Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

3269514 .. 3270746

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCACCTAAGCGCCCGTCTCCGTTGGACGAACCGCCGGCCGCTTCTTCATCGGAGGAAGAGGAAGAAGCCTCGTCCGAAGAAGAAGGATCCGGATCCGGATCCGAGGAGTCCGAATCCGATGCCGAACCAACCGAGCCTCAAAAGACCACCTCGACCGCGCAAGCAACTCCCGAGAAGAAGCCGCAAGCGAAGAAGCCGGAATCCGCCGCGAAGCCTCAGTCTTCTTCCTCCGGCGAGACCGAAACCGAGTCTGAATCGGAATCCGACGGTGACACGCTCGCCCAGCGCAGAGTCAATGTCAAGCCGATCGCGTCCAAGCCGATGGAGGAGGTGACGCCGCCGCCGAAGGCAACCAAACCCAGATCGAAGCCGTCGGCTTCTTCTCCTCCGGCGACGGCGAAATCCGGTACGAAGCGGCCGGGCGGCGAGAGCGAGTTGGTTAAGGACTCGAAGAAGGCTAAGAAGAAGGGAGATGATCCAGAGGAGGATGGTGTAGAAGAGGAATCGAAGAAATCGAAACTGTTTCAGAGGCTTTGGAGCGATGAAGATGAGATTATTATTCTGAAAGGGATGAATGAGTACAAAACGAAGAAAGGGGTGGATCCTTATGCTGATATGACTGCATTTCATGAGTTTATCAAGAAATCACTGAAGGTGGATGTTACTAAGATCCAATTGCAAGATAAGATTCGGAGGATGAGGAAGAAGTTTGAGAACAATGTGAAGAAGAAGCACAAGCCGACTAAGGCTCATGACTCGAAGACTTTCGAGTTGTCGAAGAAGGTGTGGGGAGGTGGTGAAGGGGGTGAAGATTTAACTGGGCAGGTTACTATTGCTTCATTTGGGAAGGGGGAACAGCCCAAGTCTAATGGGAAGGCTAAAGGTAATCAGAAGAGTAACAGCAAGACTTTGGCTGCTCTGAAAGCTGAGCTGTTGGCATCGCCGGAGCCTACAAAGGAAGATGGGAAGAGTGAAGCTGAAAAGCCGTGTGCATCAGACAGTGTGTTGAGTGAGGTTATTGGGTTTCATAAGGGTTTTAAAGAGTTGGGCTTGCCGGAGACTATTGTGAAGCAGGGTATGAAATTGATTGGTGGATCAAAGCGTGCTGATTTGGAGGATAGGTGGAACAAGCTGCATGTTGCTGAATTGGAGCTTTTTGTTCAGAGGACTGAGCTCATGAGAGATCAGGGCAAGTTGATCTTGGAGGCCTTAAAGAAATCAGACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

411

Amino Acids

44.73

Weight (kDa)

