Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

3871723 .. 3872929

Gene Structure 1207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCGAGACGTTTCAATCCGTTAGAAGATCCGCCGAGTGCTTCTTCAAGCGACGAAGAAGGTAAAGAAATCGCACGAAACTCTTCTTCGGATGATGAAGATGACGTTTCCTCTGAAAACCCATCACCTTTGAAGACGACTCTCGACGCCGTTTCCGATTCCGAATCTGGTTCGGATGAAGAAACCGATTCAGACTCTGAACTCGAGAAGAAGAAAGATCAAGTTGTGACGAATCCTGTGGATGTGAAGAGGGCTAAGAAGGTGAAAACCTCCGAGAAATCTGGGGCTAAACGTTCTCTTGAAGTGGATGAAGCAGCAGTGTCTATGGATGTGAAGAGGGCTAAGAAGGTTTCAGGGGAAGAGGAGAAGAAGAAGAGTGGTGGCGGAGGAGAAGAGACGAAGAAAACTTATTTCCAGCGACTTTGGACTGAAGATGATGAGATTGTGGTTTTACAAGGTCTGATTGATGACAAAAAAGATACAGGGGTAAGTAATACGAATAAGGTTTATGAGTTGGTGAAAAAATCTATTAGTTTTGATGTTAGTAAGAATCAGCTTATGGAAAAGCTTAGGGCTTTAAAGAAGAAGTATGAGAACAATCTTGGTAAAGCCAAGGATGGTGTTGAACCTACTTTCGTCAAACCTCATGATCGCAAGGCTTTTGAATTGTCTAAGTTAGTTTGGGGAGGTATTAGAATGGCTCTTGCATCTGGTATGAAATCTAATGAGAAGTCGAAGAAGAGTAGTAAGTTTGAGTCTGTGAAGCATGAACTTGATTCTTCTTTGCCCAACAGTAAAAACAACTGTGAAGATGAGGTGATGGATGAAGGAGAAGTCTCTTTTACAAAGTCTTCTCTTGTTAGATCGATAGTGGGTCTTGGCATGGATGAACTTACTGCTCAACAAGGATTGAGTAAGCTTGCCTCAAAGGATATGAAGAGATTTTACGAGCAGTGGAAAGCGATGCAGGCTAGGGAATTTGAGTTCTTTTTGCAGAAGCATGGTTTTCTTTTTGAAGTGCTATCAAAGATATCTGAAGCATTTGGATCAAACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

352

Amino Acids

39.23

Weight (kDa)

