Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

24045774 .. 24048183

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATCAATGGGGTTGATATGGATGCCTTTTACGAGTTTGTTAATGACTCGCTCAGTGTGAGTGTTAGGAAGTCACAGATGCAAGAGAAGGTGAAGCAGATGAAGAAGAAGTACAACAACATGGCCAAAATGAAGACTTCCATGCCCAAACAGGGCCATGAGTTGGAGGGTGACAAGGCCAAGGGTTTGGCTTATCGTCAGGCTTCAAAGGAGGCATTTGCATCAGTTGCTCTTTTTTACGAGACAGTTGTATTTGACAATGCTCTTAAAAAGCTAGGGTTTTGGGAGAGTTTTGTGAAGCAATGTTTGGGGTTAACTGATAAGTCAAACCGTGCAGAGCTAAATGATAGGAAGAAGCCATTGACTCTGCTTCTCCTGGAACTGAGCAAGCCACTTCCTCCCAACTCAAGAAGCAGCCGAAATCTAGCAAGCCTCAATCTTCTCCCTCCTTTTCCTGCGAGACTAGGTTTGAATCCGACTTCGTGTCTGAAGGGACGGATGAGTGGATGCAGTAGCCCATCAAGATTAGGTCTATGGCGGCCTCAACTAATACGATGGCGGCATGGAAGAAACGTTCTAACGGAGGTGACGAAGGATGTGGGAAAGAAGACCAAGAAGAATGCGCAAGAGGCTGAGAGGAATGAGGAGTTTGAGAAGTCGAAATCGCAGATGCAAGAGAAGGTGAAACGGATGAAGAAGAAGTACAACAACATGGGTAGCAAGGCCAAGGGTTTGGCATATCGTCAGGCTTCAAAGGAGGCATTCACATCAGTTGCTCTTTTGTATGAGACGTATCTGGGTTGTATGGAAGGAGAGGAATGCTACAGTGTGGAAAGGGAAGAAAATGTTAATTACAAGGTCAATGTTAAGTTAGCAGACTACAAGTTCCATAACAAGCCAGTTTCAGCAGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

306

Amino Acids

34.71

Weight (kDa)

