Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

103823 .. 105221

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00238.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTTCTTTGGAAAATCCAGCAATCGATTCTTCAAGCGAATTTGAGAGTTCTTCTGAAGAGATCTCTTCTTCTAAAGAAAGCAAACCCAAAGAAGCTCCCGTCACTGTTCCGTCAACAAAAACCCTAAACTCTCCTTCCGCCGCCGTGGCAGTTTCTGATGACTCAGAGTCAGAGAAGCAGTCATTCGTCTTAACCAGGCGGAAGAAGAAAGAAGGTGCTGCTGAATCACCGGCAGTGAAGTCAGGGAAGAAAGAAGGTGCTGCTGAATCACCGGCAGTGAAGTCAGGGAATAACGAAGGTGCTACTGAATCACCGGCGGTGAAGTCAGGGAAGAAGCGAGCTAGCGAAGGAACCACGTCAAGGGACATGCATGTCAAAAGAATTAAGAAAGAGGGCGATAACAAAAAGGGGCATGCTCAGAGAGTATGGAGTGAAGAAGACGAGATCTCTCTCCTGCAAGCAATGATCGATTTCAAAGCTGAGACAGGTACAAGTCCTTGGGATCATAAGGATAGGTTTTTTGATATCGCCAAGAAATCTATAAGCTTTGATGTTAGTAAAGTCCAGTTCTTTGACAAGATTAGAAGCTTTAAGAGAAAGTATTTTGGTGACCGGAAGGTGAGAAGTGTTGAATCGGATCATGATAAGAAGTGTTTGGGTTTGGCTGTTTCTTTTTGGGGATCTGATGGTGTGAGCCTTGAAACTCCTGTGAAGAAGAAAGTGAAAGATGAATCTGTTCTTGTTAAGGCTAATAGCAAGGAGAAGAACGTGAAACCTTTGGTTAAAGAAGATGAGCAAGTCGTGATTCTTGGAGAAGATTCGGAGTGGTTTGAGGAGTCTTTTCTTGTTCCGGTTATCGCTAGTCTCGGTTTGGATGAGTATTCTGTGAAGAAGAAGTGGAGCAAGGTGTCCGTGGAGACTAAGAAGAGGATTCAAGAGAAGATGAAGCTTGTGGATGCTAAGAAATGTGAGTTGTTGTTGGCGAACATGGATGTTTTGAAGGAGGTGACTTCAGTGCTTACTCAAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

345

Amino Acids

38.19

Weight (kDa)

