Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

14258399 .. 14259499

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCACCTAAGCGCCCCTCCAATGCAATGAACAATCCCCAGTCGGAGGAGGAGGAGGAGGACGAGGAACCGTCGGCGGAGGAATATAAAACAGCCTCTGAATCCGACTCCGAAACTGAGTCAGAGTCCGAGTCCGGCTCCGTCGGGGAGACAGGAGTGGCCAATGCCAAGCCTATTGCTTCCAAGCACGTGGAGAAGGTTACGCCGCCGCCCAAGGCCACCAAGCCCTCCTCTAGTCAGGCGAAACCCGGTACCAAGCGGCTCGGCGGCGAGAGTGAGTTGATTAAGGACTCCAAGAAGGCTAAGAAGAAGAAGAAGGGAAATGATGAAGAGGACTTGAAGAAGGCCAAGAAGAGGAAGGGAAATGATGAAGAGGACTTGAAGAAGGCCAACAAGAGGAAGGGAAATGATGAAGAGGACTTGAAGAATGCCAATAAGAAGAAGGGAAATGATGAAGAGGACTTGAAGAAGGCCAAGAAGAAGGGGATTGATAAAGAGGACGATGGTGTAGAAGAGGAGTTGGAGAAACCCAAACAGCTGTTCCAGAGGGTTTGGAGCGAGGAAGATGAGATCATTTTGCTTAAAGGCATGAATGAGTACACTATGGAGAAAAGGTTGGACCCTAGTGCAGATGTGAATGCATTTCTTAACTTCATCAAAGGCAAGTTGAAGTTGAATGTTAGCAAGAGCCAGTTACAGGATAAAATTCGCAGAATGAAGAAAAAGTTTGAGAACATTGTGAACAACAAGTACAAACCGACCAATCCTCATGAATGGGCGGCTTTCGAGTTGTCAAAGAATGTGTGGGGAGATGGTGAAGATCCAGCTGGGAAGGTGGAACAGCTCAAGTCTAGTGGGAATGCTCAGAATATGTTGAGGGACGTTCTTGGGTTTGATAACGGTTTCAAAGAGCTTCGGTTGTCGGAAACTATTGTGAACCAAGGTCCGGAGTGGATTGGGGAATCAAACTGTGCTGAACTGCTAAAGGATAGGTGGAACAAGCTGCATGTTGCTGAATTGGAGCATTTTGTTATGAAGGCTGAGCTTATGAGAGATCAGGCCAAGTTGATATTGGAGGCCCTTAAGTCATCAAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

366

Amino Acids

41.33

Weight (kDa)

