Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

1374611 .. 1375801

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G029400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCACCCAAGCGCCCATCTCCTCTGGATGAGCCTCCGGCTGCTTCTTCTTCAGAAGAAGAGGTAGCCTCGTCTGAAGAAGAAGTAGACGGAGAAGAAGAGGAAGAATCCGAATCCGAGTCCGACGAACCTGAGCCTCCAAAGGCAACACCCACTCCTGTTGCTGAAAATAAACCACCACCGAAGAAACCGGACTCGGCTACTGTCAATTCAAAGCCGCAGTCTTCATCCTCTGGCTCAGAGTTCAAGTTCGAATCCGATTCGGAATTGGATAAGGATATGGTGGTAAAGCCGGTATCTTCGAAGCCAATGGAAGAGACGCCCAAGACCAAGAAGCCCAGATCGAAGGCCTCGGCTACTACTACGCCGGCGGCAAGAGCTGGGTCGAAGCGGCCAGGCGAGAGCGACCCCAAGGATTCCAAGAGGCCCAAAAAGAAGATCCCAGACTCGGATCAGGAGCCAGACCATGCCGGAGAGGAAATGAAGAAGGCGGGCATGATTGATTACTCTACGAAGAAAGGGGCGGACCCATATTCTGATATGGGTGCGGTTCATGATTTTATCAAGAAATCGTTGAAGGCCGATGTGAACAAGACCCAAGTGCAAGATAAGATTCGTAGGTTGAAGAAGAAGTATGAGATGAATGTGGCCAAAGGGAAGAAGTATAATCCTGTTAAGCCTCATGAGCAAAAGGTGTTCGACTTGTCGAAAAAGGTATGGGGCAGCGGCGAAGGGTCCATTGGGGTCAGTGGGTTGTCTGAACAGTCCAATTCTAATGGGAAGGCTAGGACAAATCAGAAGGGTAACAACATGACTTTGGCTTCACTTAAAGCTGAGCTTTTGAGTTCACCGGAGCCCCAAAAAGAGTGTGAGAAGGTGGAATTTGGTTCTGAAAGTTTGAGTGAGGTGATTGGGTATGATAAGGGTTTCAGAGAACTAGGGTTGCCGGAGGGTGTTGTGAAGCAGGGCTTGGAGTTGATTGGAGGAGCCAAGCGAGCTGAGCTGAAGGAGAAGTGGAAGAAGCTGCATGTTGCTGAATTGGACCTTTTTGTGAAAAGGAGTGAGTTGATAAGAGATCAGGCTAAGGTGATTCTGGAGGCGTTAAAGTCATCTAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

374

Amino Acids

40.81

Weight (kDa)

