AT2G36340

Protein of unknown function, DUF573

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001485
Physical Location & Seq
Forward (+)
15235487 .. 15237904
2418 bp
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UTR
Exon/CDS
Intron
AT2G36340.1

Sequence Viewer

Length: 1245 bp
ATGGTTGGTACGAAGAGAGTTGCTGATTCCATCGACACCAACTCGGATGACACACTCACGAGGAACCGTGAGGTTGAAGTTGAGGCGATGCTCAGTAGGAGAAAGCAACTAAGGACAACAACGACGAGGACAACAACGACGAGGACAACACCATTGAGCTTGTCTTCCTCTGCTTCAAAGATGAACTGGTCTAAAAACGATGAGCTTGTCATTCTCGGGGGTATTGTGGACTATGAGAATGAAACGAAATTGAGCTATAGATCTGACTGGGATGCCTTGTACCGTTATATCAAAGATTGTGTAGAAGCAAAGTTTTCGAAGATTCAGCTCATCAATAAGGTCAAGAACATGAAGAGAAAGTTTACATACAATCAGGGGAGATCTAACCATGGGGAACAACTTTCTTTTACTAATACTGATGATGATGAAATCTTCAAATTGTCATTGATCATATGGGACAAGAATGAATCAGAGTATGTTTCTAATGAGAATATAGACCAAGCTAAGGATGTTCCTTCTGGTGAGCCAGAGACTAATGATGTGCCTTGTGAGGAGCAAGACGATAGGGATGTGCCTTGTGAGGAGCAAGAGCGAGCGAATATCGAGATTGATAATGGTGTGAGAGAGAAATTGGACCAAGCCAAGGATGTTCCTTGTGTGGAGCAAGAGAGTGAGGATGTGCCTTGTGTGGAGCAAGAGCGGGTGAGTATAGAGATTGATAATGGTGAGAAAGAGAAATTGGACCAAACCATGGATTGTGAGGAGCAAGAGAATACGGATGTGCTTTGTGAGGAGAAAGGCGATAAGGATGTACCTTGTGAGGAGCAAGAGAATAAGGATGTGCCTTGTGAGGAGCAAGAGCGGGTGAGTATCGAGATTGATAATGGTGAGGAAGAGATGAGTAGCGAAGAAGATGGTGTGGATGAGGTAGGTGTTATGGAGGACACACTTGATTCTGGGATATCGTTTCAAGGTTTAGGTAAAAATGGTGTGAAAGACAAGAGTGAAGAAGATGATGTGGTTGAGTTGGGTGTTCTCCAGGAGATATTTAAGGAGGATACATTTTTTCAAAGTTTAGGTAGATATCAACAAAAATTGCTGCTTCAGAATTTGGAAAACGTTGGAGTTGAAAGAAGAAAAGAGCTCATCAACGAATGGAAGGCATTGTTTGTTGATGAGCAGCGATTGTGTGTCAAGAAACTAACTTTCGCCGCAAAGCTTGCAAACTTAGGAGTTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

414

Amino Acids

47.34

Weight (kDa)