6.16

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	181 - 270	2.7e-27	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	2 cut(s)	4, 251
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	6 cut(s)	77, 206, 209, 259, 267, 779
AclWI	GGATC	1 cut(s)	815
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	705
AcvI	CACGTG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	253, 599, 752
AfiI	CCNNNNNNNGG	5 cut(s)	46, 354, 396, 697, 946
AflII	CTTAAG	1 cut(s)	1082
AgsI	TTSAA	7 cut(s)	340, 382, 424, 466, 670, 676, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	6 cut(s)	538, 827, 844, 913, 1003, 1045
AluI	AGCT	6 cut(s)	538, 827, 844, 913, 1003, 1045
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	815
AlwNI	CAGNNNCTG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	7 cut(s)	159, 216, 345, 387, 471, 1059, 1077
ApeKI	GCWGC	1 cut(s)	1003
ApoI	RAATTY	1 cut(s)	705
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	619, 944, 1078
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	619, 944
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	4, 251
BbrPI	CACGTG	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	990
BccI	CCATC	2 cut(s)	497, 806
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	234, 624, 852
BfoI	RGCGCY	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	1082
BisI	GCNGC	6 cut(s)	206, 209, 260, 268, 780, 1004
BlpI	GCTNAGC	1 cut(s)	1041
BlsI	GCNGC	6 cut(s)	207, 210, 261, 269, 781, 1005
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	2 cut(s)	619, 944
BmgT120I	GGNCC	3 cut(s)	619, 944, 1078
BmiI	GGNNCC	5 cut(s)	6, 69, 139, 253, 621
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	1041
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	213, 940
BsaWI	WCCGGW	1 cut(s)	946
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 354, 396, 697, 946
Bse1I	ACTGG	2 cut(s)	40, 691
Bse3DI	GCAATG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	946
BseDI	CCNNGG	2 cut(s)	213, 940
BseLI	CCNNNNNNNGG	5 cut(s)	46, 354, 396, 697, 946
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	108, 878, 1032
BseNI	ACTGG	2 cut(s)	40, 691
BseRI	GAGGAG	6 cut(s)	62, 65, 68, 71, 220, 530
BseXI	GCAGC	1 cut(s)	990
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	7 cut(s)	161, 218, 347, 389, 473, 1061, 1079
BshNI	GGYRCC	2 cut(s)	4, 251
BsiSI	CCGG	3 cut(s)	135, 249, 947
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	5 cut(s)	46, 354, 396, 697, 946
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	893
BsmI	GAATGC	3 cut(s)	433, 643, 865
BsnI	GGCC	7 cut(s)	161, 218, 347, 389, 473, 1061, 1079
Bsp13I	TCCGGA	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	570, 820, 1054
Bsp1720I	GCTNAGC	1 cut(s)	1041
BspACI	CCGC	6 cut(s)	77, 206, 209, 259, 267, 779
BspANI	GGCC	7 cut(s)	161, 218, 347, 389, 473, 1061, 1079
BspCNI	CTCAG	3 cut(s)	109, 877, 1033
BspEI	TCCGGA	1 cut(s)	946
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	5 cut(s)	6, 69, 139, 253, 621
BspPI	GGATC	1 cut(s)	815
BspT107I	GGYRCC	2 cut(s)	4, 251
BspTI	CTTAAG	1 cut(s)	1082
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	40, 691
BssECI	CCNNGG	2 cut(s)	213, 940
BssMI	GATC	3 cut(s)	570, 820, 1054
BssT1I	CCWWGG	2 cut(s)	213, 940
Bst4CI	ACNGT	3 cut(s)	72, 902, 971
Bst6I	CTCTTC	6 cut(s)	324, 347, 366, 408, 450, 507
BstAFI	CTTAAG	1 cut(s)	1082
BstBAI	YACGTR	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	9, 117, 303, 864, 1041
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	573, 823, 1057
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	570, 820, 1054
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	990
BstX2I	RGATCY	1 cut(s)	820
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	7 cut(s)	161, 218, 347, 389, 473, 1061, 1079
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	619, 944, 1078
Csp6I	GTAC	3 cut(s)	252, 598, 751
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	3 cut(s)	589, 770, 1007
CviQI	GTAC	3 cut(s)	252, 598, 751
DdeI	CTNAG	5 cut(s)	9, 117, 303, 864, 1041
DpnI	GATC	3 cut(s)	572, 822, 1056
DpnII	GATC	3 cut(s)	570, 820, 1054
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	6 cut(s)	324, 347, 366, 408, 450, 507
EarI	CTCTTC	6 cut(s)	324, 347, 366, 408, 450, 507
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	213, 940
