Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

15268512 .. 15269528

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCACCTAAGCGCCCCTCCAATGCAATGAACAATCCCCCGTCGTCGTCGGAGGAGGACGAGGAACCGTCGTCGTCGGAATATGAAACAGCCTCTGAATCCGACTCCGAAATTGAGTCCGAGTCTGACTCCGGCTCCGACGGGGAGACAGGAGTGGCCAGTGCCAAGCCTATTGCTTCCAAGCACGTGGAGAAGGTTACGCCGCCGCCCAAGGCCACCAAGCCCCCCGCTAGTCAGGCGGCAGCGAAACCCGGTACCAAGCGGCCCGGTGGCGAGAGTGAGTTGATTAAGGACTCCAAGAAGGCTAAGAAGAAGAAGGGAAATGATGAAGAGGACTTGAAGAAGGCCAAGAAGAAGAAGGGAAATGATGAAGAGGACTTGAAGAAGGCCAAGAAGAAGGGGATTGATAAAGAGGACGATGGTGTAAAAGAGGAGTTGGAGAAACCCAAACAGCTGTTCCAGAGGGTTTGGAGCGAGGAAGATGAGATCGTTTTGCTTAAAGGCATGAATGAGTACACTATGGAGAAAAGGTTGGACCCTATTGCAGATGTGAATGCATTTCTTAACTTCATCAAAGACAAGTTGAAGTTGAATGTTAGCAAGAGCCAGTTACAGGACAAGATTCGCAGAATGAAGAAGAAGTTTGAGAACATTGTGAACAACAAGTACAAACCGACCAATCCTCATGAATGGGCGGCTTTCGAGTTGTCAAAGAATGTGTGGGGAGATGGTGAAGATCTAGCTGGGAAGGTGGAACAGCTCAAGTCTAATGGAAACTTCCAGAATATGTTGAGGGAGGTTCTTGGGTTTGATAACGGTTTCAAAGAGCTTCGGTTGTCGGAAGCTATTGTGAACCAAGGTCTGGAGTGGATTGAGGAATCAAACTGTGCTGAACTGCTAAAGGATAGGTGGAACAAGCTGCATGTTGCTGAATTGGAGCATTTTGTTATGAAGGCTGAGCTTATGAGAGATCAGGCCAAGTTGATATTGGAGGCCCTGAAGTCATCAAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

339

Amino Acids

38.06

Weight (kDa)

