Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

20926717 .. 20927545

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAAAGAATAACAAAACTTTTGGCCTCCCACTCTCTCAAAAGTTTGATGGCCAAGAAAAACAAGCGTTCCCAACAGAAGAACAAGTGTCTCAAACCGGAGAAAGATCCATCGACGGTGAAGAGATTGTTGGAAGATCCGCCGAGGAAGAAAAGATATCTACAACCATTGGAAAATCCACCGACGGAATCTTATGGCGACGACGAGAAAATGGAGACTGAGGAAGAAGGAGAAAAATATCTTGGTAAGAATCTTCCGGCTTCTGCTTTTATCATCGTTGCTGCTGAAAGGCATGACTCCGATTCATATTCTGAAACCGAGCTGGAGAAGAAGATTTGCGGTTCCGTTGTTGTAGCCAAGATGAATGATGATAAGATGGTGTCAACAGATACCAAAAAGAAGTATTTTCAAAGAATATTGAGTGATGATGATAAGATCGTCTTGTTGCAAGGCATGGTTGATTTCCAGAATGATAAAGGGACGATTTCTTATGATGATATGACTGGTTTTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATAGTCGTCAATTCACTACCAAAATCCGTCGTTTGAAAGACAAGTTTGTACAGAAAAGGAACAAAGGTGTAGATGAGAACTCTCTAGCAAATGTTGAAATATATGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

219

Amino Acids

25.22

Weight (kDa)

9.06

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	136 - 207	1.4e-19	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	140, 339
AclWI	GGATC	2 cut(s)	101, 131
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	1 cut(s)	597
AgsI	TTSAA	4 cut(s)	410, 542, 583, 644
AjuI	GAANNNNNNNTTGG	4 cut(s)	113, 145, 225, 257
AluBI	AGCT	2 cut(s)	322, 537
AluI	AGCT	2 cut(s)	322, 537
Alw26I	GTCTC	2 cut(s)	95, 209
AlwI	GGATC	2 cut(s)	101, 131
AoxI	GGCC	2 cut(s)	24, 51
ApeKI	GCWGC	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	130, 532
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	43, 118, 370
BcoDI	GTCTC	2 cut(s)	95, 209
BfaI	CTAG	1 cut(s)	632
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	26, 53
BsiSI	CCGG	2 cut(s)	98, 257
BslFI	GGGAC	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	95, 209
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	26, 53
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	106, 136, 435
BspACI	CCGC	2 cut(s)	140, 339
BspANI	GGCC	2 cut(s)	26, 53
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	101, 131
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	3 cut(s)	106, 136, 435
Bst4CI	ACNGT	2 cut(s)	118, 520
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	595
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	109, 139, 438
BstMAI	GTCTC	2 cut(s)	95, 209
BstMBI	GATC	3 cut(s)	106, 136, 435
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	106, 136
BstYI	RGATCY	2 cut(s)	106, 136
BsuRI	GGCC	2 cut(s)	26, 53
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	2 cut(s)	293, 454
CviJI	RGCY	6 cut(s)	26, 53, 260, 322, 356, 537
CviKI_1	RGCY	6 cut(s)	26, 53, 260, 322, 356, 537
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	108, 138, 437
DpnII	GATC	3 cut(s)	106, 136, 435
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	158
EcoRV	GATATC	1 cut(s)	158
FaeI	CATG	2 cut(s)	296, 457
FaiI	YATR	8 cut(s)	195, 294, 307, 455, 492, 500, 649, 651
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	2 cut(s)	292, 453
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	26, 53
HapII	CCGG	2 cut(s)	98, 257
Hin1II	CATG	2 cut(s)	296, 457
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	4 cut(s)	188, 250, 296, 302
HpaII	CCGG	2 cut(s)	98, 257
HphI	GGTGA	2 cut(s)	130, 532
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	3 cut(s)	301, 313, 659
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	5 cut(s)	118, 187, 203, 206, 579
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	118, 520
HpyCH4V	TGCA	1 cut(s)	448
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	296, 457
Kzo9I	GATC	3 cut(s)	106, 136, 435
LpnPI	CCDG	5 cut(s)	111, 270, 308, 479, 489
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	632
MalI	GATC	3 cut(s)	108, 138, 437
MboI	GATC	3 cut(s)	106, 136, 435
MboII	GAAGA	9 cut(s)	91, 133, 146, 160, 236, 245, 340, 343, 535
MflI	RGATCY	2 cut(s)	106, 136
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	37, 138, 214
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	98, 257
NdeII	GATC	3 cut(s)	106, 136, 435
NlaIII	CATG	2 cut(s)	296, 457
NlaIV	GGNNCC	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	188, 250, 302
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	106, 136
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	106, 136, 435
SchI	GAGTC	1 cut(s)	290
SetI	ASST	3 cut(s)	324, 539, 616
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	2 cut(s)	140, 339
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	632
TaaI	ACNGT	2 cut(s)	118, 520
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	557
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	3 cut(s)	188, 250, 302
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 294, 377
TspGWI	ACGGA	3 cut(s)	200, 334, 563
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.