Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

117085 .. 118643

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGACTCCGAAGCAGATCGATTTCTCTTCCTGTGTTGGTGCTGATAACTCCAACGGTACCCTCTCCCATCGAAGATCTCCACGGAATATTCCTTCCTCAAAGCGTGCTGCTTCCGTCGCAGAAGAAGAGACTATGAAGAAGAAGATGAAGATGAAGAAGAAGAAGAAGAAATTGGATCCGCCGTTGATCGTCCGGATCTGGAACGAGGAAGATGAGCTCTCTATCTTAAAGGGGTTAGTTGATTACAGAGCTAAGACAGGATTCAATCCCAAAATTGATTGGGATGCGTTTTGTAGTTTCCTCGGAAGTTCTATCGTTGAGAGATTCTCCAAGGATCAGGTTTTGAGTAAAATCAGGAAGTTGAAAAGGAGGTTTCATGTTCACTCGGAGAAAATCAATCAAGGGAATGATCCCAAATTTACTAGGTCTAGTGATTCTGAAGCCTTTGGGTTTTCTTCGATGATTTGGGGACAAGGTGATGATGATGGTATGGATAAGGAGCACGAGGTAAACGGAAATGGTGCAGCGGAAAACCGGACTAACGAGAGCGGGGAGGAGATGTTGAAGGAGCACGAGGAGGAAGTGGCTAATACTGAACTTTTAAATGAGAATGGGGCAGCCAAAACAACAGAGAATGGGACTAGTAGTGGAAAAGAGAGACATGATGAGGACAATGATGATGATGATGAGTTATGCGCGGTGCAGGATGCATTTGAGGCGGTGATGTCGCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAAATGGTAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAACAAGATTCAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0035326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

302

Amino Acids

34.06

Weight (kDa)

