Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

30739267 .. 30740442

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTCCCAAGCGCCCATCTCCGCTGGACGAACCGCCGGCAGCTTCTTCGTCGGGAGGTGAGGAAGTCTCGTCGGAGGAAGAAGAAGGGGAAGAAGAGGAATCCGGATCTGGGTCAGATTCCGAACCCGAAGAGCCTCTGCCTCCGAAGACCTCGTCTTCAGCACCGGTTGCCGAGAAGAAGCCACCGCCCAAGAAGCCGGACTCCTCTGCCGCCAATTCGAAGCCGCAGTTTTCATCCTCTGGTTCCGAGGACGATTCCGGTTCCGACGTGGATAAGGATTTGGTGGTGAAGCCGATTGCTTCGAAGCCAATGGAAGAGACGCCGAAGACAAAGAGGCCCAGATCAAAGCCCGCGGCTACTGCTACGCCGGCGGCGAAATCCGGGTCCAAACGGCCCAGCGAGACCGAGCCTAAGGATTCAAAGCGGCCAAAGAAGAAGGGAGCTGCGGTGGAGCAGGAACCGGACCAGGTCGAGGAGGAAGCGAAGAAGTGCAAGCTGTTCCAGAGGATTTGGAGCGATGAGGATGAGGTAATTATCTTGAAAGGCATGGTTGATTATACCACCAAGAAAGGGGCGGACCCGTATTCCGATATGGGTGCGTTCCATGACTTTATCAAGAAATCGCTGAAGGTGGATGTGAACAAATCCCAATTGCAAGCTAAGATTCGTCGGCTGAAGAAGAAGTATGCGACTAATGTGAAGAAGAAGAAGTATAATCTTACTAAAGCTCATGACCAGAAGGTGTTTGACTTGTCGAAGAAGGTATGGGGCGGCAGCGGCGAAGGGTCGAGTGGTGTCAACGAGCCGTCTGAACAGCCAAAGTCTAATGGGAAGGCTAGGAATACCAAGACTTTGGCTTCGATAAAAGCTGATATTTTGAGCTCACCGGAGCGTTCAAAAGAGGCCACGAAGGTGGATTTGGGTCTGAATCCGTGCTCTTCGGAAGGTTTGAGTGAGGTGATTGGGTTTGACAAGTGTTTCAGGGAGCTGGGATTACCGGAGGGTGTGGTGAAACAAGGTTTGGAGTTGATTGGAGAGTCCAAGCGAGCTGACTTGAAGGAGAAGTGGAGGAAGCTGCACGTTGCTGAATTGGAGCTTTTTGTGAAGCGGAGCGAGTTAATGAGAGATCGGACGAAGGTGATTCTGGAGGCTTTAAGGTCATCCGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

392

Amino Acids

42.67

Weight (kDa)