4.38

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 60 - 153 3.7e-25 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 751
AccBSI CCGCTC 2 cut(s) 700, 862
AciI CCGC 3 cut(s) 700, 862, 1212
AclI AACGTT 1 cut(s) 1119
AcsI RAATTY 1 cut(s) 1108
AcuI CTGAAG 1 cut(s) 1088
AfaI GTAC 3 cut(s) 10, 281, 813
AfiI CCNNNNNNNGG 3 cut(s) 505, 643, 751
AgsI TTSAA 6 cut(s) 77, 177, 436, 971, 1070, 1130
AjnI CCWGG 1 cut(s) 1038
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 7 cut(s) 159, 205, 255, 328, 503, 1144, 1219
AluI AGCT 7 cut(s) 159, 205, 255, 328, 503, 1144, 1219
Alw21I GWGCWC 1 cut(s) 1146
Alw26I GTCTC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 1099, 1180
ApoI RAATTY 1 cut(s) 1108
AspS9I GGNCC 2 cut(s) 634, 742
AsuHPI GGTGA 5 cut(s) 533, 715, 737, 877, 899
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 634, 742
BanII GRGCYC 1 cut(s) 1146
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 1146
BbvI GCAGC 2 cut(s) 1086, 1192
BccI CCATC 2 cut(s) 38, 908
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 1 cut(s) 1040
BciVI GTATCC 1 cut(s) 1051
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 256
BfuI GTATCC 1 cut(s) 1051
BglII AGATCT 2 cut(s) 260, 380
BisI GCNGC 3 cut(s) 1100, 1181, 1212
BlsI GCNGC 3 cut(s) 1101, 1182, 1213
Bme1390I CCNGG 1 cut(s) 1040
Bme18I GGWCC 2 cut(s) 634, 742
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 634, 742
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 1040
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 78, 262
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 1022
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 388, 642, 750
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 643, 751
Bse1I ACTGG 2 cut(s) 191, 272
BseBI CCWGG 1 cut(s) 1040
BseDI CCNNGG 3 cut(s) 388, 642, 750
BseLI CCNNNNNNNGG 3 cut(s) 505, 643, 751
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 191, 272
BseRI GAGGAG 6 cut(s) 566, 596, 776, 806, 836, 866
BseXI GCAGC 2 cut(s) 1086, 1192
BsiHKAI GWGCWC 1 cut(s) 1146
BsiHKCI CYCGRG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 3 cut(s) 505, 643, 751
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 1146
Bsp143I GATC 3 cut(s) 260, 380, 447
Bsp19I CCATGG 2 cut(s) 388, 750
BspACI CCGC 3 cut(s) 700, 862, 1212
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 317
BsrBI CCGCTC 2 cut(s) 700, 862
BsrI ACTGG 2 cut(s) 191, 272
BssECI CCNNGG 3 cut(s) 388, 642, 750
BssMI GATC 3 cut(s) 260, 380, 447
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 388, 642, 750
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 1040
Bst4CI ACNGT 2 cut(s) 68, 284
Bst6I CTCTTC 3 cut(s) 8, 347, 888
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 594, 1221
BstDEI CTNAG 4 cut(s) 92, 110, 504, 1228
BstDSI CCRYGG 2 cut(s) 388, 750
BstKTI GATC 3 cut(s) 263, 383, 450
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 260, 380, 447
BstMWI GCNNNNNNNGC 1 cut(s) 1220
BstNI CCWGG 1 cut(s) 1040
BstSCI CCNGG 1 cut(s) 1038
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 1086, 1192
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 260, 380
BstYI RGATCY 2 cut(s) 260, 380
BsuI GTATCC 1 cut(s) 1051
BtgI CCRYGG 2 cut(s) 388, 750
BtgZI GCGATG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 594, 1221
Cfr13I GGNCC 2 cut(s) 634, 742
Csp6I GTAC 3 cut(s) 9, 280, 812
CviAII CATG 3 cut(s) 349, 389, 751
CviJI RGCY 9 cut(s) 159, 205, 255, 328, 503, 526, 641, 1144, 1219
CviKI_1 RGCY 9 cut(s) 159, 205, 255, 328, 503, 526, 641, 1144, 1219
CviQI GTAC 3 cut(s) 9, 280, 812
DdeI CTNAG 4 cut(s) 92, 110, 504, 1228
DpnI GATC 3 cut(s) 262, 382, 449
DpnII GATC 3 cut(s) 260, 380, 447