7.06

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	176 - 265	2.7e-31	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	346 - 396	6.6e-07	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	817
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	161, 212, 314
AccIII	TCCGGA	2 cut(s)	92, 98
AcoI	YGGCCR	2 cut(s)	39, 419
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	412, 584
AluBI	AGCT	6 cut(s)	929, 934, 980, 1135, 1156, 1177
AluI	AGCT	6 cut(s)	929, 934, 980, 1135, 1156, 1177
Alw21I	GWGCWC	1 cut(s)	1179
Alw26I	GTCTC	3 cut(s)	24, 233, 1055
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	2 cut(s)	92, 98
AoxI	GGCC	3 cut(s)	39, 419, 1209
ApeKI	GCWGC	2 cut(s)	917, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	1 cut(s)	767
AspLEI	GCGC	3 cut(s)	15, 163, 291
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	4 cut(s)	284, 346, 812, 821
AvaI	CYCGRG	1 cut(s)	173
BamHI	GGATCC	4 cut(s)	89, 95, 101, 604
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	1179
BbsI	GAAGAC	2 cut(s)	216, 770
Bbv12I	GWGCWC	1 cut(s)	1179
BbvI	GCAGC	2 cut(s)	904, 1122
BccI	CCATC	3 cut(s)	319, 485, 959
BceAI	ACGGC	3 cut(s)	358, 414, 973
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	24, 233, 1055
BfoI	RGCGCY	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	9 cut(s)	42, 185, 210, 341, 344, 419, 427, 918, 1136
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	9 cut(s)	43, 186, 211, 342, 345, 420, 428, 919, 1137
Bme1390I	CCNGG	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	6 cut(s)	6, 91, 97, 103, 606, 951
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	3 cut(s)	112, 950, 1004
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	2 cut(s)	216, 770
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuMI	CCSGG	1 cut(s)	423
BsaBI	GATNNNNATC	2 cut(s)	94, 100
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	3 cut(s)	92, 98, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	1109, 1139
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	826
Bse8I	GATNNNNATC	2 cut(s)	94, 100
BseAI	TCCGGA	2 cut(s)	92, 98
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	4 cut(s)	496, 579, 667, 705
BseJI	GATNNNNATC	2 cut(s)	94, 100
BseMII	CTCAG	3 cut(s)	233, 921, 1164
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	4 cut(s)	122, 344, 378, 500
BseX3I	CGGCCG	2 cut(s)	39, 419
BseXI	GCAGC	2 cut(s)	904, 1122
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	3 cut(s)	161, 212, 314
Bsh1285I	CGRYCG	4 cut(s)	42, 159, 312, 422
BshFI	GGCC	3 cut(s)	41, 421, 1211
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	4 cut(s)	42, 159, 312, 422
BsiHKAI	GWGCWC	1 cut(s)	1179
BsiHKCI	CYCGRG	1 cut(s)	173
BsmAI	GTCTC	3 cut(s)	24, 233, 1055
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	41, 421, 1211
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	1179
Bsp13I	TCCGGA	2 cut(s)	92, 98
Bsp1720I	GCTNAGC	1 cut(s)	930
BspANI	GGCC	3 cut(s)	41, 421, 1211
BspCNI	CTCAG	3 cut(s)	232, 922, 1165
BspEI	TCCGGA	2 cut(s)	92, 98
BspFNI	CGCG	3 cut(s)	161, 212, 314
BspHI	TCATGA	3 cut(s)	631, 754, 1179
BspLI	GGNNCC	6 cut(s)	6, 91, 97, 103, 606, 951
BspMI	ACCTGC	1 cut(s)	817
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	272, 525, 1004
Bst6I	CTCTTC	4 cut(s)	54, 495, 890, 965
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	6 cut(s)	39, 165, 189, 282, 1055, 1107
BstDEI	CTNAG	7 cut(s)	9, 219, 462, 669, 747, 930, 1173
BstF5I	GGATG	4 cut(s)	496, 579, 667, 705
BstFNI	CGCG	3 cut(s)	161, 212, 314
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	3 cut(s)	15, 163, 291
BstMAI	GTCTC	3 cut(s)	24, 233, 1055
BstMCI	CGRYCG	4 cut(s)	42, 159, 312, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 432, 926
BstNSI	RCATGY	1 cut(s)	1142
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	3 cut(s)	161, 212, 314
BstV1I	GCAGC	2 cut(s)	904, 1122
BstV2I	GAAGAC	2 cut(s)	216, 770
BstX2I	RGATCY	5 cut(s)	89, 95, 101, 604, 672
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	5 cut(s)	89, 95, 101, 604, 672
BstZI	CGGCCG	2 cut(s)	39, 419
BsuRI	GGCC	3 cut(s)	41, 421, 1211
BtgZI	GCGATG	2 cut(s)	558, 927
BtsCI	GGATG	4 cut(s)	496, 579, 667, 705
BtsIMutI	CAGTG	2 cut(s)	650, 1009
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	6 cut(s)	39, 165, 189, 282, 1055, 1107
CciI	TCATGA	3 cut(s)	631, 754, 1179
CfoI	GCGC	3 cut(s)	15, 163, 291
Cfr10I	RCCGGY	1 cut(s)	37
CseI	GACGC	2 cut(s)	303, 346
Csp6I	GTAC	2 cut(s)	411, 583
CviAII	CATG	4 cut(s)	632, 755, 1139, 1180
CviQI	GTAC	2 cut(s)	411, 583
DdeI	CTNAG	7 cut(s)	9, 219, 462, 669, 747, 930, 1173