5.54

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	138 - 229	2.9e-32	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	281 - 346	3.5e-18	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 384
AclI	AACGTT	1 cut(s)	292
AclWI	GGATC	2 cut(s)	23, 1054
AcsI	RAATTY	1 cut(s)	977
AcuI	CTGAAG	2 cut(s)	450, 1056
AcyI	GRCGYC	1 cut(s)	147
AgsI	TTSAA	7 cut(s)	16, 48, 133, 302, 626, 665, 1016
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
AluBI	AGCT	3 cut(s)	556, 568, 919
AluI	AGCT	3 cut(s)	556, 568, 919
Alw26I	GTCTC	2 cut(s)	389, 841
AlwI	GGATC	2 cut(s)	23, 1054
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	977
Asp700I	GAANNNNTTC	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	117, 274, 529, 829
AvaI	CYCGRG	1 cut(s)	203
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BarI	GAAGNNNNNNTAC	2 cut(s)	929, 961
BbsI	GAAGAC	2 cut(s)	140, 843
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	130, 611, 814
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	389, 841
BfaI	CTAG	1 cut(s)	972
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	716, 954
BpiI	GAAGAC	2 cut(s)	140, 843
Bpu10I	CCTNAGC	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	866
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	8 cut(s)	97, 181, 247, 313, 334, 622, 829, 892
BseRI	GAGGAG	2 cut(s)	377, 402
BseXI	GCAGC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	866
BsiHKCI	CYCGRG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	389, 841
BsmBI	CGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	28, 217, 649, 863, 1046
BspACI	CCGC	2 cut(s)	32, 384
BspDI	ATCGAT	1 cut(s)	866
BspHI	TCATGA	1 cut(s)	646
BspPI	GGATC	2 cut(s)	23, 1054
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	5 cut(s)	28, 217, 649, 863, 1046
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	794, 806
Bst6I	CTCTTC	8 cut(s)	88, 242, 329, 354, 368, 387, 734, 932
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	921, 969
BstDEI	CTNAG	5 cut(s)	255, 342, 569, 672, 1056
BstF5I	GGATG	8 cut(s)	97, 181, 247, 313, 334, 622, 829, 892
BstKTI	GATC	5 cut(s)	31, 220, 652, 866, 1049
BstMAI	GTCTC	2 cut(s)	389, 841
BstMBI	GATC	5 cut(s)	28, 217, 649, 863, 1046
BstMWI	GCNNNNNNNGC	1 cut(s)	968
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	2 cut(s)	140, 843
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	866
BsuTUI	ATCGAT	1 cut(s)	866
BtgZI	GCGATG	1 cut(s)	977
BtsCI	GGATG	8 cut(s)	97, 181, 247, 313, 334, 622, 829, 892
BtsI	GCAGTG	2 cut(s)	324, 959
BtsIMutI	CAGTG	2 cut(s)	324, 959
Cac8I	GCNNGC	2 cut(s)	921, 969
CaiI	CAGNNNCTG	1 cut(s)	197
CciI	TCATGA	1 cut(s)	646
ClaI	ATCGAT	1 cut(s)	866
CseI	GACGC	1 cut(s)	155
CviAII	CATG	4 cut(s)	647, 767, 883, 1001
DdeI	CTNAG	5 cut(s)	255, 342, 569, 672, 1056
DpnI	GATC	5 cut(s)	30, 219, 651, 865, 1048
DpnII	GATC	5 cut(s)	28, 217, 649, 863, 1046
DraI	TTTAAA	1 cut(s)	579
Eam1104I	CTCTTC	8 cut(s)	88, 242, 329, 354, 368, 387, 734, 932
EarI	CTCTTC	8 cut(s)	88, 242, 329, 354, 368, 387, 734, 932
EciI	GGCGGA	2 cut(s)	21, 399
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	1032
Eco57I	CTGAAG	2 cut(s)	450, 1056
Eco88I	CYCGRG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	1032
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	4 cut(s)	650, 770, 886, 1004
FatI	CATG	4 cut(s)	646, 766, 882, 1000
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	8 cut(s)	104, 188, 254, 320, 341, 629, 836, 899
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	972
GluI	GCNGC	1 cut(s)	315
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	650, 770, 886, 1004
HindIII	AAGCTT	2 cut(s)	566, 917
HinfI	GANTC	9 cut(s)	139, 158, 164, 188, 194, 232, 550, 755, 776
HphI	GGTGA	4 cut(s)	117, 274, 529, 829
Hpy188III	TCNNGA	5 cut(s)	6, 143, 205, 299, 647
Hpy99I	CGWCG	2 cut(s)	56, 149
HpyAV	CCTTC	4 cut(s)	53, 253, 340, 821
HpyCH4III	ACNGT	2 cut(s)	794, 806
HpyCH4IV	ACGT	3 cut(s)	10, 105, 292
HpyCH4V	TGCA	3 cut(s)	707, 967, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	968
HpyF3I	CTNAG	5 cut(s)	255, 342, 569, 672, 1056
HpySE526I	ACGT	3 cut(s)	10, 105, 292
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	650, 770, 886, 1004
Kzo9I	GATC	5 cut(s)	28, 217, 649, 863, 1046
LpnPI	CCDG	8 cut(s)	153, 249, 267, 339, 428, 468, 696, 953
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	2 cut(s)	716, 954
MaeI	CTAG	1 cut(s)	972
MaeII	ACGT	3 cut(s)	10, 105, 292
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	5 cut(s)	30, 219, 651, 865, 1048
MboI	GATC	5 cut(s)	28, 217, 649, 863, 1046
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	665, 977
MlyI	GAGTC	3 cut(s)	133, 188, 764
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	968
NdeII	GATC	5 cut(s)	28, 217, 649, 863, 1046
NlaIII	CATG	4 cut(s)	650, 770, 886, 1004
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	6 cut(s)	158, 164, 188, 232, 550, 776
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	3 cut(s)	133, 188, 763
PpsI	GAGTC	3 cut(s)	133, 188, 763
Psp1406I	AACGTT	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	5 cut(s)	28, 217, 649, 863, 1046
SchI	GAGTC	3 cut(s)	133, 188, 764
SfaNI	GCATC	2 cut(s)	716, 954
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	665, 977
SsiI	CCGC	2 cut(s)	32, 384
SspMI	CTAG	1 cut(s)	972
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	794, 806
TaiI	ACGT	3 cut(s)	13, 108, 295
TaqI	TCGA	5 cut(s)	5, 144, 204, 734, 866
TasI	AATT	2 cut(s)	665, 977
TfiI	GAWTC	6 cut(s)	158, 164, 188, 232, 550, 776
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	2 cut(s)	324, 959
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	8 cut(s)	111, 192, 324, 731, 783, 840, 903, 950
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	324, 959
XapI	RAATTY	1 cut(s)	977
XhoI	CTCGAG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.