Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

16611660 .. 16612088

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTTTTTTACTTATACGTAACCCGATGTAAGCAGCTGTTGAATTACAATAATATGGAGACTGATAATGGTGACAAGGAGAAGAGTGAGGAAGATGACTTGTGTGCTCTGAAGGATGCACTTGAGGCTGTTATATTGTTTCAAGGTTTAAGTGAATATCAAAAGAAGTTGATGTTTCCAAACTTGAAGAATCTTGGAGCTGAAACAATTAAAGAGCTCATCGATGAATGGAAGGAGTTGAATGTTGAGGAGCTAAATTTGAACATCAAGAAACAAACTTTCTTTACAAAGTTTGCAAACGCTAGCTGGAGTTTGATGTTACTTATTCAACAAGAAAATAATTTCTGCTTTTGGATGTTTTATGTTATTCCTACTTCATTGTTTTTTGTGTGTTGTGTGTTGCTGCATCTTTTGAATGATGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573 TRAM_LAG1_CLN8

Protein Analysis

142

Amino Acids

16.72

Weight (kDa)

4.7

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	131
AgsI	TTSAA	7 cut(s)	43, 143, 187, 241, 262, 329, 415
AluBI	AGCT	5 cut(s)	37, 200, 217, 253, 306
AluI	AGCT	5 cut(s)	37, 200, 217, 253, 306
Alw21I	GWGCWC	2 cut(s)	109, 219
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	34, 403
ApoI	RAATTY	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	109, 219
BbvI	GCAGC	2 cut(s)	46, 390
BccI	CCATC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	35, 404
BlsI	GCNGC	2 cut(s)	36, 405
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	2 cut(s)	106, 415
BmtI	GCTAGC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	2 cut(s)	121, 360
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	46, 390
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	109, 219
BsmAI	GTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	109, 219
Bsp143I	GATC	1 cut(s)	422
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	417
BssMI	GATC	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	121, 360
BstKTI	GATC	1 cut(s)	425
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSNI	TACGTA	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	46, 390
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	121, 360
Cac8I	GCNNGC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	222
CviJI	RGCY	6 cut(s)	37, 128, 200, 217, 253, 306
CviKI_1	RGCY	6 cut(s)	37, 128, 200, 217, 253, 306
DpnI	GATC	1 cut(s)	424
DpnII	GATC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	217
Eco105I	TACGTA	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	219
FaiI	YATR	4 cut(s)	16, 56, 134, 363
Fnu4HI	GCNGC	2 cut(s)	35, 404
FokI	GGATG	2 cut(s)	128, 367
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	35, 404
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	35, 404
GsuI	CTGGAG	1 cut(s)	328
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	106, 226
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	119, 296, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	422
LmnI	GCTCC	2 cut(s)	197, 250
LpnPI	CCDG	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	46, 390
LweI	GCATC	2 cut(s)	106, 415
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	19, 71, 318
MalI	GATC	1 cut(s)	424
MboI	GATC	1 cut(s)	422
MboII	GAAGA	3 cut(s)	94, 104, 199
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	109, 219
MluCI	AATT	4 cut(s)	43, 207, 256, 340
MnlI	CCTC	3 cut(s)	82, 118, 241
MseI	TTAA	2 cut(s)	149, 210
MspA1I	CMGCKG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	422
NheI	GCTAGC	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	36, 405
Ppu21I	YACGTR	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	149, 210
SatI	GCNGC	2 cut(s)	35, 404
Sau3AI	GATC	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	109, 219
SetI	ASST	7 cut(s)	21, 39, 148, 202, 219, 255, 308
SfaNI	GCATC	2 cut(s)	106, 415
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SnaBI	TACGTA	1 cut(s)	19
Sse9I	AATT	4 cut(s)	43, 207, 256, 340
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	219
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	43, 207, 256, 340
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	149, 210
Tru9I	TTAA	2 cut(s)	149, 210
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	34, 403
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	240, 366
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.