Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

20759164 .. 20760620

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG160000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCACCTAAGCGCCCGTCTCCCTTGGACGAACCGCCGGCCGCTTCTTCATCGGAGGAAGAGGAAGAAGCCTCGTCAGAAGAAGAAGGATCCGGATCCGGATCCGAGGAGTCCGAATCCGATGCCGAAGCAACCGAGCCGCAAAAGACCACCTCGACCGCGCAAGCAACTTCCGAGAAGAAGCCGCAAGCGAAGAAGCCGGAATCTGCCGCCGCAAAGCCTCAGTCTTCTTCCTCCGGCGAGACCGAAACCGAGTCTGAATCGGAATCCGACGGCGACACACTCGCCCAGCGCAGAGTCAATCTCAAGCCGATCGCGTCCAAGCCCATGGAGGAGGTGATGCCGCCGCCGAAGGCCACCAAGCCCAGATCGAAGCCCTCGGCTTCTTCTCCTCCGGCGACGGCGAAATCCGGCACGAAGCGTCCTGGCGGCGAGAGCGAGTTGGTTAAGGACTCGAAGAAGGCTAAGAAGAAGGGAGATGATCCAGAGGAGGATGGTGTGGAAGTGGAATCGAAGAAATCGAAACTGTTTCAGAGGCTTTGGAGCGATGAAGATGAGATTATCATTCTGAAAGGGATGAATGAGTACAAAACGAAGAAGGGGGTGGACCCTTATGCTGATATGACTGCATTTCATGAGTTTATCAAGAAATCGTTGAAGGTGGATGTTACTAAGATCCAATTGCAAGATAAGATTCGGAGGATGAGGAAGAAGTTTGAGAACAATGTGAAGAAGAAGCACAAGCCGACTAAGGCTCATGACTCGAAGACTTTCGAGTTGTCGAAGAAGGTGTGGGGAGGTGGTGAAGGGGGTGAAGATTTAACTGGGCAGGCTACTATTGCTTCATTTGGGAAGGGGGAACAGCCCAAGTCTAATGGGAAGGCTAAGGGTAATCAGAAGAGTAACAGCAAGACTTTGGCTGCTCTGAAAGTTGAGCTGTTGGCGTCGCCGGAGACTACAAAGGAAGATGGGAAGAGTGAAGCTGAAAAGCCGTGTGCATCAGATAGTGTGTTGAGTGAGGTTATTGGGTTTCATAAGGGTTTCAAAGAGTTGGGGTTGTCGGAGACTATTGTGAAGCAGGGTATGGAATTGATTGGTGGATCAAAGCGTGCTGATTTGGAGGATAGGTGGAACAAGCTGCATGTTACTGAATTGGAGCTTTTTGTTCAGAGGACTGAGCTCATGAGAGATCAGGGCAAGTTGATCTTGGAGGCCTTCAAGAAATCAGACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

411

Amino Acids

44.84

Weight (kDa)

