Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

168631 .. 169642

Gene Structure 1012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAGGAATAACAAAAAAACTTTTGGTCTCCCGCTCTCTCAAACGTCTGACGGCCAAGAAAAACCGGAGGAAGATTCATCGAGAGACGAACAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTCAAGACTCTGATTCAGATTCGCTGGAGAAGGAGGTTTCAGTTGTTGTAACCAAGACGAGTGATGATGAGATGGTGTCAACAGATACCAAAAAGAATTATTTTCAAAGAATATGGAGTGATGATGATGAGATTGTTTTGCTGCAAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTTTTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCAACATCAATTCACAACCAAAATCCGTCGCTTGAAGGACAAGTTCCTCAAGAAATGGAACAATGGTGTAGATGAGAACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAACCTACAACTAAGGTGGAGGAGGTAGGAGATTGGTTTGTAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAGTGAAGACGTAATGAAACAGAGTTGGAGCATGGTTCCGATAGAGACGAAGAAGGAGGTCGAAGAGAAGTTCAAGCTGTTGAAAGATGAAGAATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTCAACTCTATGATCATTGAAGCAACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

252

Amino Acids

29.44

Weight (kDa)

9.03

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	80 - 172	2.1e-32	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	182 - 248	2.9e-25	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	110, 580
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	556
AcyI	GRCGYC	1 cut(s)	136
AgsI	TTSAA	7 cut(s)	242, 374, 415, 494, 667, 676, 746
AluBI	AGCT	2 cut(s)	369, 670
AluI	AGCT	2 cut(s)	369, 670
Alw26I	GTCTC	4 cut(s)	34, 80, 104, 632
AlwI	GGATC	2 cut(s)	110, 580
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
Asp700I	GAANNNNTTC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	139, 364, 604
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	3 cut(s)	118, 127, 202
BceAI	ACGGC	2 cut(s)	69, 716
BclI	TGATCA	1 cut(s)	738
BcoDI	GTCTC	4 cut(s)	34, 80, 104, 632
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	516, 630
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	34
BsaWI	WCCGGW	3 cut(s)	66, 106, 480
Bse1I	ACTGG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	67, 107, 481
BsmAI	GTCTC	4 cut(s)	34, 80, 104, 632
BsmBI	CGTCTC	3 cut(s)	80, 104, 632
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	115, 572, 738
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	516, 630
BspPI	GGATC	2 cut(s)	110, 580
BspTNI	GGTCTC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	115, 572, 738
BssNI	GRCGYC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	3 cut(s)	125, 308, 651
BstACI	GRCGYC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	525
BstKTI	GATC	3 cut(s)	118, 575, 741
BstMAI	GTCTC	4 cut(s)	34, 80, 104, 632
BstMBI	GATC	3 cut(s)	115, 572, 738
BstMCI	CGRYCG	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	2 cut(s)	86, 125
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	2 cut(s)	286, 625
CviJI	RGCY	4 cut(s)	56, 369, 670, 703
CviKI_1	RGCY	4 cut(s)	56, 369, 670, 703
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	3 cut(s)	117, 574, 740
DpnII	GATC	3 cut(s)	115, 572, 738
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	125, 308, 651
EarI	CTCTTC	3 cut(s)	125, 308, 651
Eco31I	GGTCTC	1 cut(s)	34
Esp3I	CGTCTC	3 cut(s)	80, 104, 632
FaeI	CATG	2 cut(s)	289, 628
FaiI	YATR	6 cut(s)	250, 287, 324, 332, 626, 737
FatI	CATG	2 cut(s)	285, 624
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	738
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	67, 107, 481
HgaI	GACGC	2 cut(s)	86, 125
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	289, 628
HincII	GTYRAC	2 cut(s)	216, 730
HindII	GTYRAC	2 cut(s)	216, 730
HinfI	GANTC	7 cut(s)	76, 143, 149, 155, 316, 379, 686
HpaII	CCGG	3 cut(s)	67, 107, 481
HphI	GGTGA	3 cut(s)	139, 364, 604
Hpy166II	GTNNAC	2 cut(s)	216, 730
Hpy188I	TCNGA	5 cut(s)	51, 148, 154, 633, 691
Hpy188III	TCNNGA	4 cut(s)	83, 140, 430, 476
Hpy8I	GTNNAC	2 cut(s)	216, 730
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	3 cut(s)	160, 409, 640
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	46, 603
HpyCH4V	TGCA	2 cut(s)	280, 721
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	46, 603
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	289, 628
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	3 cut(s)	115, 572, 738
LmnI	GCTCC	1 cut(s)	621
LpnPI	CCDG	5 cut(s)	80, 120, 146, 321, 494
Lsp1109I	GCAGC	1 cut(s)	264
MaeII	ACGT	2 cut(s)	46, 603
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	117, 574, 740
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	3 cut(s)	115, 572, 738
MboII	GAAGA	9 cut(s)	85, 125, 142, 325, 367, 611, 655, 668, 695
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	6 cut(s)	232, 389, 507, 556, 576, 754
MlyI	GAGTC	2 cut(s)	137, 325
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	9 cut(s)	63, 103, 126, 163, 437, 526, 529, 576, 643
MroXI	GAANNNNTTC	1 cut(s)	359
MspI	CCGG	3 cut(s)	67, 107, 481
MunI	CAATTG	1 cut(s)	576
NdeII	GATC	3 cut(s)	115, 572, 738
NlaIII	CATG	2 cut(s)	289, 628
NlaIV	GGNNCC	2 cut(s)	516, 630
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	5 cut(s)	76, 149, 155, 379, 686
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	2 cut(s)	137, 324
PpsI	GAGTC	2 cut(s)	137, 324
PspN4I	GGNNCC	2 cut(s)	516, 630
PsuI	RGATCY	1 cut(s)	115
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	115, 572, 738
SchI	GAGTC	2 cut(s)	137, 325
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	6 cut(s)	232, 389, 507, 556, 576, 754
SsiI	CCGC	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	49, 606
TaqI	TCGA	3 cut(s)	82, 122, 654
TasI	AATT	6 cut(s)	232, 389, 507, 556, 576, 754
TfiI	GAWTC	5 cut(s)	76, 149, 155, 379, 686
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	5 cut(s)	17, 68, 352, 623, 696
TspGWI	ACGGA	1 cut(s)	395
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.