAATTCGGGTAAAGTGAGGAAAATTGTGGGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

4.73

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	3 cut(s)	20, 149, 303
AclWI	GGATC	2 cut(s)	263, 276
AcsI	RAATTY	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	105, 260
AfaI	GTAC	2 cut(s)	167, 180
AfiI	CCNNNNNNNGG	2 cut(s)	49, 278
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	2 cut(s)	263, 276
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	63, 90
ApeKI	GCWGC	2 cut(s)	187, 202
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	130, 163
AvaI	CYCGRG	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	189, 199
BccI	CCATC	2 cut(s)	42, 236
BceAI	ACGGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	21, 188, 203
BlsI	GCNGC	3 cut(s)	22, 189, 204
Bme1390I	CCNGG	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	252, 270
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	2 cut(s)	105, 260
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 278
Bse1I	ACTGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	49, 278
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	189, 199
BshFI	GGCC	2 cut(s)	65, 92
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	182, 264
BslI	CCNNNNNNNGG	2 cut(s)	49, 278
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	65, 92
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	220, 268
BspACI	CCGC	3 cut(s)	20, 149, 303
BspANI	GGCC	2 cut(s)	65, 92
BspLI	GGNNCC	2 cut(s)	252, 270
BspPI	GGATC	2 cut(s)	263, 276
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	220, 268
BssNI	GRCGYC	2 cut(s)	105, 260
BstACI	GRCGYC	2 cut(s)	105, 260
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	223, 271
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	220, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	189, 199
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	65, 92
BtsCI	GGATG	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	166, 179
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	23, 65, 92, 99, 115, 173, 190, 239, 253
CviKI_1	RGCY	9 cut(s)	23, 65, 92, 99, 115, 173, 190, 239, 253
CviQI	GTAC	2 cut(s)	166, 179
DpnI	GATC	2 cut(s)	222, 270
DpnII	GATC	2 cut(s)	220, 268
Eco31I	GGTCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	21, 188, 203
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	21, 188, 203
GluI	GCNGC	3 cut(s)	21, 188, 203
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	65, 92
HapII	CCGG	2 cut(s)	182, 264
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	105, 260
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	182, 264
HphI	GGTGA	2 cut(s)	130, 163
Hpy166II	GTNNAC	2 cut(s)	55, 166
Hpy188I	TCNGA	3 cut(s)	225, 250, 273
Hpy8I	GTNNAC	2 cut(s)	55, 166
Hpy99I	CGWCG	2 cut(s)	19, 113
HpyAV	CCTTC	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	105, 260
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	220, 268
LmnI	GCTCC	2 cut(s)	184, 250
LpnPI	CCDG	7 cut(s)	46, 101, 109, 114, 195, 267, 277
Lsp1109I	GCAGC	2 cut(s)	189, 199
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	136, 256
MalI	GATC	2 cut(s)	222, 270
MboI	GATC	2 cut(s)	220, 268
MboII	GAAGA	4 cut(s)	16, 19, 166, 230
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	274, 294
MmeI	TCCRAC	2 cut(s)	105, 228
MnlI	CCTC	4 cut(s)	83, 93, 103, 282
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	2 cut(s)	182, 264
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	220, 268
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	252, 270
NmuCI	GTSAC	2 cut(s)	136, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	22, 189, 204
PspN4I	GGNNCC	2 cut(s)	252, 270
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	167, 180
RsaNI	GTAC	2 cut(s)	166, 179
RseI	CAYNNNNRTG	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	3 cut(s)	21, 188, 203
Sau3AI	GATC	2 cut(s)	220, 268
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	3 cut(s)	117, 192, 263
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	274, 294
SsiI	CCGC	3 cut(s)	20, 149, 303
StyD4I	CCNGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	54, 216
TasI	AATT	2 cut(s)	274, 294
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	136, 256
TseI	GCWGC	2 cut(s)	187, 202
Tsp45I	GTSAC	2 cut(s)	136, 256
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.