7.01

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	7 cut(s)	218, 371, 391, 491, 524, 548, 726
AclWI	GGATC	2 cut(s)	433, 459
AcoI	YGGCCR	2 cut(s)	392, 648
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	3 cut(s)	36, 96, 1025
AcyI	GRCGYC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	213, 247, 577, 625
AjnI	CCWGG	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	4 cut(s)	723, 755, 953, 985
AluBI	AGCT	6 cut(s)	380, 833, 838, 998, 1003, 1024
AluI	AGCT	6 cut(s)	380, 833, 838, 998, 1003, 1024
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	433, 459
AoxI	GGCC	5 cut(s)	348, 392, 425, 579, 648
ApeKI	GCWGC	3 cut(s)	41, 723, 1024
ApoI	RAATTY	1 cut(s)	881
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	4 cut(s)	426, 526, 735, 1042
AsuHPI	GGTGA	3 cut(s)	840, 919, 1099
AsuII	TTCGAA	2 cut(s)	252, 302
AvaII	GGWCC	3 cut(s)	526, 735, 1042
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	28, 735, 1011
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	786, 938
BfoI	RGCGCY	1 cut(s)	16
BisI	GCNGC	7 cut(s)	42, 218, 372, 392, 724, 727, 1025
BlpI	GCTNAGC	2 cut(s)	834, 999
BlsI	GCNGC	7 cut(s)	43, 219, 373, 393, 725, 728, 1026
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	3 cut(s)	526, 735, 1042
BmgT120I	GGNCC	4 cut(s)	426, 526, 735, 1042
BmiI	GGNNCC	6 cut(s)	6, 459, 528, 736, 855, 988
BmrFI	CCNGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	1115
Bpu10I	CCTNAGC	2 cut(s)	132, 1083
Bpu1102I	GCTNAGC	2 cut(s)	834, 999
Bpu14I	TTCGAA	2 cut(s)	252, 302
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	351, 411
BsaWI	WCCGGW	2 cut(s)	190, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	2 cut(s)	292, 367
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	351, 411
BseGI	GGATG	2 cut(s)	34, 227
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	4 cut(s)	123, 252, 825, 990
BseRI	GAGGAG	2 cut(s)	12, 999
BseXI	GCAGC	3 cut(s)	28, 735, 1011
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	5 cut(s)	350, 394, 427, 581, 650
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	7 cut(s)	38, 191, 293, 368, 471, 851, 947
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	5 cut(s)	350, 394, 427, 581, 650
Bsp119I	TTCGAA	2 cut(s)	252, 302
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	4 cut(s)	341, 438, 451, 1075
Bsp1720I	GCTNAGC	2 cut(s)	834, 999
BspACI	CCGC	7 cut(s)	218, 371, 391, 491, 524, 548, 726
BspANI	GGCC	5 cut(s)	350, 394, 427, 581, 650
BspCNI	CTCAG	4 cut(s)	124, 251, 826, 991
BspHI	TCATGA	2 cut(s)	553, 682
BspLI	GGNNCC	6 cut(s)	6, 459, 528, 736, 855, 988
BspPI	GGATC	2 cut(s)	433, 459
BspT104I	TTCGAA	2 cut(s)	252, 302
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	2 cut(s)	292, 367
BssAI	RCCGGY	2 cut(s)	292, 367
BssECI	CCNNGG	2 cut(s)	351, 411
BssMI	GATC	4 cut(s)	341, 438, 451, 1075
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	205, 765
Bst6I	CTCTTC	3 cut(s)	54, 93, 309
BstACI	GRCGYC	1 cut(s)	320
BstBI	TTCGAA	2 cut(s)	252, 302
BstC8I	GCNNGC	3 cut(s)	369, 493, 996
BstDEI	CTNAG	6 cut(s)	132, 238, 834, 999, 1083, 1113
BstF5I	GGATG	2 cut(s)	34, 227
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	344, 441, 454, 1078
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	4 cut(s)	341, 438, 451, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 685, 995, 1000
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	28, 735, 1011
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	350, 394, 427, 581, 650
BtsCI	GGATG	2 cut(s)	34, 227
BtsIMutI	CAGTG	1 cut(s)	754
Cac8I	GCNNGC	3 cut(s)	369, 493, 996
CciI	TCATGA	2 cut(s)	553, 682
CfoI	GCGC	1 cut(s)	15
Cfr10I	RCCGGY	2 cut(s)	292, 367
Cfr13I	GGNCC	4 cut(s)	426, 526, 735, 1042
CseI	GACGC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	6 cut(s)	467, 496, 554, 683, 811, 1028
DdeI	CTNAG	6 cut(s)	132, 238, 834, 999, 1083, 1113
DpnI	GATC	4 cut(s)	343, 440, 453, 1077
DpnII	GATC	4 cut(s)	341, 438, 451, 1075
EaeI	YGGCCR	2 cut(s)	392, 648
Eam1104I	CTCTTC	3 cut(s)	54, 93, 309
EarI	CTCTTC	3 cut(s)	54, 93, 309
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	3 cut(s)	526, 735, 1042
Eco57I	CTGAAG	3 cut(s)	36, 96, 1025
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	6 cut(s)	470, 499, 557, 686, 814, 1031
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 953, 985