9.74

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	6 - 47	2.5e-09	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	624
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	2 cut(s)	538, 559
AclI	AACGTT	1 cut(s)	573
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	113, 704
AfiI	CCNNNNNNNGG	2 cut(s)	152, 163
AgsI	TTSAA	3 cut(s)	207, 472, 753
AhdI	GACNNNNNGTC	1 cut(s)	483
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	3 cut(s)	274, 340, 911
AluI	AGCT	3 cut(s)	274, 340, 911
Alw26I	GTCTC	3 cut(s)	236, 454, 782
AoxI	GGCC	5 cut(s)	123, 154, 177, 539, 723
ApeKI	GCWGC	2 cut(s)	414, 908
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	4 cut(s)	103, 182, 598, 694
BalI	TGGCCA	1 cut(s)	125
BarI	GAAGNNNNNNTAC	4 cut(s)	95, 127, 686, 718
BbsI	GAAGAC	2 cut(s)	140, 614
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	2 cut(s)	526, 549
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	236, 454, 782
BfaI	CTAG	3 cut(s)	275, 425, 464
BfmI	CTRYAG	1 cut(s)	823
BisI	GCNGC	4 cut(s)	415, 539, 560, 909
BlsI	GCNGC	4 cut(s)	416, 540, 561, 910
Bme1390I	CCNGG	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	5 cut(s)	13, 69, 230, 497, 660
BpiI	GAAGAC	2 cut(s)	140, 614
BpuEI	CTTGAG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	180, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 163
Bse1I	ACTGG	1 cut(s)	899
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	180, 726
BseGI	GGATG	5 cut(s)	28, 504, 512, 601, 696
BseLI	CCNNNNNNNGG	2 cut(s)	152, 163
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	3 cut(s)	67, 374, 624
BseNI	ACTGG	1 cut(s)	899
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	125, 156, 179, 541, 725
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	152, 163
BsmAI	GTCTC	3 cut(s)	236, 454, 782
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	3 cut(s)	625, 761, 824
BsnI	GGCC	5 cut(s)	125, 156, 179, 541, 725
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	538, 559
BspANI	GGCC	5 cut(s)	125, 156, 179, 541, 725
BspCNI	CTCAG	3 cut(s)	66, 375, 625
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	899
BssECI	CCNNGG	2 cut(s)	180, 726
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	2 cut(s)	180, 726
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	247, 332, 827
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	389, 430
BstDEI	CTNAG	3 cut(s)	53, 383, 633
BstF5I	GGATG	5 cut(s)	28, 504, 512, 601, 696
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	3 cut(s)	236, 454, 782
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 629
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	823
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	2 cut(s)	140, 614
BstXI	CCANNNNNNTGG	2 cut(s)	187, 733
BsuRI	GGCC	5 cut(s)	125, 156, 179, 541, 725
BtsCI	GGATG	5 cut(s)	28, 504, 512, 601, 696
BtsIMutI	CAGTG	2 cut(s)	61, 832
Cac8I	GCNNGC	2 cut(s)	389, 430
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	112, 703
CviAII	CATG	5 cut(s)	121, 142, 158, 563, 712
CviQI	GTAC	2 cut(s)	112, 703
DdeI	CTNAG	3 cut(s)	53, 383, 633
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DriI	GACNNNNNGTC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	180, 726
Eco57I	CTGAAG	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	180, 726
ErhI	CCWWGG	2 cut(s)	180, 726
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	5 cut(s)	124, 145, 161, 566, 715
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	5 cut(s)	120, 141, 157, 562, 711
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	415, 539, 560, 909
FokI	GGATG	5 cut(s)	35, 511, 519, 608, 703
Fsp4HI	GCNGC	4 cut(s)	415, 539, 560, 909
FspBI	CTAG	3 cut(s)	275, 425, 464
FspI	TGCGCA	1 cut(s)	624
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	4 cut(s)	415, 539, 560, 909
HaeIII	GGCC	5 cut(s)	125, 156, 179, 541, 725
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	5 cut(s)	124, 145, 161, 566, 715
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	47, 364, 472
HpaI	GTTAAC	1 cut(s)	315
HphI	GGTGA	4 cut(s)	103, 182, 598, 694
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	477, 489
Hpy188III	TCNNGA	2 cut(s)	408, 522
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	5 cut(s)	82, 484, 586, 673, 803
HpyCH4III	ACNGT	3 cut(s)	247, 332, 827
HpyCH4IV	ACGT	2 cut(s)	573, 791
HpyCH4V	TGCA	5 cut(s)	82, 221, 335, 510, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 629
HpyF3I	CTNAG	3 cut(s)	53, 383, 633
HpySE526I	ACGT	2 cut(s)	573, 791
Hsp92II	CATG	5 cut(s)	124, 145, 161, 566, 715
HspAI	GCGC	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	8 cut(s)	137, 185, 362, 389, 468, 731, 782, 912
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	5 cut(s)	13, 69, 230, 497, 660
MaeI	CTAG	3 cut(s)	275, 425, 464
MaeII	ACGT	2 cut(s)	573, 791
MaeIII	GTNAC	3 cut(s)	72, 170, 586
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	850
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	41, 358
MmeI	TCCRAC	2 cut(s)	144, 500
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	5 cut(s)	42, 267, 314, 849, 867
Msp20I	TGGCCA	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	3 cut(s)	625, 761, 824
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	227, 629
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	5 cut(s)	124, 145, 161, 566, 715
NmuCI	GTSAC	3 cut(s)	72, 170, 586
NsbI	TGCGCA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PctI	GAATGC	3 cut(s)	625, 761, 824
PfeI	GAWTC	1 cut(s)	472
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	416, 540, 561, 910
PleI	GAGTC	2 cut(s)	41, 358
PpsI	GAGTC	2 cut(s)	41, 358
Psp1406I	AACGTT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	113, 704
RsaNI	GTAC	2 cut(s)	112, 703
SaqAI	TTAA	5 cut(s)	42, 267, 314, 849, 867
SatI	GCNGC	4 cut(s)	415, 539, 560, 909
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	41, 358
ScrFI	CCNGG	1 cut(s)	377
SfaNI	GCATC	5 cut(s)	13, 69, 230, 497, 660
SfcI	CTRYAG	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	850
SsiI	CCGC	2 cut(s)	538, 559
SspMI	CTAG	3 cut(s)	275, 425, 464
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	180, 726
TaaI	ACNGT	3 cut(s)	247, 332, 827
TaiI	ACGT	2 cut(s)	576, 794
TaqI	TCGA	1 cut(s)	659
TasI	AATT	1 cut(s)	850
TatI	WGTACW	2 cut(s)	111, 702
TauI	GCSGC	2 cut(s)	541, 562
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	5 cut(s)	42, 267, 314, 849, 867
Tru9I	TTAA	5 cut(s)	42, 267, 314, 849, 867
TscAI	CASTG	2 cut(s)	61, 832
TseFI	GTSAC	3 cut(s)	72, 170, 586
TseI	GCWGC	2 cut(s)	414, 908
Tsp45I	GTSAC	3 cut(s)	72, 170, 586
TspDTI	ATGAA	4 cut(s)	116, 146, 707, 903
TspGWI	ACGGA	3 cut(s)	511, 596, 703
TspRI	CASTG	2 cut(s)	61, 832
Van91I	CCANNNNNTGG	1 cut(s)	163
XspI	CTAG	3 cut(s)	275, 425, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.