6.68

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	177 - 266	2.7e-31	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	347 - 397	1.7e-07	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	2 cut(s)	161, 317
AccIII	TCCGGA	2 cut(s)	92, 98
AclWI	GGATC	9 cut(s)	84, 90, 96, 97, 103, 109, 476, 670, 1108
AcoI	YGGCCR	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	944
AfaI	GTAC	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	658, 1045, 1219
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	5 cut(s)	937, 983, 1138, 1159, 1180
AluI	AGCT	5 cut(s)	937, 983, 1138, 1159, 1180
Alw21I	GWGCWC	1 cut(s)	1182
Alw26I	GTCTC	4 cut(s)	24, 236, 947, 1058
AlwI	GGATC	9 cut(s)	84, 90, 96, 97, 103, 109, 476, 670, 1108
Aor13HI	TCCGGA	2 cut(s)	92, 98
AoxI	GGCC	3 cut(s)	39, 354, 1212
ApeKI	GCWGC	2 cut(s)	920, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	3 cut(s)	15, 163, 294
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	3 cut(s)	349, 815, 824
AvaII	GGWCC	1 cut(s)	607
BamHI	GGATCC	3 cut(s)	89, 95, 101
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	1182
BbsI	GAAGAC	2 cut(s)	219, 773
Bbv12I	GWGCWC	1 cut(s)	1182
BbvI	GCAGC	2 cut(s)	907, 1125
BccI	CCATC	2 cut(s)	488, 962
BceAI	ACGGC	3 cut(s)	289, 417, 976
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	4 cut(s)	24, 236, 947, 1058
BfoI	RGCGCY	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	5 cut(s)	6, 91, 97, 103, 609
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	3 cut(s)	112, 330, 1007
BmuI	ACTGGG	1 cut(s)	834
BpiI	GAAGAC	2 cut(s)	219, 773
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	2 cut(s)	9, 885
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	2 cut(s)	94, 100
BsaHI	GRCGYC	1 cut(s)	944
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	24, 105, 327, 378
BsaWI	WCCGGW	2 cut(s)	92, 98
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	829
Bse8I	GATNNNNATC	2 cut(s)	94, 100
BseAI	TCCGGA	2 cut(s)	92, 98
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	24, 105, 327, 378
BseGI	GGATG	4 cut(s)	499, 582, 670, 708
BseJI	GATNNNNATC	2 cut(s)	94, 100
BseMII	CTCAG	2 cut(s)	236, 1167
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	4 cut(s)	122, 347, 381, 503
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	907, 1125
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	2 cut(s)	161, 317
Bsh1285I	CGRYCG	3 cut(s)	42, 159, 315
BshFI	GGCC	3 cut(s)	41, 356, 1214
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	3 cut(s)	42, 159, 315
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiSI	CCGG	8 cut(s)	38, 93, 99, 200, 237, 395, 411, 950
BsmAI	GTCTC	4 cut(s)	24, 236, 947, 1058
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	41, 356, 1214
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	1182
Bsp13I	TCCGGA	2 cut(s)	92, 98
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	3 cut(s)	41, 356, 1214
BspCNI	CTCAG	2 cut(s)	235, 1168
BspEI	TCCGGA	2 cut(s)	92, 98
BspFNI	CGCG	2 cut(s)	161, 317
BspHI	TCATGA	3 cut(s)	634, 757, 1182
BspLI	GGNNCC	5 cut(s)	6, 91, 97, 103, 609
BspPI	GGATC	9 cut(s)	84, 90, 96, 97, 103, 109, 476, 670, 1108
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	24, 105, 327, 378
BssNI	GRCGYC	1 cut(s)	944
BssT1I	CCWWGG	2 cut(s)	24, 327
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	3 cut(s)	54, 893, 968
BstACI	GRCGYC	1 cut(s)	944
BstC8I	GCNNGC	5 cut(s)	39, 165, 189, 831, 1110
BstDEI	CTNAG	7 cut(s)	9, 222, 465, 672, 750, 885, 1176
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	499, 582, 670, 708
BstFNI	CGCG	2 cut(s)	161, 317
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	3 cut(s)	15, 163, 294
BstMAI	GTCTC	4 cut(s)	24, 236, 947, 1058
BstMCI	CGRYCG	3 cut(s)	42, 159, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 839
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	1145
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	2 cut(s)	161, 317
BstV1I	GCAGC	2 cut(s)	907, 1125
BstV2I	GAAGAC	2 cut(s)	219, 773
BstX2I	RGATCY	4 cut(s)	89, 95, 101, 675
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	4 cut(s)	89, 95, 101, 675
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	41, 356, 1214
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	499, 582, 670, 708
Cac8I	GCNNGC	5 cut(s)	39, 165, 189, 831, 1110
CciI	TCATGA	3 cut(s)	634, 757, 1182
CfoI	GCGC	3 cut(s)	15, 163, 294
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	607
CseI	GACGC	3 cut(s)	306, 410, 933
