Rh5BG039500

Mediator-associated protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
2874063 .. 2875301
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG039500.1

Sequence Viewer

Length: 1239 bp
ATGGCACCTAAGCGCCCGTCTCCCTTGGACGAACCGCCGGCCGCTTCTTCATCGGAGGAAGAGGAAGAAGCCTCGTCCGAAGAAGAAGGATCCGGATCCGGATCCGAGGAGTCCGAATCCGATGCCGAAGCAACCGAGCCGCAAAAGACCACCTCGTCCGCGCAAGCAACTCCCGAGAAGAAGCCGCAAGCGAAGAAGCCGGAATCCGCCGCGGCAAAGCCTCAGTCTTCTTCCTCCGGCGAGACCGAAACTGAGTCTGAATCGGAATCCGACGGCGACACACTCGCCCAGCGCAGAGTCAATGTCAAGCCGATCGCGTCCAAGCCCATGGAGGAGGTGACGCCGCCGCCGAAGGCCACCAAGCCCAGATCGAAGCCCTCGGCTTCTTCTCCTCCGGCGACGACGAAATCCGGTACGAAGCGGCCGGGCGGCGAGAGCGAGTTGGTTAAGGACTCGAAGAAGGCTAAGAAGAAGGGAGATGATCCAGAGGAGGATGGTGTGGAGGAGGAATCGAAGAAATCGAAACTGTTTCAGAGGCTTTGGAGCGATGAAGATGAGATTATCATTCTGAGAGGGATGAATGAGTACAAAACCAAGAAAGGGGTGGACCCTTATGCTGACATGACTGCATTTCATGAGTTTATCAAGAAATCGCTGAAGGTGGATGTTACTAAGATCCAATTGCAAGATAAGATTCGGAGGATGAGGAAGAAGTTTGAGAACAATGTGAAGAAGAAGCACAAGCCGACTAAGGCTCATGACTCGAAGACTTTTGAGTTGTCGAAGAAGGTGTGGGGAGGTGGTGAAGGGGGTGAAGATTTAACTGGGCAGGTTACTATTGCTTCATTTGGGAAGGGGGAACAGCCCAAGTCTAATGGTAAGGCTAAGGGTAATCAGAAGAGTAACAGCAAGACTTTGGCTGCTCTGAAAGCTGAGCTGTTGGCTTCGCCGGAGCCTACAAAGGAAGATGGGAAGAGTGAAGCTTTTTTGAAACCGTGTGCATCAGATGGTGTGTTGAGTGAGGTTATTGGGTTTCGTAAGGGTTTCAAAGAGTTGGGGTTGTCGGAGACTATTGTGAAGCAGGGTATGGAATTGATTGGTGGATCAAAGCGTGCTGATTTGGAGGATAGGTGGAACAAGCTGCATGTTGCTGAATTGGAGCTTTTTGTTCAGAGGACTGAGCTCATGAGAGATCAGGCCAAGTTGATCTTGGAGGCCTTTAAGAAATCAGACCATTAG

Protein Analysis

412

Amino Acids

44.98

Weight (kDa)

