Rh6DG072400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001886
Physical Location & Seq
Forward (+)
7746369 .. 7746590
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG072400.1

Sequence Viewer

Length: 222 bp
ATGACCTCTAGCCCCGACGCCGACGAGCTAGATGAGTTGGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGAGTACCGAGCCACTGTACCAGAGCAGCTCAAGAACACGCTACCTTCCATTATCGAAGCTCAGAGACCCGTTTCGGCTGATGGGTCGGAGCCTAGGACGTCTGGGGATCCAAATTCGGGTAAAGGTCTTTGCTTTTTAGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.86

Weight (kDa)

4.25

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
AciI CCGC 1 cut(s) 62
AclWI GGATC 2 cut(s) 176, 189
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 18, 173
AfaI GTAC 2 cut(s) 80, 93
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 3 cut(s) 28, 103, 134
AluI AGCT 3 cut(s) 28, 103, 134
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 176, 189
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 187
AspA2I CCTAGG 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 43, 76
AvrII CCTAGG 1 cut(s) 167
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 9, 29, 168
BisI GCNGC 1 cut(s) 101
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 165, 183
BpuEI CTTGAG 1 cut(s) 89
BsaHI GRCGYC 2 cut(s) 18, 173
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 165, 183
BspPI GGATC 2 cut(s) 176, 189
BspTNI GGTCTC 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 2 cut(s) 18, 173
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 2 cut(s) 18, 173
BstDEI CTNAG 1 cut(s) 135
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 87
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 79, 92
CviJI RGCY 7 cut(s) 12, 28, 86, 103, 134, 152, 166
CviKI_1 RGCY 7 cut(s) 12, 28, 86, 103, 134, 152, 166
CviQI GTAC 2 cut(s) 79, 92
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 3 cut(s) 9, 29, 168
GluI GCNGC 1 cut(s) 101
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 2 cut(s) 18, 173
HinfI GANTC 1 cut(s) 70
HphI GGTGA 2 cut(s) 43, 76
Hpy188I TCNGA 2 cut(s) 138, 163
Hpy188III TCNNGA 2 cut(s) 74, 106
Hpy99I CGWCG 2 cut(s) 20, 26
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 2 cut(s) 18, 173
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 2 cut(s) 108, 162
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 3 cut(s) 9, 29, 168
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 181
MluCI AATT 1 cut(s) 187
MmeI TCCRAC 2 cut(s) 18, 141
MnlI CCTC 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 56
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 165, 183
NmuCI GTSAC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 165, 183
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 80, 93
RsaNI GTAC 2 cut(s) 79, 92
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 181
SetI ASST 8 cut(s) 8, 30, 105, 121, 136, 176, 202, 217
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 62
SspMI CTAG 3 cut(s) 9, 29, 168
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 3 cut(s) 9, 29, 168
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.