Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

100257 .. 100844

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00232.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGACAAAGCCAATACCAACCGGTCCAAGGTTTGTGGTGGTTCCGGTGAAGCTAAGCTAACTGGGAAGAAGCGGAAGAACGTGAGTGCCAAACAATCAAAGAAAGATGCAAAAAAGGAGAATTCTCAAATGTTAAAGTGGAGTTCGAAAGATGAGGTCCTTGTGCTACAAGGTATGTTGGATTTCAAATCTGTAACAGGTAAGAATCCTGTTGATGATATAAACGGAGCATACGAATTCGTCGTCCATGAATACATAAGCACTGTTATTGACGAAGACTTCATAGAGAAGATGAAGAGTTTGAAGAAGAAATTAAAGAAAAAACAGAGGATTTACGATAAAGATCCGTCTTCTTCGGAACCTCTATACCAGAAAAGTTCCGAGTGGTTGAAAATGATTTGGGGTTATGATGTGGAATCTGCCCTTGAGAAACCAAGGAAGAGTAAGCGGATTATAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

154

Amino Acids

17.67

Weight (kDa)

9.67

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	46 - 135	4.2e-22	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AciI	CCGC	2 cut(s)	73, 448
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	121, 236
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	187, 304, 391
AluBI	AGCT	3 cut(s)	53, 58, 460
AluI	AGCT	3 cut(s)	53, 58, 460
AlwI	GGATC	1 cut(s)	338
ApoI	RAATTY	2 cut(s)	121, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AsiGI	ACCGGT	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	24, 157
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	24, 157
BbsI	GAAGAC	2 cut(s)	282, 342
BlpI	GCTNAGC	1 cut(s)	54
Bme18I	GGWCC	2 cut(s)	24, 157
BmgT120I	GGNCC	2 cut(s)	24, 157
BmiI	GGNNCC	2 cut(s)	43, 360
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	2 cut(s)	282, 342
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	27, 434
BsaWI	WCCGGW	2 cut(s)	21, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	27, 434
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	67
BshTI	ACCGGT	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	22, 45
BslI	CCNNNNNNNGG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	343
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	73, 448
BspLI	GGNNCC	2 cut(s)	43, 360
BspPI	GGATC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	27, 434
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	27, 434
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	290, 434
BstBI	TTCGAA	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstV2I	GAAGAC	2 cut(s)	282, 342
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	24, 157
CspAI	ACCGGT	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	11, 53, 58, 460
CviKI_1	RGCY	4 cut(s)	11, 53, 58, 460
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	290, 434
EarI	CTCTTC	2 cut(s)	290, 434
Eco130I	CCWWGG	2 cut(s)	27, 434
Eco47I	GGWCC	2 cut(s)	24, 157
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	121, 236
EcoT14I	CCWWGG	2 cut(s)	27, 434
ErhI	CCWWGG	2 cut(s)	27, 434
FaeI	CATG	1 cut(s)	251
FaiI	YATR	9 cut(s)	176, 221, 232, 249, 257, 284, 367, 408, 455
FatI	CATG	1 cut(s)	247
HapII	CCGG	2 cut(s)	22, 45
Hin1II	CATG	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	205, 416
HpaII	CCGG	2 cut(s)	22, 45
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	358, 382
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	6 cut(s)	35, 48, 58, 183, 222, 383
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	3 cut(s)	121, 236, 311
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	148, 321, 372
MseI	TTAA	2 cut(s)	134, 314
MspI	CCGG	2 cut(s)	22, 45
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	43, 360
NspV	TTCGAA	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PfeI	GAWTC	2 cut(s)	205, 416
PinAI	ACCGGT	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	43, 360
PspPI	GGNCC	2 cut(s)	24, 157
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	134, 314
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	24, 157
SetI	ASST	9 cut(s)	33, 55, 60, 84, 159, 175, 202, 364, 462
SfaNI	GCATC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	2 cut(s)	24, 157
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	121, 236, 311
SsiI	CCGC	2 cut(s)	73, 448
StyI	CCWWGG	2 cut(s)	27, 434
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	121, 236, 311
TfiI	GAWTC	2 cut(s)	205, 416
Tru1I	TTAA	2 cut(s)	134, 314
Tru9I	TTAA	2 cut(s)	134, 314
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	264, 271, 308
TspGWI	ACGGA	2 cut(s)	240, 336
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	24, 157
XapI	RAATTY	2 cut(s)	121, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.