Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

3008401 .. 3009312

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGGAGGTGACGCCGCCGCCGAAGGCCACCAAGCCCAGATCGAAGCCCTCGGCTTCTTCTCCTCCGGCGACGGCGAAATCCGGCACGAAGCGTCCTGGTGGCGAGAGCGAGTTGGTTAAGGACTCGAAGAAGGCTAAGAAGAAGGGAGATGATCCAGAGGAGGATGGTGTGGAAGAGGAATCGAAGAAATCGAAACTGTTTCAGAGGCTTTGGAGCGATGAAGATGAGATTATCATTCTGAAAGGGATGAATGAGTACAAAACGAAGAAGGGGGTGGACCCTTATGCTGATATGACTGCATTTCATGAGTTTATCAAGAAATCGTTGAAGGTGGATGTTACTAAGATCCAATTGCAAGATAAGATTCGGAGGATGAGGAAGAAGTTTGAGAACAATGTGAAGAAGAAGCACAAGCCGACTAAGGCTCATGACTCGAAGACTTTCGAGTTGTCGAAGAAGGTGTGGGGAGGTGGTGAAGGGGGTGAAGATTTAACTGGGCAGGTTACTATTGCTTCATTTGGGAAGGGGGAACAGCCCAAGTCTAATGGGAAGGCTAAGGGTAATCAGAAGAGTAACAGCAAGACTTTGGCTGCTCTGAAAGCTGAGCTGTTGGCGTCGCCGGAGACTACAAAGGAAGATGGGAAGAGTGAAGCTTTGCTGAAACCATGTGCATCAGATAGTGTGTTGAGTGACGTTATTGGGTTTCATAAGGGTTTCAAAGAGTTGGGGTTGTCGGAGACTATTGTGAAGCAGGGTATGGAATTGATTGGTGGATCAAAGCGTGCTGATTTGGAGGATAGGTGGAACAAGCTGCATGTTGCTGAATTGGAGCTTTTTGTTCAGAGGACTGAGCTCATGAGAGATCAGGGCAAGTTGATCTTGGAGGCCTTCAAGAAATCAGACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

303

Amino Acids

33.59

Weight (kDa)