5.96

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	153 - 242	1.7e-27	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	4, 254
AccB7I	CCANNNNNTGG	1 cut(s)	862
AciI	CCGC	6 cut(s)	203, 206, 228, 239, 262, 695
AcoI	YGGCCR	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	256, 515, 668
AfiI	CCNNNNNNNGG	2 cut(s)	613, 862
AgsI	TTSAA	5 cut(s)	340, 382, 586, 592, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	7 cut(s)	454, 743, 760, 829, 845, 919, 961
AluI	AGCT	7 cut(s)	454, 743, 760, 829, 845, 919, 961
Alw26I	GTCTC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	7 cut(s)	156, 213, 263, 345, 387, 975, 993
ApeKI	GCWGC	2 cut(s)	242, 919
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	264, 535, 994
AsuC2I	CCSGG	2 cut(s)	252, 267
AsuHPI	GGTGA	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	4, 254
BbrPI	CACGTG	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	254, 906
BccI	CCATC	2 cut(s)	413, 722
BcnI	CCSGG	2 cut(s)	252, 267
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	231, 740
BfoI	RGCGCY	1 cut(s)	16
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	7 cut(s)	203, 206, 240, 243, 263, 696, 920
BlpI	GCTNAGC	1 cut(s)	957
BlsI	GCNGC	7 cut(s)	204, 207, 241, 244, 264, 697, 921
Bme1390I	CCNGG	2 cut(s)	252, 267
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	3 cut(s)	264, 535, 994
BmiI	GGNNCC	5 cut(s)	6, 66, 136, 256, 537
BmrFI	CCNGG	2 cut(s)	252, 267
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	884
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	252, 267
BsaAI	YACGTR	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	210, 856
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 862
Bse1I	ACTGG	2 cut(s)	159, 607
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	210, 856
BseLI	CCNNNNNNNGG	2 cut(s)	613, 862
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	2 cut(s)	159, 607
BseRI	GAGGAG	2 cut(s)	68, 446
BseXI	GCAGC	2 cut(s)	254, 906
BseYI	CCCAGC	1 cut(s)	743
BshFI	GGCC	7 cut(s)	158, 215, 265, 347, 389, 977, 995
BshNI	GGYRCC	2 cut(s)	4, 254
BsiSI	CCGG	3 cut(s)	132, 252, 267
BslI	CCNNNNNNNGG	2 cut(s)	613, 862
BsmAI	GTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	7 cut(s)	158, 215, 265, 347, 389, 977, 995
Bsp143I	GATC	3 cut(s)	486, 736, 970
Bsp1720I	GCTNAGC	1 cut(s)	957
BspACI	CCGC	6 cut(s)	203, 206, 228, 239, 262, 695
BspANI	GGCC	7 cut(s)	158, 215, 265, 347, 389, 977, 995
BspCNI	CTCAG	1 cut(s)	949
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	5 cut(s)	6, 66, 136, 256, 537
BspT107I	GGYRCC	2 cut(s)	4, 254
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	159, 607
BssECI	CCNNGG	2 cut(s)	210, 856
BssMI	GATC	3 cut(s)	486, 736, 970
BssT1I	CCWWGG	2 cut(s)	210, 856
Bst4CI	ACNGT	3 cut(s)	69, 818, 887
Bst6I	CTCTTC	2 cut(s)	324, 366
BstBAI	YACGTR	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	9, 306, 957
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	489, 739, 973
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	486, 736, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	2 cut(s)	250, 265
BstV1I	GCAGC	2 cut(s)	254, 906
BstX2I	RGATCY	1 cut(s)	736
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	7 cut(s)	158, 215, 265, 347, 389, 977, 995
BtsIMutI	CAGTG	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	264, 535, 994
Csp6I	GTAC	3 cut(s)	255, 514, 667
CviAII	CATG	3 cut(s)	505, 686, 923
CviQI	GTAC	3 cut(s)	255, 514, 667
DdeI	CTNAG	3 cut(s)	9, 306, 957
DpnI	GATC	3 cut(s)	488, 738, 972
DpnII	GATC	3 cut(s)	486, 736, 970
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	324, 366
EarI	CTCTTC	2 cut(s)	324, 366
Eco130I	CCWWGG	2 cut(s)	210, 856
Eco47I	GGWCC	1 cut(s)	535
Eco72I	CACGTG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	994
EcoT14I	CCWWGG	2 cut(s)	210, 856
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	2 cut(s)	210, 856
FaeI	CATG	3 cut(s)	508, 689, 926
FaiI	YATR	8 cut(s)	84, 506, 521, 687, 788, 924, 950, 965
FatI	CATG	3 cut(s)	504, 685, 922
