Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

17091937 .. 17093532

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGAAATCCAAGCGCGCCCGCACTCCATTGGCAGAAGAAGCCGATGGCGCTGAGCAAGTCATTGCCTCCCAACTGAAGAAAAAGAAGCCGGAACCTACCAAATCGGAGTCTAGCAAGCCTCCGTCTCCTCCCTCCGACTACGAGACTGGATCCGAAACCGACTCCGGCTCCGAGTCCGACGGGGCCGGACAAGTGCAAGCAGCCAACGCCAAGCGCGATGCTGCCGCCAAGGAGCCCGTCCTGACCAGGTCCAAGGCGTCAGCTACTCCGGCGACGGCTGCGGAGAAGACAAAAGAGGTGGCTGAGAGTGAGAATGAGGCTGAGAAGGAGGAGAAGCCGAAGGTGACGCCGTTCCAGAGAGTCTTTACCGAAAAAGACGAGCTGCTTTTGCTCAGAGCCTTGCAGGAGAAAGATGCCTGGGTTGAGATGGATGCATTTTATGAGTTGGTTAAGGATCGTCTGAGCGTGAGAGTCACAAAGTCACAACTTCAAGAAAAATTGAAGCGAATGAAGAAGAAGTTCAAACGGATGGCCAAGGACGGTTTCAAGCCCAAACAAGGCCATGAGTTGGAAGCCGAGCTGATGAAGAAAGTCTGGGGTGGTGGTGCTGGACATGTGAAAGCTGGAAAGGCGGAGGGTGAGGTTTCGGGGGCATCACTTGATGTGTTGTCTGGAATGGTAGGAGGATTTGAGGGTTTTAAAGAGCTTGGTTTTTCAGAAGCTTTTCTGAAAAAAGGGATGGATTTGGTTGATGAAGCAAAACGTGAAGAGCTGAAGGCTAGGTGGTTTAAGCTTGAAGTTGCTGCTGTGGAGCTTTTTTCTGTCAAGGCTGAGCTCTTGAGAGACCAAGCCAAGTCGATCTTGGAGGCCCTTAAGCAATCTGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

298

Amino Acids

32.62

Weight (kDa)