7.02

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 177 - 266 2.8e-31 Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C PF22757 348 - 400 1.4e-07 Glabrous-enhancer-binding protein-like family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 3 cut(s) 161, 212, 317
AccIII TCCGGA 2 cut(s) 92, 98
AclWI GGATC 9 cut(s) 84, 90, 96, 97, 103, 109, 476, 670, 1111
AcoI YGGCCR 2 cut(s) 39, 422
AcuI CTGAAG 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 2 cut(s) 415, 587
AfiI CCNNNNNNNGG 1 cut(s) 600
AgsI TTSAA 2 cut(s) 991, 1048
AluBI AGCT 6 cut(s) 932, 937, 983, 1141, 1162, 1183
AluI AGCT 6 cut(s) 932, 937, 983, 1141, 1162, 1183
Alw21I GWGCWC 1 cut(s) 1185
Alw26I GTCTC 3 cut(s) 24, 236, 1061
AlwI GGATC 9 cut(s) 84, 90, 96, 97, 103, 109, 476, 670, 1111
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 2 cut(s) 92, 98
AoxI GGCC 5 cut(s) 39, 354, 422, 1197, 1215
ApeKI GCWGC 2 cut(s) 920, 1141
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspLEI GCGC 3 cut(s) 15, 163, 294
AspS9I GGNCC 1 cut(s) 607
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 349, 815, 824
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 607
BamHI GGATCC 3 cut(s) 89, 95, 101
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1185
BbsI GAAGAC 2 cut(s) 219, 773
Bbv12I GWGCWC 1 cut(s) 1185
BbvI GCAGC 2 cut(s) 907, 1128
BccI CCATC 3 cut(s) 488, 962, 1001
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 24, 236, 1061
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 820
BlpI GCTNAGC 1 cut(s) 933
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 6 cut(s) 6, 91, 97, 103, 609, 954
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 2 cut(s) 112, 1010
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 219, 773
Bpu10I CCTNAGC 2 cut(s) 9, 885
Bpu1102I GCTNAGC 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 426
BsaBI GATNNNNATC 2 cut(s) 94, 100
BsaHI GRCGYC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 24, 105, 210, 327, 378
BsaWI WCCGGW 3 cut(s) 92, 98, 410
BsaXI ACNNNNNCTCC 2 cut(s) 1115, 1145
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 829
Bse8I GATNNNNATC 2 cut(s) 94, 100
BseAI TCCGGA 2 cut(s) 92, 98
BseDI CCNNGG 5 cut(s) 24, 105, 210, 327, 378
BseGI GGATG 4 cut(s) 499, 582, 670, 708
BseJI GATNNNNATC 2 cut(s) 94, 100
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 5 cut(s) 236, 243, 560, 924, 1170
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 5 cut(s) 122, 347, 381, 503, 518
BseX3I CGGCCG 2 cut(s) 39, 422
BseXI GCAGC 2 cut(s) 907, 1128
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 3 cut(s) 161, 212, 317
Bsh1285I CGRYCG 3 cut(s) 42, 315, 425
BshFI GGCC 5 cut(s) 41, 356, 424, 1199, 1217
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 3 cut(s) 42, 315, 425
BsiHKAI GWGCWC 1 cut(s) 1185
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 9 cut(s) 38, 93, 99, 200, 237, 395, 411, 425, 950
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 3 cut(s) 24, 236, 1061
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 5 cut(s) 41, 356, 424, 1199, 1217
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 1185
Bsp13I TCCGGA 2 cut(s) 92, 98
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 1 cut(s) 327
BspANI GGCC 5 cut(s) 41, 356, 424, 1199, 1217
BspCNI CTCAG 5 cut(s) 235, 244, 561, 925, 1171
BspEI TCCGGA 2 cut(s) 92, 98
BspFNI CGCG 3 cut(s) 161, 212, 317
BspHI TCATGA 3 cut(s) 634, 757, 1185
BspLI GGNNCC 6 cut(s) 6, 91, 97, 103, 609, 954
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 9 cut(s) 84, 90, 96, 97, 103, 109, 476, 670, 1111
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 5 cut(s) 24, 105, 210, 327, 378
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 24, 327
Bst4CI ACNGT 2 cut(s) 528, 996
Bst6I CTCTTC 3 cut(s) 54, 893, 968
BstACI GRCGYC 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 39, 165, 189, 1113
BstDSI CCRYGG 2 cut(s) 210, 327
BstF5I GGATG 4 cut(s) 499, 582, 670, 708
BstFNI CGCG 3 cut(s) 161, 212, 317
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 3 cut(s) 15, 163, 294
BstMAI GTCTC 3 cut(s) 24, 236, 1061
BstMCI CGRYCG 3 cut(s) 42, 315, 425
BstMWI GCNNNNNNNGC 2 cut(s) 435, 929
BstNSI RCATGY 1 cut(s) 1148
BstSCI CCNGG 1 cut(s) 424
BstUI CGCG 3 cut(s) 161, 212, 317
BstV1I GCAGC 2 cut(s) 907, 1128
BstV2I GAAGAC 2 cut(s) 219, 773
BstX2I RGATCY 4 cut(s) 89, 95, 101, 675
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 4 cut(s) 89, 95, 101, 675
BstZI CGGCCG 2 cut(s) 39, 422
BsuRI GGCC 5 cut(s) 41, 356, 424, 1199, 1217
BtgI CCRYGG 2 cut(s) 210, 327
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 499, 582, 670, 708
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 4 cut(s) 39, 165, 189, 1113
CciI TCATGA 3 cut(s) 634, 757, 1185
CfoI GCGC 3 cut(s) 15, 163, 294
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 607
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 2 cut(s) 306, 349