Eco47I	GGWCC	2 cut(s)	619, 944
Eco72I	CACGTG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	1078
EcoT14I	CCWWGG	2 cut(s)	213, 940
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	2 cut(s)	213, 940
FaeI	CATG	3 cut(s)	592, 773, 1010
FaiI	YATR	8 cut(s)	87, 590, 605, 771, 872, 1008, 1034, 1049
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	3 cut(s)	588, 769, 1006
Fnu4HI	GCNGC	6 cut(s)	206, 209, 260, 268, 780, 1004
Fsp4HI	GCNGC	6 cut(s)	206, 209, 260, 268, 780, 1004
FspBI	CTAG	3 cut(s)	234, 624, 852
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	6 cut(s)	206, 209, 260, 268, 780, 1004
GsaI	CCCAGC	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	7 cut(s)	161, 218, 347, 389, 473, 1061, 1079
HapII	CCGG	3 cut(s)	135, 249, 947
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	592, 773, 1010
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	7 cut(s)	101, 107, 119, 125, 131, 290, 962
HpaII	CCGG	3 cut(s)	135, 249, 947
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	3 cut(s)	600, 742, 937
Hpy188I	TCNGA	8 cut(s)	46, 100, 106, 112, 124, 130, 867, 925
Hpy188III	TCNNGA	3 cut(s)	544, 770, 947
Hpy8I	GTNNAC	3 cut(s)	600, 742, 937
Hpy99I	CGWCG	2 cut(s)	76, 146
HpyCH4III	ACNGT	3 cut(s)	72, 902, 971
HpyCH4IV	ACGT	2 cut(s)	189, 882
HpyCH4V	TGCA	4 cut(s)	26, 629, 641, 1006
HpyF3I	CTNAG	5 cut(s)	9, 117, 303, 864, 1041
HpySE526I	ACGT	2 cut(s)	189, 882
Hsp92II	CATG	3 cut(s)	592, 773, 1010
HspAI	GCGC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	946
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	570, 820, 1054
LmnI	GCTCC	3 cut(s)	143, 555, 1021
Lsp1109I	GCAGC	1 cut(s)	990
MaeI	CTAG	3 cut(s)	234, 624, 852
MaeII	ACGT	2 cut(s)	189, 882
MaeIII	GTNAC	2 cut(s)	199, 693
MalI	GATC	3 cut(s)	572, 822, 1056
MboI	GATC	3 cut(s)	570, 820, 1054
MflI	RGATCY	1 cut(s)	820
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	2 cut(s)	705, 1016
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	5 cut(s)	101, 128, 134, 140, 284
MmeI	TCCRAC	5 cut(s)	24, 129, 501, 597, 903
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	643
MroI	TCCGGA	1 cut(s)	946
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	285, 582, 648, 1083
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	538, 827
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	3 cut(s)	135, 249, 947
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	3 cut(s)	433, 643, 865
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	570, 820, 1054
NlaIII	CATG	3 cut(s)	592, 773, 1010
NlaIV	GGNNCC	5 cut(s)	6, 69, 139, 253, 621
NmeAIII	GCCGAG	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	769
PctI	GAATGC	3 cut(s)	433, 643, 865
PfeI	GAWTC	2 cut(s)	101, 962
PkrI	GCNGC	6 cut(s)	207, 210, 261, 269, 781, 1005
PleI	GAGTC	5 cut(s)	101, 127, 133, 139, 284
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	5 cut(s)	101, 127, 133, 139, 284
Ppu21I	YACGTR	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	5 cut(s)	6, 69, 139, 253, 621
PspPI	GGNCC	3 cut(s)	619, 944, 1078
PsrI	GAACNNNNNNTAC	2 cut(s)	734, 766
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	2 cut(s)	538, 827
RsaI	GTAC	3 cut(s)	253, 599, 752
RsaNI	GTAC	3 cut(s)	252, 598, 751
SaqAI	TTAA	4 cut(s)	285, 582, 648, 1083
SatI	GCNGC	6 cut(s)	206, 209, 260, 268, 780, 1004
Sau3AI	GATC	3 cut(s)	570, 820, 1054
Sau96I	GGNCC	3 cut(s)	619, 944, 1078
SchI	GAGTC	5 cut(s)	101, 128, 134, 140, 284
ScrFI	CCNGG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	619, 944
SmlI	CTYRAG	2 cut(s)	845, 1082
SmoI	CTYRAG	2 cut(s)	845, 1082
Sse9I	AATT	2 cut(s)	705, 1016
SsiI	CCGC	6 cut(s)	77, 206, 209, 259, 267, 779
SspMI	CTAG	3 cut(s)	234, 624, 852
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	213, 940
TaaI	ACNGT	3 cut(s)	72, 902, 971
TaiI	ACGT	2 cut(s)	192, 885
TaqI	TCGA	1 cut(s)	786
TasI	AATT	2 cut(s)	705, 1016
TatI	WGTACW	2 cut(s)	597, 750
TauI	GCSGC	5 cut(s)	208, 211, 262, 270, 782
TfiI	GAWTC	2 cut(s)	101, 962
Tru1I	TTAA	4 cut(s)	285, 582, 648, 1083
Tru9I	TTAA	4 cut(s)	285, 582, 648, 1083
TseI	GCWGC	1 cut(s)	1003
TspGWI	ACGGA	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	2 cut(s)	619, 944
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1069
XspI	CTAG	3 cut(s)	234, 624, 852
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.