8.83

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	168 - 258	1.8e-33	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	327 - 381	5.1e-06	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	104
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	2 cut(s)	428, 1168
AcuI	CTGAAG	3 cut(s)	144, 650, 698
AcyI	GRCGYC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	111, 475, 573
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	423, 544, 900, 1060
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	4 cut(s)	905, 937, 1007, 1039
AleI	CACNNNNGTG	1 cut(s)	914
Alw21I	GWGCWC	2 cut(s)	887, 941
Alw26I	GTCTC	3 cut(s)	73, 314, 398
AlwI	GGATC	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	5 cut(s)	338, 395, 428, 906, 1168
ApeKI	GCWGC	4 cut(s)	41, 446, 777, 1078
ArsI	GACNNNNNNTTYG	6 cut(s)	140, 172, 371, 403, 844, 876
AsiGI	ACCGGT	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	5 cut(s)	339, 387, 396, 466, 580
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	6 cut(s)	71, 301, 879, 973, 1024, 1153
AsuII	TTCGAA	2 cut(s)	221, 305
AvaII	GGWCC	3 cut(s)	387, 466, 580
AxyI	CCTNAGG	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	887
BbsI	GAAGAC	3 cut(s)	150, 155, 335
Bbv12I	GWGCWC	2 cut(s)	887, 941
BbvI	GCAGC	4 cut(s)	53, 433, 789, 1065
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	410, 793
BcgI	CGANNNNNNTGC	4 cut(s)	30, 64, 581, 615
BciT130I	CCWGG	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	73, 314, 398
BfaI	CTAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	385, 470
Bme18I	GGWCC	3 cut(s)	387, 466, 580
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	5 cut(s)	339, 387, 396, 466, 580
BmiI	GGNNCC	6 cut(s)	6, 247, 265, 388, 462, 582
BmrFI	CCNGG	2 cut(s)	385, 470
BpiI	GAAGAC	3 cut(s)	150, 155, 335
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	1169
Bpu14I	TTCGAA	2 cut(s)	221, 305
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	249, 354
BsaWI	WCCGGW	6 cut(s)	104, 166, 260, 463, 889, 1000
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 475, 573
Bse118I	RCCGGY	3 cut(s)	37, 166, 370
Bse21I	CCTNAGG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	249, 354
BseGI	GGATG	4 cut(s)	236, 532, 643, 1163
BseLI	CCNNNNNNNGG	3 cut(s)	111, 475, 573
BseRI	GAGGAG	2 cut(s)	196, 491
BseXI	GCAGC	4 cut(s)	53, 433, 789, 1065
BseYI	CCCAGC	2 cut(s)	398, 991
BsgI	GTGCAG	1 cut(s)	1064
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	5 cut(s)	340, 397, 430, 908, 1170
BshTI	ACCGGT	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	887, 941
BslI	CCNNNNNNNGG	3 cut(s)	111, 475, 573
BsmAI	GTCTC	3 cut(s)	73, 314, 398
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	5 cut(s)	340, 397, 430, 908, 1170
Bso31I	GGTCTC	1 cut(s)	398
Bsp119I	TTCGAA	2 cut(s)	221, 305
Bsp1286I	GDGCHC	2 cut(s)	887, 941
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	107, 344, 1129
BspANI	GGCC	5 cut(s)	340, 397, 430, 908, 1170
BspEI	TCCGGA	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	6 cut(s)	6, 247, 265, 388, 462, 582
BspPI	GGATC	1 cut(s)	115
BspQI	GCTCTTC	2 cut(s)	126, 946
BspT104I	TTCGAA	2 cut(s)	221, 305
BspTNI	GGTCTC	1 cut(s)	398
BsrFI	RCCGGY	3 cut(s)	37, 166, 370
BssAI	RCCGGY	3 cut(s)	37, 166, 370
BssECI	CCNNGG	2 cut(s)	249, 354
BssMI	GATC	3 cut(s)	107, 344, 1129
BssNI	GRCGYC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	470
Bst6I	CTCTTC	4 cut(s)	90, 126, 312, 946
BstACI	GRCGYC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	2 cut(s)	221, 305
BstC8I	GCNNGC	6 cut(s)	39, 354, 372, 497, 660, 1050
BstDEI	CTNAG	2 cut(s)	414, 663
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	236, 532, 643, 1163
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	110, 347, 1132
BstMAI	GTCTC	3 cut(s)	73, 314, 398
BstMBI	GATC	3 cut(s)	107, 344, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 196, 362, 371, 780
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	383, 468
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	53, 433, 789, 1065
BstV2I	GAAGAC	3 cut(s)	150, 155, 335
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	2 cut(s)	856, 916
BstYI	RGATCY	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	5 cut(s)	340, 397, 430, 908, 1170
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	4 cut(s)	236, 532, 643, 1163
Cac8I	GCNNGC	6 cut(s)	39, 354, 372, 497, 660, 1050
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	37, 166, 370
Cfr13I	GGNCC	5 cut(s)	339, 387, 396, 466, 580
Cfr42I	CCGCGG	1 cut(s)	357
CseI	GACGC	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	468
CspAI	ACCGGT	1 cut(s)	166
CviAII	CATG	3 cut(s)	550, 608, 734
DdeI	CTNAG	2 cut(s)	414, 663