9.38

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	68 - 157	1.6e-31	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	239 - 289	1.3e-07	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	2 cut(s)	17, 20
AclWI	GGATC	3 cut(s)	149, 343, 784
AcyI	GRCGYC	2 cut(s)	14, 617
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	331, 721, 895
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	6 cut(s)	605, 610, 656, 814, 835, 856
AluI	AGCT	6 cut(s)	605, 610, 656, 814, 835, 856
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	620, 734
AlwI	GGATC	3 cut(s)	149, 343, 784
AoxI	GGCC	2 cut(s)	27, 888
ApeKI	GCWGC	2 cut(s)	593, 814
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	22, 488, 497
AvaII	GGWCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	858
BbvI	GCAGC	2 cut(s)	580, 801
BccI	CCATC	2 cut(s)	161, 635
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	620, 734
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	17, 20, 594, 815
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	4 cut(s)	18, 21, 595, 816
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	14, 617
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	4 cut(s)	172, 255, 343, 381
BseMII	CTCAG	2 cut(s)	597, 843
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	3 cut(s)	20, 54, 176
BseXI	GCAGC	2 cut(s)	580, 801
BshFI	GGCC	2 cut(s)	29, 890
BsiHKAI	GWGCWC	1 cut(s)	858
BsiSI	CCGG	3 cut(s)	68, 84, 623
BsmAI	GTCTC	2 cut(s)	620, 734
BsnI	GGCC	2 cut(s)	29, 890
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
Bsp1720I	GCTNAGC	1 cut(s)	606
BspACI	CCGC	2 cut(s)	17, 20
BspANI	GGCC	2 cut(s)	29, 890
BspCNI	CTCAG	2 cut(s)	598, 844
BspHI	TCATGA	3 cut(s)	307, 430, 858
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	3 cut(s)	149, 343, 784
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
BssNI	GRCGYC	2 cut(s)	14, 617
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	3 cut(s)	171, 566, 641
BstACI	GRCGYC	2 cut(s)	14, 617
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	6 cut(s)	138, 345, 423, 558, 606, 852
BstF5I	GGATG	4 cut(s)	172, 255, 343, 381
BstKTI	GATC	6 cut(s)	44, 157, 351, 779, 868, 882
BstMAI	GTCTC	2 cut(s)	620, 734
BstMBI	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	580, 801
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	29, 890
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	172, 255, 343, 381
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	786
CciI	TCATGA	3 cut(s)	307, 430, 858
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	3 cut(s)	22, 83, 606
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	308, 431, 669, 818, 859
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	6 cut(s)	138, 345, 423, 558, 606, 852
DpnI	GATC	6 cut(s)	43, 156, 350, 778, 867, 881
DpnII	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
Eam1104I	CTCTTC	3 cut(s)	171, 566, 641
EarI	CTCTTC	3 cut(s)	171, 566, 641
Ecl136II	GAGCTC	1 cut(s)	856
Eco147I	AGGCCT	1 cut(s)	890
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	856
EcoICRI	GAGCTC	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	858
FaeI	CATG	5 cut(s)	311, 434, 672, 821, 862
FaiI	YATR	9 cut(s)	288, 296, 309, 432, 670, 711, 761, 819, 860
FalI	AAGNNNNNCTT	2 cut(s)	866, 898
FatI	CATG	5 cut(s)	307, 430, 668, 817, 858
Fnu4HI	GCNGC	4 cut(s)	17, 20, 594, 815
FokI	GGATG	4 cut(s)	179, 262, 350, 388
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	17, 20, 594, 815
GluI	GCNGC	4 cut(s)	17, 20, 594, 815
HaeIII	GGCC	2 cut(s)	29, 890
HapII	CCGG	3 cut(s)	68, 84, 623
HgaI	GACGC	3 cut(s)	22, 83, 606
Hin1I	GRCGYC	2 cut(s)	14, 617
Hin1II	CATG	5 cut(s)	311, 434, 672, 821, 862
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	4 cut(s)	125, 182, 367, 434
HpaII	CCGG	3 cut(s)	68, 84, 623
HphI	GGTGA	3 cut(s)	22, 488, 497
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	9 cut(s)	207, 243, 372, 570, 600, 679, 739, 846, 904
Hpy188III	TCNNGA	6 cut(s)	158, 308, 319, 431, 859, 895
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	76, 622
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	302, 358, 674, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	6 cut(s)	138, 345, 423, 558, 606, 852
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	2 cut(s)	14, 617
Hsp92II	CATG	5 cut(s)	311, 434, 672, 821, 862
Kzo9I	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
LmnI	GCTCC	2 cut(s)	216, 832
Lsp1109I	GCAGC	2 cut(s)	580, 801
LweI	GCATC	1 cut(s)	683
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	5 cut(s)	10, 340, 505, 575, 692
MalI	GATC	6 cut(s)	43, 156, 350, 778, 867, 881
MboI	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	3 cut(s)	353, 764, 827
MlyI	GAGTC	2 cut(s)	119, 428
MmeI	TCCRAC	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	2 cut(s)	120, 494
MspI	CCGG	3 cut(s)	68, 84, 623
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
NlaIII	CATG	5 cut(s)	311, 434, 672, 821, 862
NlaIV	GGNNCC	1 cut(s)	282
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	10, 692
NspI	RCATGY	1 cut(s)	821
PagI	TCATGA	3 cut(s)	307, 430, 858
PceI	AGGCCT	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 191
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	182, 367
PkrI	GCNGC	4 cut(s)	18, 21, 595, 816
PleI	GAGTC	2 cut(s)	119, 428
PpsI	GAGTC	2 cut(s)	119, 428
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	2 cut(s)	120, 494
SatI	GCNGC	4 cut(s)	17, 20, 594, 815
Sau3AI	GATC	6 cut(s)	41, 154, 348, 776, 865, 879
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	119, 428
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	1 cut(s)	683
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	3 cut(s)	353, 764, 827
SseBI	AGGCCT	1 cut(s)	890
SsiI	CCGC	2 cut(s)	17, 20
SstI	GAGCTC	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	890
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	7 cut(s)	44, 128, 185, 194, 437, 447, 455
TasI	AATT	3 cut(s)	353, 764, 827
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	19, 22
TfiI	GAWTC	2 cut(s)	182, 367
Tru1I	TTAA	2 cut(s)	120, 494
Tru9I	TTAA	2 cut(s)	120, 494
TseFI	GTSAC	2 cut(s)	10, 692
TseI	GCWGC	2 cut(s)	593, 814
Tsp45I	GTSAC	2 cut(s)	10, 692
TspDTI	ATGAA	5 cut(s)	237, 266, 296, 507, 698
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.