Csp6I GTAC 2 cut(s) 414, 586
CviAII CATG 6 cut(s) 328, 622, 635, 758, 1145, 1186
CviQI GTAC 2 cut(s) 414, 586
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 2 cut(s) 39, 422
EagI CGGCCG 2 cut(s) 39, 422
Eam1104I CTCTTC 3 cut(s) 54, 893, 968
EarI CTCTTC 3 cut(s) 54, 893, 968
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 1183
EclXI CGGCCG 2 cut(s) 39, 422
Eco130I CCWWGG 2 cut(s) 24, 327
Eco147I AGGCCT 1 cut(s) 1217
Eco24I GRGCYC 1 cut(s) 1185
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 607
Eco52I CGGCCG 2 cut(s) 39, 422
Eco53kI GAGCTC 1 cut(s) 1183
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 1183
EcoT14I CCWWGG 2 cut(s) 24, 327
EcoT38I GRGCYC 1 cut(s) 1185
ErhI CCWWGG 2 cut(s) 24, 327
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 6 cut(s) 331, 625, 638, 761, 1148, 1189
FaiI YATR 8 cut(s) 329, 615, 623, 636, 759, 1088, 1146, 1187
FalI AAGNNNNNCTT 2 cut(s) 1193, 1225
FatI CATG 6 cut(s) 327, 621, 634, 757, 1144, 1185
FokI GGATG 4 cut(s) 506, 589, 677, 715
FriOI GRGCYC 1 cut(s) 1185
GlaI GCGC 3 cut(s) 14, 162, 293
GsaI CCCAGC 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 5 cut(s) 41, 356, 424, 1199, 1217
HapII CCGG 9 cut(s) 38, 93, 99, 200, 237, 395, 411, 425, 950
HgaI GACGC 2 cut(s) 306, 349
HhaI GCGC 3 cut(s) 15, 163, 294
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 6 cut(s) 331, 625, 638, 761, 1148, 1189
Hin6I GCGC 3 cut(s) 13, 161, 292
HinP1I GCGC 3 cut(s) 13, 161, 292
HindIII AAGCTT 1 cut(s) 981
HpaII CCGG 9 cut(s) 38, 93, 99, 200, 237, 395, 411, 425, 950
HphI GGTGA 3 cut(s) 349, 815, 824
Hpy166II GTNNAC 1 cut(s) 607
Hpy188III TCNNGA 8 cut(s) 93, 99, 173, 485, 635, 646, 758, 1186
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 3 cut(s) 275, 403, 406
HpyAV CCTTC 8 cut(s) 80, 346, 454, 466, 652, 781, 800, 847
HpyCH4III ACNGT 2 cut(s) 528, 996
HpyCH4V TGCA 4 cut(s) 629, 685, 1001, 1144
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 929
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 6 cut(s) 331, 625, 638, 761, 1148, 1189
HspAI GCGC 3 cut(s) 13, 161, 292
Kpn2I TCCGGA 2 cut(s) 92, 98
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
KspI CCGCGG 1 cut(s) 213
LmnI GCTCC 3 cut(s) 543, 952, 1159
Lsp1109I GCAGC 2 cut(s) 907, 1128
LweI GCATC 2 cut(s) 112, 1010
MaeIII GTNAC 4 cut(s) 337, 667, 832, 902
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 4 cut(s) 89, 95, 101, 675
MhlI GDGCHC 1 cut(s) 1185
MluCI AATT 3 cut(s) 680, 1091, 1154
MlyI GAGTC 5 cut(s) 119, 263, 306, 446, 755
MmeI TCCRAC 2 cut(s) 294, 1044
MroI TCCGGA 2 cut(s) 92, 98
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 3 cut(s) 447, 821, 1221
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 9 cut(s) 38, 93, 99, 200, 237, 395, 411, 425, 950
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 680
MvnI CGCG 3 cut(s) 161, 212, 317
MwoI GCNNNNNNNGC 2 cut(s) 435, 929
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 426
NcoI CCATGG 1 cut(s) 327
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 6 cut(s) 331, 625, 638, 761, 1148, 1189
NlaIV GGNNCC 6 cut(s) 6, 91, 97, 103, 609, 954
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 1148
PagI TCATGA 3 cut(s) 634, 757, 1185
PceI AGGCCT 1 cut(s) 1217
PcsI WCGNNNNNNNCGW 2 cut(s) 347, 518
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 6 cut(s) 116, 203, 260, 266, 509, 694
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 5 cut(s) 118, 262, 305, 446, 755
PpsI GAGTC 5 cut(s) 118, 262, 305, 446, 755
Psp124BI GAGCTC 1 cut(s) 1185
PspFI CCCAGC 1 cut(s) 288
PspN4I GGNNCC 6 cut(s) 6, 91, 97, 103, 609, 954
PspPI GGNCC 1 cut(s) 607
PsuI RGATCY 4 cut(s) 89, 95, 101, 675
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 2 cut(s) 415, 587
RsaNI GTAC 2 cut(s) 414, 586
SacI GAGCTC 1 cut(s) 1185
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 447, 821, 1221
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 5 cut(s) 119, 263, 306, 446, 755
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 1185
SfaNI GCATC 2 cut(s) 112, 1010
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SinI GGWCC 1 cut(s) 607
Sse9I AATT 3 cut(s) 680, 1091, 1154
SseBI AGGCCT 1 cut(s) 1217
SstI GAGCTC 1 cut(s) 1185
StuI AGGCCT 1 cut(s) 1217
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 24, 327
TaaI ACNGT 2 cut(s) 528, 996
TaqI TCGA 6 cut(s) 371, 455, 512, 521, 764, 782
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 680, 1091, 1154
TatI WGTACW 1 cut(s) 585
TauI GCSGC 9 cut(s) 44, 142, 187, 212, 215, 346, 349, 424, 432
TfiI GAWTC 6 cut(s) 116, 203, 260, 266, 509, 694
Tru1I TTAA 3 cut(s) 447, 821, 1221
Tru9I TTAA 3 cut(s) 447, 821, 1221
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 920, 1141
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 39, 564, 593, 623, 834
VpaK11BI GGWCC 1 cut(s) 607
XceI RCATGY 1 cut(s) 1148
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.