8.39

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	119 - 201	2.3e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccII	CGCG	2 cut(s)	18, 219
AciI	CCGC	4 cut(s)	22, 228, 284, 635
AclWI	GGATC	3 cut(s)	147, 160, 465
AcoI	YGGCCR	1 cut(s)	534
AcuI	CTGAAG	2 cut(s)	98, 797
AcyI	GRCGYC	2 cut(s)	260, 350
AfiI	CCNNNNNNNGG	2 cut(s)	560, 571
AflII	CTTAAG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	5 cut(s)	494, 505, 526, 550, 800
AjnI	CCWGG	2 cut(s)	248, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	3 cut(s)	132, 140, 840
AlwI	GGATC	3 cut(s)	147, 160, 465
AoxI	GGCC	4 cut(s)	186, 534, 562, 870
ApeKI	GCWGC	5 cut(s)	203, 224, 281, 385, 806
Asp700I	GAANNNNTTC	2 cut(s)	521, 726
AspLEI	GCGC	4 cut(s)	18, 20, 53, 219
AspS9I	GGNCC	3 cut(s)	186, 252, 871
AsuHPI	GGTGA	2 cut(s)	358, 653
AvaII	GGWCC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	240, 840
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	5 cut(s)	211, 215, 268, 372, 793
BccI	CCATC	4 cut(s)	41, 424, 526, 736
BceAI	ACGGC	2 cut(s)	294, 337
BciT130I	CCWGG	2 cut(s)	250, 421
BcoDI	GTCTC	3 cut(s)	132, 140, 840
BfaI	CTAG	2 cut(s)	114, 783
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	875
BisI	GCNGC	6 cut(s)	204, 225, 228, 282, 386, 807
BlpI	GCTNAGC	2 cut(s)	54, 834
BlsI	GCNGC	6 cut(s)	205, 226, 229, 283, 387, 808
Bme1390I	CCNGG	2 cut(s)	250, 421
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	3 cut(s)	186, 252, 871
BmiI	GGNNCC	5 cut(s)	96, 154, 172, 187, 237
BmrFI	CCNGG	2 cut(s)	250, 421
BmsI	GCATC	4 cut(s)	211, 406, 424, 665
BpiI	GAAGAC	1 cut(s)	296
Bpu1102I	GCTNAGC	2 cut(s)	54, 834
BpuEI	CTTGAG	1 cut(s)	862
BsaHI	GRCGYC	2 cut(s)	260, 350
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	4 cut(s)	231, 255, 420, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 571
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	250, 421
BseDI	CCNNGG	4 cut(s)	231, 255, 420, 537
BseGI	GGATG	3 cut(s)	439, 537, 747
BseLI	CCNNNNNNNGG	2 cut(s)	560, 571
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	6 cut(s)	45, 297, 315, 409, 455, 825
BseNI	ACTGG	1 cut(s)	154
BsePI	GCGCGC	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	120, 347
BseXI	GCAGC	5 cut(s)	211, 215, 268, 372, 793
Bsh1236I	CGCG	2 cut(s)	18, 219
BshFI	GGCC	4 cut(s)	188, 536, 564, 872
BsiHKAI	GWGCWC	1 cut(s)	840
BsiSI	CCGG	4 cut(s)	92, 168, 189, 272
BslI	CCNNNNNNNGG	2 cut(s)	560, 571
BsmAI	GTCTC	3 cut(s)	132, 140, 840
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	4 cut(s)	188, 536, 564, 872
Bso31I	GGTCTC	1 cut(s)	840
Bsp1286I	GDGCHC	2 cut(s)	240, 840
Bsp143I	GATC	3 cut(s)	152, 457, 861
Bsp1720I	GCTNAGC	2 cut(s)	54, 834
BspACI	CCGC	4 cut(s)	22, 228, 284, 635
BspANI	GGCC	4 cut(s)	188, 536, 564, 872
BspCNI	CTCAG	6 cut(s)	46, 298, 316, 408, 456, 826
BspFNI	CGCG	2 cut(s)	18, 219
BspLI	GGNNCC	5 cut(s)	96, 154, 172, 187, 237
BspPI	GGATC	3 cut(s)	147, 160, 465
BspQI	GCTCTTC	1 cut(s)	765
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	4 cut(s)	231, 255, 420, 537
BssHII	GCGCGC	1 cut(s)	16
BssMI	GATC	3 cut(s)	152, 457, 861
BssNI	GRCGYC	2 cut(s)	260, 350
BssT1I	CCWWGG	3 cut(s)	231, 255, 537
Bst2UI	CCWGG	2 cut(s)	250, 421
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	765
BstACI	GRCGYC	2 cut(s)	260, 350
BstAFI	CTTAAG	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	18, 22, 119, 201
BstDEI	CTNAG	6 cut(s)	54, 306, 324, 395, 464, 834
BstF5I	GGATG	3 cut(s)	439, 537, 747
BstFNI	CGCG	2 cut(s)	18, 219
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	4 cut(s)	18, 20, 53, 219
BstKTI	GATC	3 cut(s)	155, 460, 864
BstMAI	GTCTC	3 cut(s)	132, 140, 840
BstMBI	GATC	3 cut(s)	152, 457, 861
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 50, 209, 272, 281, 391, 632
BstNI	CCWGG	2 cut(s)	250, 421
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	248, 419
BstUI	CGCG	2 cut(s)	18, 219
BstV1I	GCAGC	5 cut(s)	211, 215, 268, 372, 793
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	188, 536, 564, 872
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	439, 537, 747
Cac8I	GCNNGC	4 cut(s)	18, 22, 119, 201
CfoI	GCGC	4 cut(s)	18, 20, 53, 219
Cfr13I	GGNCC	3 cut(s)	186, 252, 871
CseI	GACGC	2 cut(s)	249, 358
CsiI	ACCWGGT	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	2 cut(s)	566, 617
DdeI	CTNAG	6 cut(s)	54, 306, 324, 395, 464, 834
DpnI	GATC	3 cut(s)	154, 459, 863
DpnII	GATC	3 cut(s)	152, 457, 861
DraI	TTTAAA	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
EciI	GGCGGA	1 cut(s)	650
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	3 cut(s)	231, 255, 537
Eco24I	GRGCYC	2 cut(s)	240, 840
Eco31I	GGTCTC	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	98, 797
EcoICRI	GAGCTC	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	248, 419