8.81

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	141 - 228	1.1e-25	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	276 - 342	1.5e-27	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AciI	CCGC	4 cut(s)	141, 144, 202, 320
AclWI	GGATC	3 cut(s)	513, 648, 691
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	78, 999
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	6 cut(s)	36, 478, 635, 704, 938, 1003
AhdI	GACNNNNNGTC	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	98, 344, 482, 549, 591, 952
AluI	AGCT	6 cut(s)	98, 344, 482, 549, 591, 952
Alw26I	GTCTC	3 cut(s)	479, 872, 914
AlwI	GGATC	3 cut(s)	513, 648, 691
AlwNI	CAGNNNCTG	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	221, 263
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	738
AsuHPI	GGTGA	7 cut(s)	222, 264, 306, 334, 623, 634, 1021
AsuNHI	GCTAGC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	208, 250
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	479, 872, 914
BfaI	CTAG	2 cut(s)	345, 864
BglI	GCCNNNNNGGC	1 cut(s)	149
BglII	AGATCT	2 cut(s)	63, 447
BisI	GCNGC	3 cut(s)	144, 222, 264
BlsI	GCNGC	3 cut(s)	145, 223, 265
Bme1390I	CCNGG	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	949
BmtI	GCTAGC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	447
Bsa29I	ATCGAT	2 cut(s)	27, 471
BsaJI	CCNNGG	3 cut(s)	147, 500, 915
BsaWI	WCCGGW	2 cut(s)	615, 853
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	3 cut(s)	232, 274, 316
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	2 cut(s)	27, 471
BseDI	CCNNGG	3 cut(s)	147, 500, 915
BseGI	GGATG	3 cut(s)	883, 964, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	180, 434, 474
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	2 cut(s)	208, 250
BshVI	ATCGAT	2 cut(s)	27, 471
BsiSI	CCGG	5 cut(s)	233, 275, 317, 616, 854
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	3 cut(s)	479, 872, 914
BsmFI	GGGAC	1 cut(s)	380
Bsp143I	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
BspACI	CCGC	4 cut(s)	141, 144, 202, 320
BspCNI	CTCAG	3 cut(s)	179, 433, 475
BspDI	ATCGAT	2 cut(s)	27, 471
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	513, 648, 691
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	3 cut(s)	232, 274, 316
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	3 cut(s)	232, 274, 316
BssECI	CCNNGG	3 cut(s)	147, 500, 915
BssMI	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	54, 73, 923
BstC8I	GCNNGC	4 cut(s)	342, 346, 417, 462
BstDEI	CTNAG	5 cut(s)	166, 420, 483, 924, 963
BstDSI	CCRYGG	2 cut(s)	147, 915
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	3 cut(s)	883, 964, 1000
BstKTI	GATC	6 cut(s)	66, 450, 471, 508, 643, 686
BstMAI	GTCTC	3 cut(s)	479, 872, 914
BstMBI	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	3 cut(s)	373, 377, 419
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	208, 250
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	3 cut(s)	63, 447, 683
BstYI	RGATCY	3 cut(s)	63, 447, 683
Bsu15I	ATCGAT	2 cut(s)	27, 471
BsuTUI	ATCGAT	2 cut(s)	27, 471
BtgI	CCRYGG	2 cut(s)	147, 915
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	883, 964, 1000
BtsI	GCAGTG	2 cut(s)	243, 285
BtsIMutI	CAGTG	4 cut(s)	105, 243, 285, 1023
Cac8I	GCNNGC	4 cut(s)	342, 346, 417, 462
CaiI	CAGNNNCTG	1 cut(s)	158
CciI	TCATGA	1 cut(s)	643
Cfr10I	RCCGGY	3 cut(s)	232, 274, 316
ClaI	ATCGAT	2 cut(s)	27, 471
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	5 cut(s)	370, 374, 416, 644, 991
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	5 cut(s)	166, 420, 483, 924, 963
DpnI	GATC	6 cut(s)	65, 449, 470, 507, 642, 685
DpnII	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
DrdI	GACNNNNNNGTC	1 cut(s)	374
DriI	GACNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	3 cut(s)	54, 73, 923
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	3 cut(s)	54, 73, 923
EciI	GGCGGA	2 cut(s)	130, 217
Eco130I	CCWWGG	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	529
Eco57I	CTGAAG	2 cut(s)	78, 999
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	5 cut(s)	373, 377, 419, 647, 994
FaiI	YATR	8 cut(s)	371, 375, 417, 430, 510, 545, 645, 992
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	5 cut(s)	369, 373, 415, 643, 990
Fnu4HI	GCNGC	3 cut(s)	144, 222, 264
FokI	GGATG	3 cut(s)	890, 971, 1007
Fsp4HI	GCNGC	3 cut(s)	144, 222, 264
FspBI	CTAG	2 cut(s)	345, 864
GluI	GCNGC	3 cut(s)	144, 222, 264
HapII	CCGG	5 cut(s)	233, 275, 317, 616, 854
Hin1II	CATG	5 cut(s)	373, 377, 419, 647, 994
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	3 cut(s)	547, 589, 950
HpaII	CCGG	5 cut(s)	233, 275, 317, 616, 854
HphI	GGTGA	7 cut(s)	222, 264, 306, 334, 623, 634, 1021
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	8 cut(s)	58, 160, 169, 175, 423, 640, 688, 826
Hpy188III	TCNNGA	3 cut(s)	644, 805, 938
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	7 cut(s)	147, 209, 251, 293, 344, 613, 997
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	359, 771
HpyCH4V	TGCA	2 cut(s)	373, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	5 cut(s)	166, 420, 483, 924, 963
HpySE526I	ACGT	2 cut(s)	359, 771
Hsp92II	CATG	5 cut(s)	373, 377, 419, 647, 994
Kzo9I	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
LmnI	GCTCC	2 cut(s)	103, 903
Lsp1109I	GCAGC	2 cut(s)	208, 250
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	2 cut(s)	345, 864
MaeII	ACGT	2 cut(s)	359, 771
MaeIII	GTNAC	3 cut(s)	103, 611, 1009
MalI	GATC	6 cut(s)	65, 449, 470, 507, 642, 685
MboI	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
MflI	RGATCY	3 cut(s)	63, 447, 683
MluCI	AATT	2 cut(s)	41, 384
MlyI	GAGTC	3 cut(s)	158, 179, 848
MnlI	CCTC	4 cut(s)	388, 829, 924, 1000
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	5 cut(s)	194, 387, 594, 747, 786
MspI	CCGG	5 cut(s)	233, 275, 317, 616, 854
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	5 cut(s)	373, 377, 419, 647, 994
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	3 cut(s)	103, 611, 1009
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	3 cut(s)	373, 377, 419
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	9 cut(s)	29, 227, 269, 311, 635, 734, 808, 821, 934
PkrI	GCNGC	3 cut(s)	145, 223, 265
PleI	GAGTC	3 cut(s)	158, 178, 847
PpsI	GAGTC	3 cut(s)	158, 178, 847
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	3 cut(s)	63, 447, 683
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SaqAI	TTAA	5 cut(s)	194, 387, 594, 747, 786
SatI	GCNGC	3 cut(s)	144, 222, 264
Sau3AI	GATC	6 cut(s)	63, 447, 468, 505, 640, 683
SchI	GAGTC	3 cut(s)	158, 179, 848
ScrFI	CCNGG	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	949
SgrAI	CRCCGGYG	1 cut(s)	316
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	41, 384
SsiI	CCGC	4 cut(s)	141, 144, 202, 320
SspMI	CTAG	2 cut(s)	345, 864
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	362, 774
TaqI	TCGA	2 cut(s)	27, 471
TasI	AATT	2 cut(s)	41, 384
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	9 cut(s)	29, 227, 269, 311, 635, 734, 808, 821, 934
Tru1I	TTAA	5 cut(s)	194, 387, 594, 747, 786
Tru9I	TTAA	5 cut(s)	194, 387, 594, 747, 786
TscAI	CASTG	4 cut(s)	112, 243, 285, 1023
TseFI	GTSAC	3 cut(s)	103, 611, 1009
TseI	GCWGC	2 cut(s)	221, 263
Tsp45I	GTSAC	3 cut(s)	103, 611, 1009
TspDTI	ATGAA	2 cut(s)	747, 962
TspGWI	ACGGA	2 cut(s)	102, 904
TspRI	CASTG	4 cut(s)	112, 243, 285, 1023
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	3 cut(s)	373, 377, 419
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	345, 864
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.