DraI	TTTAAA	1 cut(s)	1042
EaeI	YGGCCR	2 cut(s)	39, 419
EagI	CGGCCG	2 cut(s)	39, 419
Eam1104I	CTCTTC	4 cut(s)	54, 495, 890, 965
EarI	CTCTTC	4 cut(s)	54, 495, 890, 965
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	1177
EclXI	CGGCCG	2 cut(s)	39, 419
Eco147I	AGGCCT	1 cut(s)	1211
Eco24I	GRGCYC	1 cut(s)	1179
Eco31I	GGTCTC	1 cut(s)	233
Eco52I	CGGCCG	2 cut(s)	39, 419
Eco53kI	GAGCTC	1 cut(s)	1177
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	1177
EcoT38I	GRGCYC	1 cut(s)	1179
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	4 cut(s)	635, 758, 1142, 1183
FaiI	YATR	8 cut(s)	612, 620, 633, 756, 1032, 1082, 1140, 1181
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FatI	CATG	4 cut(s)	631, 754, 1138, 1179
Fnu4HI	GCNGC	9 cut(s)	42, 185, 210, 341, 344, 419, 427, 918, 1136
FokI	GGATG	4 cut(s)	503, 586, 674, 712
FriOI	GRGCYC	1 cut(s)	1179
Fsp4HI	GCNGC	9 cut(s)	42, 185, 210, 341, 344, 419, 427, 918, 1136
GlaI	GCGC	3 cut(s)	14, 162, 290
GluI	GCNGC	9 cut(s)	42, 185, 210, 341, 344, 419, 427, 918, 1136
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	41, 421, 1211
HgaI	GACGC	2 cut(s)	303, 346
HhaI	GCGC	3 cut(s)	15, 163, 291
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	635, 758, 1142, 1183
Hin6I	GCGC	3 cut(s)	13, 161, 289
HinP1I	GCGC	3 cut(s)	13, 161, 289
HphI	GGTGA	4 cut(s)	284, 346, 812, 821
Hpy188III	TCNNGA	8 cut(s)	93, 99, 173, 482, 632, 643, 755, 1180
Hpy99I	CGWCG	3 cut(s)	272, 379, 400
HpyAV	CCTTC	9 cut(s)	80, 343, 451, 463, 649, 778, 797, 844, 871
HpyCH4III	ACNGT	3 cut(s)	272, 525, 1004
HpyCH4V	TGCA	4 cut(s)	626, 682, 995, 1138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 432, 926
HpyF3I	CTNAG	7 cut(s)	9, 219, 462, 669, 747, 930, 1173
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	4 cut(s)	635, 758, 1142, 1183
HspAI	GCGC	3 cut(s)	13, 161, 289
Kpn2I	TCCGGA	2 cut(s)	92, 98
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	540, 949, 1153
Lsp1109I	GCAGC	2 cut(s)	904, 1122
LweI	GCATC	3 cut(s)	112, 950, 1004
MaeIII	GTNAC	5 cut(s)	272, 334, 664, 829, 899
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	5 cut(s)	89, 95, 101, 604, 672
MhlI	GDGCHC	1 cut(s)	1179
MluCI	AATT	3 cut(s)	677, 1085, 1148
MlyI	GAGTC	5 cut(s)	119, 260, 303, 443, 752
MmeI	TCCRAC	2 cut(s)	6, 291
MroI	TCCGGA	2 cut(s)	92, 98
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	767
MseI	TTAA	4 cut(s)	444, 818, 1041, 1214
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	677
MvnI	CGCG	3 cut(s)	161, 212, 314
MwoI	GCNNNNNNNGC	3 cut(s)	286, 432, 926
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	423
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	635, 758, 1142, 1183
NlaIV	GGNNCC	6 cut(s)	6, 91, 97, 103, 606, 951
NmuCI	GTSAC	2 cut(s)	272, 334
NspI	RCATGY	1 cut(s)	1142
PagI	TCATGA	3 cut(s)	631, 754, 1179
PceI	AGGCCT	1 cut(s)	1211
PcsI	WCGNNNNNNNCGW	2 cut(s)	344, 515
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	6 cut(s)	116, 203, 257, 263, 506, 691
PkrI	GCNGC	9 cut(s)	43, 186, 211, 342, 345, 420, 428, 919, 1137
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	5 cut(s)	118, 259, 302, 443, 752
PpsI	GAGTC	5 cut(s)	118, 259, 302, 443, 752
Psp124BI	GAGCTC	1 cut(s)	1179
PspFI	CCCAGC	1 cut(s)	285
PspN4I	GGNNCC	6 cut(s)	6, 91, 97, 103, 606, 951
PsuI	RGATCY	5 cut(s)	89, 95, 101, 604, 672
PvuI	CGATCG	1 cut(s)	312
RsaI	GTAC	2 cut(s)	412, 584
RsaNI	GTAC	2 cut(s)	411, 583
SacI	GAGCTC	1 cut(s)	1179
SaqAI	TTAA	4 cut(s)	444, 818, 1041, 1214
SatI	GCNGC	9 cut(s)	42, 185, 210, 341, 344, 419, 427, 918, 1136
SchI	GAGTC	5 cut(s)	119, 260, 303, 443, 752
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	1179
SfaNI	GCATC	3 cut(s)	112, 950, 1004
Sse9I	AATT	3 cut(s)	677, 1085, 1148
SseBI	AGGCCT	1 cut(s)	1211
SstI	GAGCTC	1 cut(s)	1179
StuI	AGGCCT	1 cut(s)	1211
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	272, 525, 1004
TaqI	TCGA	8 cut(s)	155, 368, 452, 509, 518, 761, 771, 779
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	677, 1085, 1148
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	7 cut(s)	44, 187, 212, 343, 346, 421, 429
TfiI	GAWTC	6 cut(s)	116, 203, 257, 263, 506, 691
Tru1I	TTAA	4 cut(s)	444, 818, 1041, 1214
Tru9I	TTAA	4 cut(s)	444, 818, 1041, 1214
TscAI	CASTG	2 cut(s)	657, 1009
TseFI	GTSAC	2 cut(s)	272, 334
TseI	GCWGC	2 cut(s)	917, 1135
Tsp45I	GTSAC	2 cut(s)	272, 334
TspDTI	ATGAA	7 cut(s)	39, 561, 590, 620, 831, 1019, 1097
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	2 cut(s)	657, 1009
XceI	RCATGY	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.