EcoT14I	CCWWGG	3 cut(s)	231, 255, 537
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	240, 840
ErhI	CCWWGG	3 cut(s)	231, 255, 537
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	569, 620
FaiI	YATR	3 cut(s)	444, 567, 618
FalI	AAGNNNNNCTT	2 cut(s)	848, 880
FatI	CATG	2 cut(s)	565, 616
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	6 cut(s)	204, 225, 228, 282, 386, 807
FokI	GGATG	3 cut(s)	446, 544, 754
FriOI	GRGCYC	2 cut(s)	240, 840
Fsp4HI	GCNGC	6 cut(s)	204, 225, 228, 282, 386, 807
FspBI	CTAG	2 cut(s)	114, 783
GlaI	GCGC	4 cut(s)	17, 19, 52, 218
GluI	GCNGC	6 cut(s)	204, 225, 228, 282, 386, 807
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	188, 536, 564, 872
HapII	CCGG	4 cut(s)	92, 168, 189, 272
HgaI	GACGC	2 cut(s)	249, 358
HhaI	GCGC	4 cut(s)	18, 20, 53, 219
Hin1I	GRCGYC	2 cut(s)	260, 350
Hin1II	CATG	2 cut(s)	569, 620
Hin6I	GCGC	4 cut(s)	16, 18, 51, 217
HinP1I	GCGC	4 cut(s)	16, 18, 51, 217
HindIII	AAGCTT	2 cut(s)	723, 794
HinfI	GANTC	5 cut(s)	110, 164, 176, 363, 474
HpaII	CCGG	4 cut(s)	92, 168, 189, 272
HphI	GGTGA	2 cut(s)	358, 653
Hpy188III	TCNNGA	5 cut(s)	244, 358, 494, 675, 841
Hpy99I	CGWCG	2 cut(s)	185, 280
HpyAV	CCTTC	3 cut(s)	322, 337, 772
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	3 cut(s)	199, 406, 437
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 50, 209, 272, 281, 391, 632
HpyF3I	CTNAG	6 cut(s)	54, 306, 324, 395, 464, 834
HpySE526I	ACGT	1 cut(s)	766
Hsp92I	GRCGYC	2 cut(s)	260, 350
Hsp92II	CATG	2 cut(s)	569, 620
HspAI	GCGC	4 cut(s)	16, 18, 51, 217
Kzo9I	GATC	3 cut(s)	152, 457, 861
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	3 cut(s)	176, 235, 814
Lsp1109I	GCAGC	5 cut(s)	211, 215, 268, 372, 793
LweI	GCATC	4 cut(s)	211, 406, 424, 665
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	114, 783
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	346, 475, 483
MalI	GATC	3 cut(s)	154, 459, 863
MboI	GATC	3 cut(s)	152, 457, 861
MboII	GAAGA	7 cut(s)	50, 91, 301, 526, 529, 601, 782
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	240, 840
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	2 cut(s)	500, 889
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	5 cut(s)	119, 158, 185, 372, 483
MmeI	TCCRAC	3 cut(s)	162, 204, 552
Mox20I	TGGCCA	1 cut(s)	536
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	2 cut(s)	521, 726
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	4 cut(s)	453, 702, 792, 876
Msp20I	TGGCCA	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	4 cut(s)	92, 168, 189, 272
MspR9I	CCNGG	2 cut(s)	250, 421
MvaI	CCWGG	2 cut(s)	250, 421
MvnI	CGCG	2 cut(s)	18, 219
MwoI	GCNNNNNNNGC	7 cut(s)	41, 50, 209, 272, 281, 391, 632
NdeII	GATC	3 cut(s)	152, 457, 861
NlaIII	CATG	2 cut(s)	569, 620
NlaIV	GGNNCC	5 cut(s)	96, 154, 172, 187, 237
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	346, 475, 483
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	620
PauI	GCGCGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	521, 726
PflFI	GACNNNGTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	6 cut(s)	205, 226, 229, 283, 387, 808
PleI	GAGTC	5 cut(s)	118, 158, 184, 371, 482
PpsI	GAGTC	5 cut(s)	118, 158, 184, 371, 482
PscI	ACATGT	1 cut(s)	616
Psp124BI	GAGCTC	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	248, 419
PspGI	CCWGG	2 cut(s)	248, 419
PspN4I	GGNNCC	5 cut(s)	96, 154, 172, 187, 237
PspPI	GGNCC	3 cut(s)	186, 252, 871
PsuI	RGATCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	4 cut(s)	453, 702, 792, 876
SatI	GCNGC	6 cut(s)	204, 225, 228, 282, 386, 807
Sau3AI	GATC	3 cut(s)	152, 457, 861
Sau96I	GGNCC	3 cut(s)	186, 252, 871
SchI	GAGTC	5 cut(s)	119, 158, 185, 372, 483
ScrFI	CCNGG	2 cut(s)	250, 421
SduI	GDGCHC	2 cut(s)	240, 840
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	4 cut(s)	211, 406, 424, 665
SinI	GGWCC	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	841, 875
SmoI	CTYRAG	2 cut(s)	841, 875
Sse9I	AATT	2 cut(s)	500, 889
SsiI	CCGC	4 cut(s)	22, 228, 284, 635
SspMI	CTAG	2 cut(s)	114, 783
SstI	GAGCTC	1 cut(s)	840
StyD4I	CCNGG	2 cut(s)	248, 419
StyI	CCWWGG	3 cut(s)	231, 255, 537
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	860
TasI	AATT	2 cut(s)	500, 889
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	453, 702, 792, 876
Tru9I	TTAA	4 cut(s)	453, 702, 792, 876
TseFI	GTSAC	3 cut(s)	346, 475, 483
TseI	GCWGC	5 cut(s)	203, 224, 281, 385, 806
Tsp45I	GTSAC	3 cut(s)	346, 475, 483
TspDTI	ATGAA	3 cut(s)	527, 602, 771
TspGWI	ACGGA	2 cut(s)	114, 544
Tth111I	GACNNNGTC	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	252
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	521, 726
XspI	CTAG	2 cut(s)	114, 783
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.