FatI	CATG	6 cut(s)	466, 495, 553, 682, 810, 1027
FauI	CCCGC	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	7 cut(s)	42, 218, 372, 392, 724, 727, 1025
FokI	GGATG	2 cut(s)	41, 214
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	7 cut(s)	42, 218, 372, 392, 724, 727, 1025
FspBI	CTAG	2 cut(s)	786, 938
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	7 cut(s)	42, 218, 372, 392, 724, 727, 1025
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	1115
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	5 cut(s)	350, 394, 427, 581, 650
HapII	CCGG	7 cut(s)	38, 191, 293, 368, 471, 851, 947
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	6 cut(s)	470, 499, 557, 686, 814, 1031
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HpaII	CCGG	7 cut(s)	38, 191, 293, 368, 471, 851, 947
HphI	GGTGA	3 cut(s)	840, 919, 1099
Hpy166II	GTNNAC	3 cut(s)	88, 589, 848
Hpy188III	TCNNGA	6 cut(s)	26, 455, 554, 565, 683, 1094
Hpy8I	GTNNAC	3 cut(s)	88, 589, 848
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	8 cut(s)	340, 481, 571, 725, 775, 793, 868, 1000
HpyCH4III	ACNGT	2 cut(s)	205, 765
HpyCH4V	TGCA	2 cut(s)	604, 1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 685, 995, 1000
HpyF3I	CTNAG	6 cut(s)	132, 238, 834, 999, 1083, 1113
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	6 cut(s)	470, 499, 557, 686, 814, 1031
HspAI	GCGC	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	341, 438, 451, 1075
LmnI	GCTCC	3 cut(s)	457, 853, 986
Lsp1109I	GCAGC	3 cut(s)	28, 735, 1011
MaeI	CTAG	2 cut(s)	786, 938
MaeIII	GTNAC	1 cut(s)	803
MalI	GATC	4 cut(s)	343, 440, 453, 1077
MboI	GATC	4 cut(s)	341, 438, 451, 1075
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	858
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	5 cut(s)	208, 266, 769, 881, 1037
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	3 cut(s)	128, 188, 440
MmeI	TCCRAC	1 cut(s)	147
Mox20I	TGGCCA	1 cut(s)	650
MreI	CGCCGGCG	1 cut(s)	367
MroNI	GCCGGC	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	3 cut(s)	675, 828, 1103
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	726
MspI	CCGG	7 cut(s)	38, 191, 293, 368, 471, 851, 947
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	377, 685, 995, 1000
NaeI	GCCGGC	1 cut(s)	369
NdeII	GATC	4 cut(s)	341, 438, 451, 1075
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	6 cut(s)	470, 499, 557, 686, 814, 1031
NlaIV	GGNNCC	6 cut(s)	6, 459, 528, 736, 855, 988
NmeAIII	GCCGAG	2 cut(s)	176, 332
NspI	RCATGY	1 cut(s)	1031
NspV	TTCGAA	2 cut(s)	252, 302
PagI	TCATGA	2 cut(s)	553, 682
PceI	AGGCCT	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	7 cut(s)	107, 113, 254, 260, 416, 613, 1090
PkrI	GCNGC	7 cut(s)	43, 219, 373, 393, 725, 728, 1026
PleI	GAGTC	3 cut(s)	127, 188, 440
PpsI	GAGTC	3 cut(s)	127, 188, 440
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	6 cut(s)	6, 459, 528, 736, 855, 988
PspPI	GGNCC	4 cut(s)	426, 526, 735, 1042
PsuI	RGATCY	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	675, 828, 1103
SatI	GCNGC	7 cut(s)	42, 218, 372, 392, 724, 727, 1025
Sau3AI	GATC	4 cut(s)	341, 438, 451, 1075
Sau96I	GGNCC	4 cut(s)	426, 526, 735, 1042
SchI	GAGTC	3 cut(s)	128, 188, 440
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	858
SfuI	TTCGAA	2 cut(s)	252, 302
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	3 cut(s)	526, 735, 1042
Sse9I	AATT	5 cut(s)	208, 266, 769, 881, 1037
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	7 cut(s)	218, 371, 391, 491, 524, 548, 726
SspMI	CTAG	2 cut(s)	786, 938
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	205, 765
TaqI	TCGA	6 cut(s)	252, 302, 344, 386, 699, 707
TasI	AATT	5 cut(s)	208, 266, 769, 881, 1037
TauI	GCSGC	4 cut(s)	220, 374, 394, 729
TfiI	GAWTC	7 cut(s)	107, 113, 254, 260, 416, 613, 1090
Tru1I	TTAA	3 cut(s)	675, 828, 1103
Tru9I	TTAA	3 cut(s)	675, 828, 1103
TscAI	CASTG	1 cut(s)	754
TseI	GCWGC	3 cut(s)	41, 723, 1024
TspDTI	ATGAA	4 cut(s)	216, 497, 542, 656
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	754
VpaK11BI	GGWCC	3 cut(s)	526, 735, 1042
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	1 cut(s)	1031
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	786, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.