Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000724.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

69449 .. 69997

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000724.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ctgccgccaacttctccgacccctccccttccttcgagtccacctccaccttcctttcttgcttccccatctccaagtcctccgtcaactcccaagtggactcaccgatcccactcacctcaaacccttcctcgaccaaacctccgcctccatctccgacctcgagaagctagtcgccgagaactcctactcccctcgtacaaagtccgatcgtcgctgaaaacgaacgacccacagaagctgaagaagatagaagcagcggcttacgactacgagaacgacccgagatgggccgactactggaccaacatcctcatccctcctcacatggcatttagcctcgacgccgacgagttggacgagttggagtgccaagtcaccgaaatggcggtgaagattcaagagttccgagccactgtaccggagcagctcaagaacacgttgccttccattatcgaagctcagagacccgtttcaactgatgggttgaagcctgggacgtccggggatcctaattcgggtaaaggtctgtgttttttgggttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

182

Amino Acids

20.21

Weight (kDa)

7.9

Isoelectric Point (pI)

70.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AciI	CCGC	4 cut(s)	5, 145, 260, 389
AclWI	GGATC	3 cut(s)	102, 503, 516
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	345, 500
AfaI	GTAC	2 cut(s)	200, 420
AfiI	CCNNNNNNNGG	3 cut(s)	289, 300, 518
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	401, 477, 490
AjnI	CCWGG	1 cut(s)	493
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	4 cut(s)	170, 241, 430, 461
AluI	AGCT	4 cut(s)	170, 241, 430, 461
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	3 cut(s)	102, 503, 516
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	2 cut(s)	162, 283
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	257, 427
AspS9I	GGNCC	2 cut(s)	291, 303
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	4 cut(s)	95, 108, 370, 403
AvaI	CYCGRG	2 cut(s)	162, 283
AvaII	GGWCC	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	269, 439
BccI	CCATC	4 cut(s)	76, 159, 282, 476
BciT130I	CCWGG	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	4 cut(s)	5, 258, 261, 428
BlsI	GCNGC	4 cut(s)	6, 259, 262, 429
Bme1390I	CCNGG	2 cut(s)	495, 505
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	2 cut(s)	162, 283
BmgT120I	GGNCC	2 cut(s)	291, 303
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	2 cut(s)	495, 505
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	505
BsaHI	GRCGYC	2 cut(s)	345, 500
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	494, 504
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	4 cut(s)	126, 156, 174, 204
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 300, 518
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	494, 504
BseGI	GGATG	2 cut(s)	309, 315
BseLI	CCNNNNNNNGG	3 cut(s)	289, 300, 518
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	269, 439
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	212
BsiHKCI	CYCGRG	2 cut(s)	162, 283
BsiSI	CCGG	2 cut(s)	422, 504
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	3 cut(s)	289, 300, 518
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	460
BsoBI	CYCGRG	2 cut(s)	162, 283
Bsp143I	GATC	3 cut(s)	107, 209, 508
BspACI	CCGC	4 cut(s)	5, 145, 260, 389
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	102, 503, 516
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	494, 504
BssMI	GATC	3 cut(s)	107, 209, 508
BssNI	GRCGYC	2 cut(s)	345, 500
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	418
BstACI	GRCGYC	2 cut(s)	345, 500
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	309, 315
BstKTI	GATC	3 cut(s)	110, 212, 511
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	3 cut(s)	107, 209, 508
BstMCI	CGRYCG	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	493, 503
BstV1I	GCAGC	2 cut(s)	269, 439
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	309, 315
BtsIMutI	CAGTG	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	291, 303
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	199, 419
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	9 cut(s)	170, 241, 263, 293, 339, 413, 430, 461, 493
CviKI_1	RGCY	9 cut(s)	170, 241, 263, 293, 339, 413, 430, 461, 493
CviQI	GTAC	2 cut(s)	199, 419
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	109, 211, 510
DpnII	GATC	3 cut(s)	107, 209, 508
EciI	GGCGGA	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	2 cut(s)	162, 283
EcoRII	CCWGG	1 cut(s)	493
FaeI	CATG	1 cut(s)	331
FaiI	YATR	1 cut(s)	329
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	5, 258, 261, 428
FokI	GGATG	2 cut(s)	296, 302
Fsp4HI	GCNGC	4 cut(s)	5, 258, 261, 428
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	4 cut(s)	5, 258, 261, 428
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	422, 504
HgaI	GACGC	1 cut(s)	353
Hin1I	GRCGYC	2 cut(s)	345, 500
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	37, 100, 397
HpaII	CCGG	2 cut(s)	422, 504
HphI	GGTGA	4 cut(s)	95, 108, 370, 403
Hpy166II	GTNNAC	3 cut(s)	41, 87, 99
Hpy188I	TCNGA	5 cut(s)	18, 158, 209, 410, 465
Hpy188III	TCNNGA	3 cut(s)	164, 401, 433
Hpy8I	GTNNAC	3 cut(s)	41, 87, 99
Hpy99I	CGWCG	3 cut(s)	217, 347, 353
HpyAV	CCTTC	5 cut(s)	38, 42, 60, 137, 456
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	440, 500
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	2 cut(s)	440, 500
Hsp92I	GRCGYC	2 cut(s)	345, 500
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	107, 209, 508
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	5 cut(s)	286, 435, 480, 507, 517
Lsp1109I	GCAGC	2 cut(s)	269, 439
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	440, 500
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	109, 211, 510
MboI	GATC	3 cut(s)	107, 209, 508
MboII	GAAGA	3 cut(s)	256, 259, 406
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	46, 94
MmeI	TCCRAC	4 cut(s)	41, 181, 336, 345
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	422, 504
MspR9I	CCNGG	2 cut(s)	495, 505
MvaI	CCWGG	1 cut(s)	495
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	107, 209, 508
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	3 cut(s)	221, 348, 357
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	6, 259, 262, 429
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	2 cut(s)	45, 94
PpsI	GAGTC	2 cut(s)	45, 94
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	291, 303
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	508
PvuI	CGATCG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	200, 420
RsaNI	GTAC	2 cut(s)	199, 419
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	4 cut(s)	5, 258, 261, 428
Sau3AI	GATC	3 cut(s)	107, 209, 508
Sau96I	GGNCC	2 cut(s)	291, 303
SchI	GAGTC	2 cut(s)	46, 94
ScrFI	CCNGG	2 cut(s)	495, 505
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	162, 431
SmoI	CTYRAG	2 cut(s)	162, 431
Sse9I	AATT	1 cut(s)	514
SsiI	CCGC	4 cut(s)	5, 145, 260, 389
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	493, 503
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	443, 503
TaqI	TCGA	5 cut(s)	35, 133, 163, 342, 456
TasI	AATT	1 cut(s)	514
TauI	GCSGC	2 cut(s)	7, 263
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	257, 427
Tsp45I	GTSAC	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	303
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.