Eam1104I CTCTTC 3 cut(s) 8, 347, 888
EarI CTCTTC 3 cut(s) 8, 347, 888
Ecl136II GAGCTC 1 cut(s) 1144
Eco130I CCWWGG 3 cut(s) 388, 642, 750
Eco24I GRGCYC 1 cut(s) 1146
Eco32I GATATC 2 cut(s) 963, 1085
Eco47I GGWCC 2 cut(s) 634, 742
Eco53kI GAGCTC 1 cut(s) 1144
Eco57I CTGAAG 1 cut(s) 1088
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 1144
EcoRII CCWGG 1 cut(s) 1038
EcoRV GATATC 2 cut(s) 963, 1085
EcoT14I CCWWGG 3 cut(s) 388, 642, 750
EcoT38I GRGCYC 1 cut(s) 1146
ErhI CCWWGG 3 cut(s) 388, 642, 750
FaeI CATG 3 cut(s) 352, 392, 754
FaqI GGGAC 1 cut(s) 470
FatI CATG 3 cut(s) 348, 388, 750
FauI CCCGC 2 cut(s) 693, 855
FauNDI CATATG 1 cut(s) 452
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 1100, 1181, 1212
FriOI GRGCYC 1 cut(s) 1146
Fsp4HI GCNGC 3 cut(s) 1100, 1181, 1212
GluI GCNGC 3 cut(s) 1100, 1181, 1212
GsuI CTGGAG 1 cut(s) 1022
Hin1II CATG 3 cut(s) 352, 392, 754
HindIII AAGCTT 1 cut(s) 1217
HinfI GANTC 4 cut(s) 26, 322, 467, 953
HphI GGTGA 5 cut(s) 533, 715, 737, 877, 899
Hpy166II GTNNAC 2 cut(s) 229, 363
Hpy188I TCNGA 4 cut(s) 46, 265, 472, 1107
Hpy188III TCNNGA 5 cut(s) 58, 343, 604, 874, 1195
Hpy8I GTNNAC 2 cut(s) 229, 363
Hpy99I CGWCG 2 cut(s) 127, 142
HpyAV CCTTC 2 cut(s) 525, 1153
HpyCH4III ACNGT 2 cut(s) 68, 284
HpyCH4IV ACGT 1 cut(s) 1119
HpyCH4V TGCA 1 cut(s) 1223
HpyF10VI GCNNNNNNNGC 1 cut(s) 1220
HpyF3I CTNAG 4 cut(s) 92, 110, 504, 1228
HpySE526I ACGT 1 cut(s) 1119
Hsp92II CATG 3 cut(s) 352, 392, 754
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 3 cut(s) 260, 380, 447
LmnI GCTCC 7 cut(s) 553, 583, 661, 691, 763, 823, 853
LpnPI CCDG 8 cut(s) 172, 253, 359, 504, 540, 942, 1025, 1052
Lsp1109I GCAGC 2 cut(s) 1086, 1192
LweI GCATC 2 cut(s) 78, 262
MaeII ACGT 1 cut(s) 1119
MalI GATC 3 cut(s) 262, 382, 449
MbiI CCGCTC 2 cut(s) 700, 862
MboI GATC 3 cut(s) 260, 380, 447
MflI RGATCY 2 cut(s) 260, 380
MhlI GDGCHC 1 cut(s) 1146
MluCI AATT 6 cut(s) 248, 437, 629, 737, 1094, 1108
MmeI TCCRAC 1 cut(s) 1102
MseI TTAA 1 cut(s) 1050
MspR9I CCNGG 1 cut(s) 1040
MvaI CCWGG 1 cut(s) 1040
MwoI GCNNNNNNNGC 1 cut(s) 1220
NcoI CCATGG 2 cut(s) 388, 750
NdeI CATATG 1 cut(s) 452
NdeII GATC 3 cut(s) 260, 380, 447
NlaIII CATG 3 cut(s) 352, 392, 754
NlaIV GGNNCC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 317
PfeI GAWTC 4 cut(s) 26, 322, 467, 953
PflMI CCANNNNNTGG 1 cut(s) 751
PfoI TCCNGGA 1 cut(s) 1038
PkrI GCNGC 3 cut(s) 1101, 1182, 1213
Psp124BI GAGCTC 1 cut(s) 1146
Psp1406I AACGTT 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 1038
PspGI CCWGG 1 cut(s) 1038
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 634, 742
PsuI RGATCY 2 cut(s) 260, 380
RsaI GTAC 3 cut(s) 10, 281, 813
RsaNI GTAC 3 cut(s) 9, 280, 812
SacI GAGCTC 1 cut(s) 1146
SaqAI TTAA 1 cut(s) 1050
SatI GCNGC 3 cut(s) 1100, 1181, 1212
Sau3AI GATC 3 cut(s) 260, 380, 447
Sau96I GGNCC 2 cut(s) 634, 742
ScrFI CCNGG 1 cut(s) 1040
SduI GDGCHC 1 cut(s) 1146
SfaNI GCATC 2 cut(s) 78, 262
SfcI CTRYAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 2 cut(s) 634, 742
Sse9I AATT 6 cut(s) 248, 437, 629, 737, 1094, 1108
SsiI CCGC 3 cut(s) 700, 862, 1212
SstI GAGCTC 1 cut(s) 1146
StyD4I CCNGG 1 cut(s) 1038
StyI CCWWGG 3 cut(s) 388, 642, 750
TaaI ACNGT 2 cut(s) 68, 284
TaiI ACGT 1 cut(s) 1122
TaqI TCGA 4 cut(s) 33, 317, 603, 873
TasI AATT 6 cut(s) 248, 437, 629, 737, 1094, 1108
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 4 cut(s) 26, 322, 467, 953
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TseI GCWGC 2 cut(s) 1099, 1180
TspDTI ATGAA 5 cut(s) 197, 255, 365, 441, 480
TspGWI ACGGA 1 cut(s) 791
Van91I CCANNNNNTGG 1 cut(s) 751
VpaK11BI GGWCC 2 cut(s) 634, 742
XapI RAATTY 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.