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	203, 206, 240, 243, 263, 696, 920
Fsp4HI	GCNGC	7 cut(s)	203, 206, 240, 243, 263, 696, 920
FspBI	CTAG	2 cut(s)	231, 740
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	7 cut(s)	203, 206, 240, 243, 263, 696, 920
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	884
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	7 cut(s)	158, 215, 265, 347, 389, 977, 995
HapII	CCGG	3 cut(s)	132, 252, 267
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	508, 689, 926
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	8 cut(s)	98, 104, 116, 122, 128, 293, 622, 878
HpaII	CCGG	3 cut(s)	132, 252, 267
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	3 cut(s)	516, 658, 853
Hpy188I	TCNGA	9 cut(s)	52, 79, 97, 103, 109, 121, 127, 139, 841
Hpy188III	TCNNGA	4 cut(s)	460, 686, 781, 863
Hpy8I	GTNNAC	3 cut(s)	516, 658, 853
Hpy99I	CGWCG	7 cut(s)	46, 49, 52, 73, 76, 79, 143
HpyAV	CCTTC	9 cut(s)	187, 295, 310, 337, 352, 379, 391, 742, 946
HpyCH4III	ACNGT	3 cut(s)	69, 818, 887
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	26, 545, 557, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	9, 306, 957
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	508, 689, 926
HspAI	GCGC	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	486, 736, 970
LmnI	GCTCC	3 cut(s)	140, 471, 937
Lsp1109I	GCAGC	2 cut(s)	254, 906
MaeI	CTAG	2 cut(s)	231, 740
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	196, 609
MalI	GATC	3 cut(s)	488, 738, 972
MboI	GATC	3 cut(s)	486, 736, 970
MflI	RGATCY	1 cut(s)	736
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	111, 932
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	5 cut(s)	98, 122, 125, 131, 287
MmeI	TCCRAC	7 cut(s)	30, 57, 126, 162, 417, 513, 819
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	288, 498, 564
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	3 cut(s)	132, 252, 267
MspR9I	CCNGG	2 cut(s)	252, 267
Mva1269I	GAATGC	1 cut(s)	559
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	252, 267
NdeII	GATC	3 cut(s)	486, 736, 970
NlaIII	CATG	3 cut(s)	508, 689, 926
NlaIV	GGNNCC	5 cut(s)	6, 66, 136, 256, 537
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	926
PagI	TCATGA	1 cut(s)	685
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	3 cut(s)	98, 622, 878
PflMI	CCANNNNNTGG	1 cut(s)	862
PkrI	GCNGC	7 cut(s)	204, 207, 241, 244, 264, 697, 921
PleI	GAGTC	5 cut(s)	98, 122, 124, 130, 287
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	5 cut(s)	98, 122, 124, 130, 287
Ppu21I	YACGTR	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	743
PspN4I	GGNNCC	5 cut(s)	6, 66, 136, 256, 537
PspPI	GGNCC	3 cut(s)	264, 535, 994
PsrI	GAACNNNNNNTAC	2 cut(s)	650, 682
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	3 cut(s)	256, 515, 668
RsaNI	GTAC	3 cut(s)	255, 514, 667
SaqAI	TTAA	3 cut(s)	288, 498, 564
SatI	GCNGC	7 cut(s)	203, 206, 240, 243, 263, 696, 920
Sau3AI	GATC	3 cut(s)	486, 736, 970
Sau96I	GGNCC	3 cut(s)	264, 535, 994
SchI	GAGTC	5 cut(s)	98, 122, 125, 131, 287
ScrFI	CCNGG	2 cut(s)	252, 267
SinI	GGWCC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	2 cut(s)	111, 932
SsiI	CCGC	6 cut(s)	203, 206, 228, 239, 262, 695
SspMI	CTAG	2 cut(s)	231, 740
StyD4I	CCNGG	2 cut(s)	250, 265
StyI	CCWWGG	2 cut(s)	210, 856
TaaI	ACNGT	3 cut(s)	69, 818, 887
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	702
TasI	AATT	2 cut(s)	111, 932
TatI	WGTACW	2 cut(s)	513, 666
TauI	GCSGC	5 cut(s)	205, 208, 242, 265, 698
TfiI	GAWTC	3 cut(s)	98, 622, 878
Tru1I	TTAA	3 cut(s)	288, 498, 564
Tru9I	TTAA	3 cut(s)	288, 498, 564
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	242, 919
TspDTI	ATGAA	9 cut(s)	44, 99, 342, 384, 521, 559, 647, 702, 965
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	535
XceI	RCATGY	1 cut(s)	926
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XspI	CTAG	2 cut(s)	231, 740
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.