5.84

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	65 - 158	1.7e-28	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	1 cut(s)	701
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	6 cut(s)	182, 530, 552, 701, 722, 876
AclWI	GGATC	5 cut(s)	173, 186, 206, 345, 407
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	268, 367, 568, 853
AhlI	ACTAGT	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	7 cut(s)	220, 254, 766, 775, 865, 883, 896
AluI	AGCT	7 cut(s)	220, 254, 766, 775, 865, 883, 896
Alw21I	GWGCWC	3 cut(s)	222, 507, 576
Alw26I	GTCTC	2 cut(s)	125, 655
AlwI	GGATC	5 cut(s)	173, 186, 206, 345, 407
Aor13HI	TCCGGA	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	110, 527, 620, 763, 893
ApoI	RAATTY	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	16, 491, 736
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	2 cut(s)	506, 575
Bbv12I	GWGCWC	3 cut(s)	222, 507, 576
BbvI	GCAGC	5 cut(s)	97, 539, 632, 775, 905
BccI	CCATC	2 cut(s)	78, 482
BceAI	ACGGC	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	125, 655
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	3 cut(s)	426, 432, 645
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	5 cut(s)	111, 528, 621, 764, 894
BlsI	GCNGC	5 cut(s)	112, 529, 622, 765, 895
BmiI	GGNNCC	2 cut(s)	61, 180
BmsI	GCATC	2 cut(s)	277, 700
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	1 cut(s)	788
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	83, 304, 333, 784
BsaWI	WCCGGW	2 cut(s)	195, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
BseAI	TCCGGA	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	83, 304, 333, 784
BseGI	GGATG	2 cut(s)	292, 715
BseRI	GAGGAG	2 cut(s)	572, 593
BseXI	GCAGC	5 cut(s)	97, 539, 632, 775, 905
BsgI	GTGCAG	2 cut(s)	546, 725
Bsh1236I	CGCG	1 cut(s)	701
BshNI	GGYRCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	3 cut(s)	222, 507, 576
BsiSI	CCGG	2 cut(s)	196, 538
BslFI	GGGAC	2 cut(s)	486, 655
BsmAI	GTCTC	2 cut(s)	125, 655
BsmFI	GGGAC	2 cut(s)	486, 655
Bsp1286I	GDGCHC	3 cut(s)	222, 507, 576
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
BspACI	CCGC	6 cut(s)	182, 530, 552, 701, 722, 876
BspDI	ATCGAT	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	2 cut(s)	61, 180
BspPI	GGATC	5 cut(s)	173, 186, 206, 345, 407
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	552
BssECI	CCNNGG	4 cut(s)	83, 304, 333, 784
BssMI	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
BssSI	CACGAG	2 cut(s)	506, 575
BssT1I	CCWWGG	2 cut(s)	333, 784
Bst2BI	CACGAG	2 cut(s)	506, 575
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	3 cut(s)	34, 123, 796
BstC8I	GCNNGC	2 cut(s)	108, 885
BstDEI	CTNAG	2 cut(s)	255, 866
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	292, 715
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	7 cut(s)	21, 80, 181, 192, 201, 340, 415
BstMAI	GTCTC	2 cut(s)	125, 655
BstMBI	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 719, 772, 884, 893
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	5 cut(s)	97, 539, 632, 775, 905
BstX2I	RGATCY	3 cut(s)	77, 178, 198
BstYI	RGATCY	3 cut(s)	77, 178, 198
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	292, 715
Cac8I	GCNNGC	2 cut(s)	108, 885
CfoI	GCGC	1 cut(s)	701
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	2 cut(s)	380, 665
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	255, 866
DpnI	GATC	7 cut(s)	20, 79, 180, 191, 200, 339, 414
DpnII	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
DraI	TTTAAA	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	34, 123, 796
EarI	CTCTTC	3 cut(s)	34, 123, 796
EciI	GGCGGA	2 cut(s)	171, 865
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	333, 784
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	333, 784
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	333, 784
FaeI	CATG	2 cut(s)	383, 668
FaiI	YATR	6 cut(s)	137, 381, 494, 666, 697, 832
FaqI	GGGAC	2 cut(s)	486, 655
FatI	CATG	2 cut(s)	379, 664
FauI	CCCGC	1 cut(s)	545
Fnu4HI	GCNGC	5 cut(s)	111, 528, 621, 764, 894
FokI	GGATG	2 cut(s)	299, 722
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	111, 528, 621, 764, 894
FspBI	CTAG	3 cut(s)	426, 432, 645
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	5 cut(s)	111, 528, 621, 764, 894
HapII	CCGG	2 cut(s)	196, 538
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	2 cut(s)	383, 668
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HindIII	AAGCTT	2 cut(s)	863, 881
HinfI	GANTC	5 cut(s)	7, 264, 327, 437, 849
HpaII	CCGG	2 cut(s)	196, 538
HphI	GGTGA	3 cut(s)	16, 491, 736
Hpy166II	GTNNAC	2 cut(s)	385, 514
Hpy188I	TCNGA	4 cut(s)	12, 308, 391, 442
Hpy188III	TCNNGA	4 cut(s)	196, 202, 358, 859
Hpy8I	GTNNAC	2 cut(s)	385, 514
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	105, 562
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	527, 706, 713, 763, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 719, 772, 884, 893
HpyF3I	CTNAG	2 cut(s)	255, 866
Hsp92II	CATG	2 cut(s)	383, 668
HspAI	GCGC	1 cut(s)	699
Kpn2I	TCCGGA	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	63
Kzo9I	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
LmnI	GCTCC	2 cut(s)	502, 571
LpnPI	CCDG	8 cut(s)	46, 187, 209, 246, 326, 343, 551, 692
Lsp1109I	GCAGC	5 cut(s)	97, 539, 632, 775, 905
LweI	GCATC	2 cut(s)	277, 700
MaeI	CTAG	3 cut(s)	426, 432, 645
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	7 cut(s)	20, 79, 180, 191, 200, 339, 414
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
MflI	RGATCY	3 cut(s)	77, 178, 198
MhlI	GDGCHC	3 cut(s)	222, 507, 576
MluCI	AATT	3 cut(s)	173, 276, 419
MmeI	TCCRAC	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	715
MroI	TCCGGA	1 cut(s)	195
MseI	TTAA	3 cut(s)	230, 605, 740
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	196, 538
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	5 cut(s)	119, 719, 772, 884, 893
NdeII	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
NlaIII	CATG	2 cut(s)	383, 668
NlaIV	GGNNCC	2 cut(s)	61, 180
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	264, 327, 437, 849
PkrI	GCNGC	5 cut(s)	112, 529, 622, 765, 895
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	61, 180
PsuI	RGATCY	3 cut(s)	77, 178, 198
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	230, 605, 740
SatI	GCNGC	5 cut(s)	111, 528, 621, 764, 894
Sau3AI	GATC	7 cut(s)	18, 77, 178, 189, 198, 337, 412
SduI	GDGCHC	3 cut(s)	222, 507, 576
SfaNI	GCATC	2 cut(s)	277, 700
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	3 cut(s)	173, 276, 419
SsiI	CCGC	6 cut(s)	182, 530, 552, 701, 722, 876
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	426, 432, 645
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	2 cut(s)	333, 784
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	21, 73, 461
TasI	AATT	3 cut(s)	173, 276, 419
TfiI	GAWTC	4 cut(s)	264, 327, 437, 849
Tru1I	TTAA	3 cut(s)	230, 605, 740
Tru9I	TTAA	3 cut(s)	230, 605, 740
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	5 cut(s)	110, 527, 620, 763, 893
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	6 cut(s)	152, 164, 170, 368, 794, 831
TspGWI	ACGGA	3 cut(s)	100, 106, 531
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	3 cut(s)	426, 432, 645
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.