DpnI	GATC	3 cut(s)	109, 346, 1131
DpnII	GATC	3 cut(s)	107, 344, 1129
EaeI	YGGCCR	2 cut(s)	428, 1168
Eam1104I	CTCTTC	4 cut(s)	90, 126, 312, 946
EarI	CTCTTC	4 cut(s)	90, 126, 312, 946
EciI	GGCGGA	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	3 cut(s)	387, 466, 580
Eco53kI	GAGCTC	1 cut(s)	885
Eco57I	CTGAAG	3 cut(s)	144, 650, 698
Eco81I	CCTNAGG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	887
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	3 cut(s)	553, 611, 737
FaiI	YATR	8 cut(s)	551, 561, 596, 609, 690, 717, 735, 769
FatI	CATG	3 cut(s)	549, 607, 733
FauI	CCCGC	1 cut(s)	361
FokI	GGATG	4 cut(s)	223, 539, 650, 1150
FriOI	GRGCYC	1 cut(s)	887
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	14
GsaI	CCCAGC	2 cut(s)	402, 995
GsuI	CTGGAG	1 cut(s)	1169
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	5 cut(s)	340, 397, 430, 908, 1170
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	553, 611, 737
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	9 cut(s)	101, 119, 203, 257, 419, 667, 931, 1040, 1144
HphI	GGTGA	6 cut(s)	71, 301, 879, 973, 1024, 1153
Hpy166II	GTNNAC	2 cut(s)	643, 802
Hpy188III	TCNNGA	7 cut(s)	54, 105, 505, 541, 619, 734, 1148
Hpy8I	GTNNAC	2 cut(s)	643, 802
Hpy99I	CGWCG	4 cut(s)	55, 76, 272, 675
HpyCH4IV	ACGT	2 cut(s)	270, 1083
HpyCH4V	TGCA	3 cut(s)	495, 658, 1081
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 196, 362, 371, 780
HpyF3I	CTNAG	2 cut(s)	414, 663
HpySE526I	ACGT	2 cut(s)	270, 1083
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	553, 611, 737
HspAI	GCGC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	37, 370
KroNI	GCCGGC	2 cut(s)	39, 372
KspI	CCGCGG	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	107, 344, 1129
LguI	GCTCTTC	2 cut(s)	126, 946
LmnI	GCTCC	8 cut(s)	10, 443, 454, 516, 892, 988, 1096, 1113
Lsp1109I	GCAGC	4 cut(s)	53, 433, 789, 1065
MabI	ACCWGGT	1 cut(s)	468
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	2 cut(s)	270, 1083
MalI	GATC	3 cut(s)	109, 346, 1131
MboI	GATC	3 cut(s)	107, 344, 1129
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	887, 941
MluCI	AATT	4 cut(s)	217, 534, 653, 1091
MlyI	GAGTC	2 cut(s)	197, 1049
MmeI	TCCRAC	2 cut(s)	54, 291
MreI	CGCCGGCG	1 cut(s)	370
MroI	TCCGGA	1 cut(s)	104
MroNI	GCCGGC	2 cut(s)	37, 370
MseI	TTAA	2 cut(s)	1121, 1157
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	3 cut(s)	25, 356, 780
MspR9I	CCNGG	2 cut(s)	385, 470
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	170, 196, 362, 371, 780
NaeI	GCCGGC	2 cut(s)	39, 372
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	107, 344, 1129
NgoMIV	GCCGGC	2 cut(s)	37, 370
NlaIII	CATG	3 cut(s)	553, 611, 737
NlaIV	GGNNCC	6 cut(s)	6, 247, 265, 388, 462, 582
NmeAIII	GCCGAG	1 cut(s)	199
NspV	TTCGAA	2 cut(s)	221, 305
OliI	CACNNNNGTG	1 cut(s)	914
PagI	TCATGA	1 cut(s)	733
PciSI	GCTCTTC	2 cut(s)	126, 946
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdiI	GCCGGC	2 cut(s)	39, 372
PfeI	GAWTC	7 cut(s)	101, 119, 257, 419, 667, 931, 1144
PflFI	GACNNNGTC	2 cut(s)	154, 470
PinAI	ACCGGT	1 cut(s)	166
PleI	GAGTC	2 cut(s)	197, 1048
PpsI	GAGTC	2 cut(s)	197, 1048
Psp124BI	GAGCTC	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	2 cut(s)	398, 991
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	6 cut(s)	6, 247, 265, 388, 462, 582
PspPI	GGNCC	5 cut(s)	339, 387, 396, 466, 580
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	2 cut(s)	154, 470
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	1 cut(s)	887
SacII	CCGCGG	1 cut(s)	357
SapI	GCTCTTC	2 cut(s)	126, 946
SaqAI	TTAA	2 cut(s)	1121, 1157
Sau3AI	GATC	3 cut(s)	107, 344, 1129
Sau96I	GGNCC	5 cut(s)	339, 387, 396, 466, 580
SchI	GAGTC	2 cut(s)	197, 1049
ScrFI	CCNGG	2 cut(s)	385, 470
SduI	GDGCHC	2 cut(s)	887, 941
SexAI	ACCWGGT	1 cut(s)	468
Sfr303I	CCGCGG	1 cut(s)	357
SfuI	TTCGAA	2 cut(s)	221, 305
SgrAI	CRCCGGYG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	357
SinI	GGWCC	3 cut(s)	387, 466, 580
SmiMI	CAYNNNNRTG	1 cut(s)	914
Sse9I	AATT	4 cut(s)	217, 534, 653, 1091
SspMI	CTAG	1 cut(s)	840
SstI	GAGCTC	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	383, 468
TaiI	ACGT	2 cut(s)	273, 1086
TaqI	TCGA	6 cut(s)	221, 305, 474, 758, 791, 863
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	217, 534, 653, 1091
TauI	GCSGC	7 cut(s)	215, 229, 359, 377, 430, 777, 783
TfiI	GAWTC	7 cut(s)	101, 119, 257, 419, 667, 931, 1144
Tru1I	TTAA	2 cut(s)	1121, 1157
Tru9I	TTAA	2 cut(s)	1121, 1157
TseI	GCWGC	4 cut(s)	41, 446, 777, 1078
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	924
Tth111I	GACNNNGTC	2 cut(s)	154, 470
VpaK11BI	GGWCC	3 cut(s)	387, 466, 580
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.