Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

285393 .. 285701

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000065.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ctgaaaacggacgacccacagaagctgaagaagatagcggcggcggcttacaactacgagaacgacccgagatgggccgactactgggccaacatcctcatccctcctcacatggcctctagccccgacgccgacaagctggacgagttggagtgccaagtcaccgaaatggcgatgaagattcaagagtacctagccactgtaccagagcagctcaagaacacgctgccttccattatcgaagctcatagacccgtttcggctgatgggtccggagcttgggacgtccggggatccaaattcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

5.06

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	3 cut(s)	38, 41, 44
AclWI	GGATC	2 cut(s)	288, 301
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	129, 285
AfaI	GTAC	2 cut(s)	191, 204
AfiI	CCNNNNNNNGG	3 cut(s)	73, 84, 279
AgsI	TTSAA	2 cut(s)	185, 304
AluBI	AGCT	5 cut(s)	25, 139, 214, 245, 278
AluI	AGCT	5 cut(s)	25, 139, 214, 245, 278
AlwI	GGATC	2 cut(s)	288, 301
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	3 cut(s)	75, 87, 114
ApeKI	GCWGC	2 cut(s)	211, 226
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	75, 87, 270
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	213, 223
BccI	CCATC	2 cut(s)	66, 260
BcnI	CCSGG	1 cut(s)	290
BfaI	CTAG	2 cut(s)	120, 194
BisI	GCNGC	5 cut(s)	39, 42, 45, 212, 227
BlsI	GCNGC	5 cut(s)	40, 43, 46, 213, 228
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	75, 87, 270
BmiI	GGNNCC	2 cut(s)	271, 295
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	290
BsaHI	GRCGYC	2 cut(s)	129, 285
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 84, 279
Bse1I	ACTGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	93, 99
BseLI	CCNNNNNNNGG	3 cut(s)	73, 84, 279
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	213, 223
BshFI	GGCC	3 cut(s)	77, 89, 116
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	273, 289
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	73, 84, 279
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	77, 89, 116
BsoBI	CYCGRG	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	3 cut(s)	38, 41, 44
BspANI	GGCC	3 cut(s)	77, 89, 116
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	271, 295
BspPI	GGATC	2 cut(s)	288, 301
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	293
BssNI	GRCGYC	2 cut(s)	129, 285
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	2 cut(s)	129, 285
BstF5I	GGATG	2 cut(s)	93, 99
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	213, 223
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	77, 89, 116
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	93, 99
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	75, 87, 270
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	190, 203
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	2 cut(s)	190, 203
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	67
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 249
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	39, 42, 45, 212, 227
FokI	GGATG	2 cut(s)	80, 86
Fsp4HI	GCNGC	5 cut(s)	39, 42, 45, 212, 227
FspBI	CTAG	2 cut(s)	120, 194
GluI	GCNGC	5 cut(s)	39, 42, 45, 212, 227
HaeIII	GGCC	3 cut(s)	77, 89, 116
HapII	CCGG	2 cut(s)	273, 289
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	129, 285
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	273, 289
HphI	GGTGA	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	185, 217, 273
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	2 cut(s)	129, 285
Hsp92II	CATG	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	5 cut(s)	70, 125, 219, 286, 302
Lsp1109I	GCAGC	2 cut(s)	213, 223
MaeI	CTAG	2 cut(s)	120, 194
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	3 cut(s)	40, 43, 190
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	107, 114, 117, 127
MroI	TCCGGA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	273, 289
MspR9I	CCNGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	271, 295
NmuCI	GTSAC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	40, 43, 46, 213, 228
PspN4I	GGNNCC	2 cut(s)	271, 295
PspPI	GGNCC	3 cut(s)	75, 87, 270
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	2 cut(s)	191, 204
RsaNI	GTAC	2 cut(s)	190, 203
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	5 cut(s)	39, 42, 45, 212, 227
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	3 cut(s)	75, 87, 270
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	7 cut(s)	27, 141, 195, 216, 247, 280, 288
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	3 cut(s)	38, 41, 44
SspMI	CTAG	2 cut(s)	120, 194
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	299
TauI	GCSGC	3 cut(s)	41, 44, 47
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	211, 226
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	299
XspI	CTAG	2 cut(s)	120, 194
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.