RLG00000036631

Transmembrane protein 33 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001886
Physical Location & Seq
Reverse (-)
82731872 .. 82732333
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036631

Sequence Viewer

Length: 333 bp
ATGCACCTCGCCCCGCCAACTCCCCTTCCTTCGAGTCCACCTCCGCCTTCCTCTCCTGCTTCCCCATCTCTAATCCGATCATCGCTGAAAACGGACGACCCACAGAAGCTGAAGAAGATAGCGGCGGCGGCTTACGACTACGAGAATGACCCGAGATGGGCCGACTACTGGGCCAACATCCTCATCCCTCCTCACATGGCCTCTAGCCCCGATGCCGACGAGCTGGACGAGTTGGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGAGTACCAAGCCACTGTACTGGAGCAGCTCAAGAACACGCTGCCTTCCATTATCGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

111

Amino Acids

12.11

Weight (kDa)

4.49

Isoelectric Point (pI)

79.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 14, 44, 122, 125, 128, 257
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 275, 288
AfiI CCNNNNNNNGG 2 cut(s) 157, 168
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 4 cut(s) 109, 223, 298, 329
AluI AGCT 4 cut(s) 109, 223, 298, 329
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 3 cut(s) 159, 171, 198
ApeKI GCWGC 2 cut(s) 295, 310
AspS9I GGNCC 2 cut(s) 159, 171
AsuHPI GGTGA 2 cut(s) 238, 271
AvaI CYCGRG 1 cut(s) 151
BbvI GCAGC 2 cut(s) 297, 307
BccI CCATC 2 cut(s) 73, 150
BfaI CTAG 1 cut(s) 204
BisI GCNGC 5 cut(s) 123, 126, 129, 296, 311
BlsI GCNGC 5 cut(s) 124, 127, 130, 297, 312
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 159, 171
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 168
Bse1I ACTGG 2 cut(s) 173, 294
BseGI GGATG 2 cut(s) 177, 183
BseLI CCNNNNNNNGG 2 cut(s) 157, 168
BseNI ACTGG 2 cut(s) 173, 294
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 297, 307
BshFI GGCC 3 cut(s) 161, 173, 200
BsiHKCI CYCGRG 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 157, 168
BsnI GGCC 3 cut(s) 161, 173, 200
BsoBI CYCGRG 1 cut(s) 151
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 6 cut(s) 14, 44, 122, 125, 128, 257
BspANI GGCC 3 cut(s) 161, 173, 200
BsrI ACTGG 2 cut(s) 173, 294
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 177, 183
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 297, 307
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 3 cut(s) 161, 173, 200
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 177, 183
BtsIMutI CAGTG 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 159, 171
Csp6I GTAC 2 cut(s) 274, 287
CviAII CATG 1 cut(s) 196
CviQI GTAC 2 cut(s) 274, 287
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 151
FaeI CATG 1 cut(s) 199
FaiI YATR 1 cut(s) 197
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 123, 126, 129, 296, 311
FokI GGATG 2 cut(s) 164, 170
Fsp4HI GCNGC 5 cut(s) 123, 126, 129, 296, 311
FspBI CTAG 1 cut(s) 204
GluI GCNGC 5 cut(s) 123, 126, 129, 296, 311
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 161, 173, 200
Hin1II CATG 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 2 cut(s) 34, 265
HphI GGTGA 2 cut(s) 238, 271
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 269, 301
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 35, 39, 57, 324
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 69, 154, 209, 275
Lsp1109I GCAGC 2 cut(s) 297, 307
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 3 cut(s) 124, 127, 274
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 17, 51, 61, 191, 198, 201, 211
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 77
NlaIII CATG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 5 cut(s) 124, 127, 130, 297, 312
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 159, 171
PstNI CAGNNNCTG 1 cut(s) 109
RsaI GTAC 2 cut(s) 275, 288
RsaNI GTAC 2 cut(s) 274, 287
RseI CAYNNNNRTG 1 cut(s) 251
SatI GCNGC 5 cut(s) 123, 126, 129, 296, 311
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 159, 171
SchI GAGTC 1 cut(s) 43
SetI ASST 6 cut(s) 9, 43, 111, 225, 300, 331
SfaNI GCATC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SsiI CCGC 6 cut(s) 14, 44, 122, 125, 128, 257
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 32, 324
TatI WGTACW 1 cut(s) 286
TauI GCSGC 3 cut(s) 125, 128, 131
TfiI GAWTC 1 cut(s) 265
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 295, 310
Tsp45I GTSAC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 289
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.