Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

21004402 .. 21019795

Gene Structure 15394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGACCTTTCCAGGGGTGGACCCTTATGTAGATATGAATGGATTGCATGCCTTCATCAAGAAATCACTAAATGTGAATGTTATTAAGAAACAATTGCAAGATAAGATTCAAAAGATGAGGAGGAAGTTTGAGAAGAATATGAAGAATGAGAAGTACAATCGACTAAGGCTCATAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

59

Amino Acids

7.11

Weight (kDa)

10.29

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	5 - 50	6.6e-11	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	1 cut(s)	169
CviKI_1	RGCY	1 cut(s)	169
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	27, 35, 48, 140, 173
FatI	CATG	1 cut(s)	46
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	46, 97
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	50
LpnPI	CCDG	1 cut(s)	24
MboII	GAAGA	2 cut(s)	145, 154
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	2 cut(s)	111, 114
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	12
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	1 cut(s)	8
SgeI	CNNG	5 cut(s)	23, 24, 59, 70, 110
SinI	GGWCC	1 cut(s)	19
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	10
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspDTI	ATGAA	3 cut(s)	43, 50, 155
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.