AT2G20805

Protein of unknown function, DUF573

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
8956169 .. 8956737
569 bp
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UTR
Exon/CDS
Intron
AT2G20805.1

Sequence Viewer

Length: 399 bp
ATGTCTTTAATTAAGGTTCAATTTATGAAAATGCTTGCGAGTTTAAAGAGAAAGTATGAGAACAATCTTGTGAAAGCCAAGAATGGTGATGAACATATCAGACTTCATGATCTCAGGGCTTTTCAATTGTCTAAGTTTGTTTGGGGAGATATTGAAGAATCACCTGTGAAATCGAAGAAAGTTATGTCTATGAACCTTGAGCTTGGTAAAAACAAAGATACTTTTCCCAATTCTTCTCTTGTTAGATCACTAGAGCGTTTTGGTGTTGATGAACTTACTCCTCAACAAGGATTGAGTAGCCTTGACTTAGAGGATAAGAAGATATTCGAGGAGCAGTTGGAAAGCTTTGCAGGTTATAGAATTCGAGTTCTATTCGCGAAAAAGTGGTTTTCTTCATGA
Functional Annotation

Protein Analysis

132

Amino Acids

15.36

Weight (kDa)

9.45

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 5 - 49 1.3e-06 Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C PF22757 73 - 126 8.1e-10 Glabrous-enhancer-binding protein-like family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AccII CGCG 1 cut(s) 377
AcsI RAATTY 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 20, 125, 155
AluBI AGCT 2 cut(s) 202, 345
AluI AGCT 2 cut(s) 202, 345
ApoI RAATTY 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 98, 153
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 270, 344
Bsh1236I CGCG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 287
Bsp143I GATC 2 cut(s) 109, 245
Bsp68I TCGCGA 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 377
BspHI TCATGA 2 cut(s) 106, 395
BspMI ACCTGC 1 cut(s) 341
BssMI GATC 2 cut(s) 109, 245
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 113, 132, 307
BstENI CCTNNNNNAGG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 377
BstKTI GATC 2 cut(s) 112, 248
BstMBI GATC 2 cut(s) 109, 245
BstUI CGCG 1 cut(s) 377
BtuMI TCGCGA 1 cut(s) 377
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 2 cut(s) 106, 395
CviAII CATG 2 cut(s) 107, 396
CviJI RGCY 5 cut(s) 77, 119, 202, 300, 345
CviKI_1 RGCY 5 cut(s) 77, 119, 202, 300, 345
DdeI CTNAG 3 cut(s) 113, 132, 307
DpnI GATC 2 cut(s) 111, 247
DpnII GATC 2 cut(s) 109, 245
DraI TTTAAA 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 360
FaeI CATG 2 cut(s) 110, 399
FaiI YATR 8 cut(s) 26, 57, 96, 108, 185, 191, 357, 397
FatI CATG 2 cut(s) 106, 395
FspBI CTAG 1 cut(s) 251
Hin1II CATG 2 cut(s) 110, 399
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 1 cut(s) 158
HphI GGTGA 2 cut(s) 98, 153
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 3 cut(s) 107, 376, 396
HpyCH4V TGCA 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 113, 132, 307
Hsp92II CATG 2 cut(s) 110, 399
Kzo9I GATC 2 cut(s) 109, 245
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 3 cut(s) 100, 177, 336
MaeI CTAG 1 cut(s) 251
MalI GATC 2 cut(s) 111, 247
MboI GATC 2 cut(s) 109, 245
MboII GAAGA 5 cut(s) 167, 187, 225, 331, 384
MfeI CAATTG 1 cut(s) 125
MluCI AATT 5 cut(s) 9, 20, 125, 229, 360
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 291, 304, 322
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 3 cut(s) 8, 12, 44
MunI CAATTG 1 cut(s) 125
MvnI CGCG 1 cut(s) 377
NdeII GATC 2 cut(s) 109, 245
NlaIII CATG 2 cut(s) 110, 399
NruI TCGCGA 1 cut(s) 377
PacI TTAATTAA 1 cut(s) 12
PagI TCATGA 2 cut(s) 106, 395
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 158
RruI TCGCGA 1 cut(s) 377
SaqAI TTAA 3 cut(s) 8, 12, 44
Sau3AI GATC 2 cut(s) 109, 245
SetI ASST 6 cut(s) 18, 166, 198, 204, 347, 355
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 9, 20, 125, 229, 360
SspMI CTAG 1 cut(s) 251
TaqI TCGA 3 cut(s) 173, 327, 364
TasI AATT 5 cut(s) 9, 20, 125, 229, 360
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 8, 12, 44
Tru9I TTAA 3 cut(s) 8, 12, 44
TspDTI ATGAA 6 cut(s) 41, 95, 105, 206, 285, 384
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.