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	5 cut(s)	328, 635, 758, 1142, 1183
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	7 cut(s)	9, 222, 465, 672, 750, 885, 1176
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	54, 893, 968
EarI	CTCTTC	3 cut(s)	54, 893, 968
Ecl136II	GAGCTC	1 cut(s)	1180
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	24, 327
Eco147I	AGGCCT	1 cut(s)	1214
Eco24I	GRGCYC	1 cut(s)	1182
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	607
Eco52I	CGGCCG	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	1180
EcoICRI	GAGCTC	1 cut(s)	1180
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	24, 327
EcoT38I	GRGCYC	1 cut(s)	1182
ErhI	CCWWGG	2 cut(s)	24, 327
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	5 cut(s)	331, 638, 761, 1145, 1186
FaiI	YATR	9 cut(s)	329, 615, 623, 636, 759, 1035, 1085, 1143, 1184
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FatI	CATG	5 cut(s)	327, 634, 757, 1141, 1182
FokI	GGATG	4 cut(s)	506, 589, 677, 715
FriOI	GRGCYC	1 cut(s)	1182
GlaI	GCGC	3 cut(s)	14, 162, 293
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	41, 356, 1214
HapII	CCGG	8 cut(s)	38, 93, 99, 200, 237, 395, 411, 950
HgaI	GACGC	3 cut(s)	306, 410, 933
HhaI	GCGC	3 cut(s)	15, 163, 294
Hin1I	GRCGYC	1 cut(s)	944
Hin1II	CATG	5 cut(s)	331, 638, 761, 1145, 1186
Hin6I	GCGC	3 cut(s)	13, 161, 292
HinP1I	GCGC	3 cut(s)	13, 161, 292
HpaII	CCGG	8 cut(s)	38, 93, 99, 200, 237, 395, 411, 950
HphI	GGTGA	3 cut(s)	349, 815, 824
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188III	TCNNGA	8 cut(s)	93, 99, 485, 635, 646, 758, 1183, 1219
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	3 cut(s)	275, 403, 949
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	4 cut(s)	629, 685, 998, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 839
HpyF3I	CTNAG	7 cut(s)	9, 222, 465, 672, 750, 885, 1176
Hsp92I	GRCGYC	1 cut(s)	944
Hsp92II	CATG	5 cut(s)	331, 638, 761, 1145, 1186
HspAI	GCGC	3 cut(s)	13, 161, 292
Kpn2I	TCCGGA	2 cut(s)	92, 98
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	543, 1156
Lsp1109I	GCAGC	2 cut(s)	907, 1125
LweI	GCATC	3 cut(s)	112, 330, 1007
MaeIII	GTNAC	3 cut(s)	667, 902, 1144
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	4 cut(s)	89, 95, 101, 675
MhlI	GDGCHC	1 cut(s)	1182
MluCI	AATT	3 cut(s)	680, 1088, 1151
MlyI	GAGTC	5 cut(s)	119, 263, 306, 446, 755
MmeI	TCCRAC	2 cut(s)	294, 1041
MroI	TCCGGA	2 cut(s)	92, 98
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	2 cut(s)	447, 821
MspI	CCGG	8 cut(s)	38, 93, 99, 200, 237, 395, 411, 950
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	2 cut(s)	161, 317
MwoI	GCNNNNNNNGC	2 cut(s)	435, 839
NaeI	GCCGGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	327
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	5 cut(s)	331, 638, 761, 1145, 1186
NlaIV	GGNNCC	5 cut(s)	6, 91, 97, 103, 609
NmeAIII	GCCGAG	1 cut(s)	359
NspI	RCATGY	1 cut(s)	1145
PagI	TCATGA	3 cut(s)	634, 757, 1182
PceI	AGGCCT	1 cut(s)	1214
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	6 cut(s)	116, 203, 260, 266, 509, 694
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	5 cut(s)	118, 262, 305, 446, 755
PpsI	GAGTC	5 cut(s)	118, 262, 305, 446, 755
Psp124BI	GAGCTC	1 cut(s)	1182
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	5 cut(s)	6, 91, 97, 103, 609
PspPI	GGNCC	1 cut(s)	607
PsuI	RGATCY	4 cut(s)	89, 95, 101, 675
PvuI	CGATCG	1 cut(s)	315
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SacI	GAGCTC	1 cut(s)	1182
SaqAI	TTAA	2 cut(s)	447, 821
Sau96I	GGNCC	1 cut(s)	607
SchI	GAGTC	5 cut(s)	119, 263, 306, 446, 755
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	1182
SfaNI	GCATC	3 cut(s)	112, 330, 1007
SinI	GGWCC	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	680, 1088, 1151
SseBI	AGGCCT	1 cut(s)	1214
SstI	GAGCTC	1 cut(s)	1182
StuI	AGGCCT	1 cut(s)	1214
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	2 cut(s)	24, 327
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	8 cut(s)	155, 371, 455, 512, 521, 764, 774, 782
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	680, 1088, 1151
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	8 cut(s)	44, 142, 187, 212, 215, 346, 349, 432
TfiI	GAWTC	6 cut(s)	116, 203, 260, 266, 509, 694
Tru1I	TTAA	2 cut(s)	447, 821
Tru9I	TTAA	2 cut(s)	447, 821
TseI	GCWGC	2 cut(s)	920, 1138
TspDTI	ATGAA	6 cut(s)	39, 564, 593, 623, 834, 1022
VpaK11BI	GGWCC	1 cut(s)	607
XceI	RCATGY	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.