MD05G1335900.v1.1

Mediator-associated protein 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
45834950 .. 45836167
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1335900.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGGCTCCCAAACGCCCATCTCCGCTGGACGAACCGCCGGCAGCTTCTTCGTCGGAAGGTCAGGAAGTCTCGTCGGAGGAAGAAGAAGGGGAAGAAGAGGAATCCGGATCTGGGTCAGATTCCGAACCCGAAGAGCCTCTGCCTCCGAAGACCTCGTCTTCAGCACCGGTTGCCGAGAAGAAGCCACCGCCCAAGAAACCGGACTCCTCTGCCGCCAATTCCAAGCCGCAGTCTTCATCCTCTGGTTCCGAGGACGATTCCGATTCCGATGTGGATAAGGATTTGGTGGTGAAGCCGATTGCTTCGAAGCCAATGGAAGAGACGCCGAAGACAAAGAAGCCCAGATCAAAGCCCGCGGCTACTGCTACGCCGGCGGCGAAATCCGGGTCCAAACGGCCCAGCGAGACCGAGCCCAAGGATTCAAAGCGGCCAAAGAAGAAGGGAGCTGCGACGGAGCAGGATCCGGACCAGGTCGAGGAGGAAGCGAAGAAGTCCAAGCTGTTCCAGAGGATTTGGAGCGATGAGGATGAGGTAATTATCTTGAAAGGCATGGTTGATTATACCAGCAAGAAAGGGGCGGACCCGTATTCCGATATGGGTGCGTTCCATGACTTTATCAAGAAATCGCTGAAGGTGGATGTGAACAAATCCCAATTGCAAGCTAAGATTCGTCGGCTGAAGAAGAAGTATGCGACTAATGTGAAGAAGAAGAAGTATAATCTTACAAAACCTCATGACCAGAAGGTGTTTGACTTGTCGAAGAAGGTATGGGGCGGCAGCGGCGAAGGGCCCAGTGGTGACAACGGGCCATCTGAACAGCCAAAGTCTAATGGGAAGGCTAGGAATACCAAGACTCTGGCTTCGATAAAAGCTGATATTTTGAGCTCACCGGAGCGTTCAAAAGAGGCCGCGAAGTTGGATTTGGGTCTGAATCCGTGCTCTTTGGAAAGTTTGAGTGAGGTGATTGGGTTTGACAAGAGTTTCAGGGAGCTGGGATTACCGGAGGGTGTGGTGAAACAAGGTTTGGAGTTGATTGGAGAGTCCAAGAGAGCTGAGTTGAAGGACAAGTGGAGGAAGCTGCATGTTGCTGAATTGGAGCTTTTTGTGAAGCGGAGCGAGTTAATGAGAGATCAGACGAAGGTGATTCTGGAGGCTTTAAAGTCATCCGGCCATTAG

Protein Analysis

392

Amino Acids

42.61

Weight (kDa)

8.66

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 168 - 258 3.6e-34 Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C PF22757 326 - 382 2.6e-06 Glabrous-enhancer-binding protein-like family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 356, 911
AccIII TCCGGA 2 cut(s) 104, 463
AclWI GGATC 3 cut(s) 115, 455, 468
AcoI YGGCCR 2 cut(s) 428, 1168
AcuI CTGAAG 3 cut(s) 144, 650, 698
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 111, 475
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 4 cut(s) 423, 544, 900, 1060
AjnI CCWGG 1 cut(s) 468
AjuI GAANNNNNNNTTGG 4 cut(s) 905, 937, 1007, 1039
Alw21I GWGCWC 2 cut(s) 887, 941
Alw26I GTCTC 3 cut(s) 73, 314, 398
AlwI GGATC 3 cut(s) 115, 455, 468
Aor13HI TCCGGA 2 cut(s) 104, 463
AoxI GGCC 6 cut(s) 395, 428, 788, 806, 906, 1168
ApaI GGGCCC 1 cut(s) 792
ApeKI GCWGC 4 cut(s) 41, 446, 777, 1078
ArsI GACNNNNNNTTYG 6 cut(s) 140, 172, 371, 403, 844, 876
AsiGI ACCGGT 1 cut(s) 166
AspS9I GGNCC 7 cut(s) 387, 396, 466, 580, 788, 789, 806
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 6 cut(s) 301, 809, 879, 973, 1024, 1153
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 3 cut(s) 387, 466, 580
BaeGI GKGCMC 1 cut(s) 792
BamHI GGATCC 1 cut(s) 460
BanII GRGCYC 3 cut(s) 414, 792, 887
BbsI GAAGAC 4 cut(s) 150, 155, 225, 335
Bbv12I GWGCWC 2 cut(s) 887, 941
BbvI GCAGC 4 cut(s) 53, 433, 789, 1065
BccI CCATC 2 cut(s) 25, 817
BceAI ACGGC 1 cut(s) 410
BcgI CGANNNNNNTGC 4 cut(s) 30, 64, 581, 615
BciT130I CCWGG 1 cut(s) 470
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 73, 314, 398
BfaI CTAG 1 cut(s) 840
Bme1390I CCNGG 2 cut(s) 385, 470
Bme18I GGWCC 3 cut(s) 387, 466, 580
BmgT120I GGNCC 7 cut(s) 387, 396, 466, 580, 788, 789, 806
BmiI GGNNCC 6 cut(s) 6, 247, 388, 462, 582, 790
BmrFI CCNGG 2 cut(s) 385, 470
BmrI ACTGGG 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 4 cut(s) 150, 155, 225, 335
BpmI CTGGAG 1 cut(s) 1169
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 249, 354, 414
BsaWI WCCGGW 6 cut(s) 104, 166, 199, 463, 889, 1000
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 475
Bse118I RCCGGY 3 cut(s) 37, 166, 370
Bse1I ACTGG 1 cut(s) 792
BseAI TCCGGA 2 cut(s) 104, 463
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 3 cut(s) 249, 354, 414
BseGI GGATG 4 cut(s) 236, 532, 643, 1163
BseLI CCNNNNNNNGG 2 cut(s) 111, 475
BseMII CTCAG 1 cut(s) 1044
BseNI ACTGG 1 cut(s) 792
BseRI GAGGAG 2 cut(s) 196, 491
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 4 cut(s) 53, 433, 789, 1065
BseYI CCCAGC 2 cut(s) 398, 991
Bsh1236I CGCG 2 cut(s) 356, 911
BshFI GGCC 6 cut(s) 397, 430, 790, 808, 908, 1170
BshTI ACCGGT 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 887, 941
BslI CCNNNNNNNGG 2 cut(s) 111, 475
BsmAI GTCTC 3 cut(s) 73, 314, 398
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 6 cut(s) 397, 430, 790, 808, 908, 1170
Bso31I GGTCTC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 305
Bsp120I GGGCCC 1 cut(s) 788
Bsp1286I GDGCHC 4 cut(s) 414, 792, 887, 941
Bsp13I TCCGGA 2 cut(s) 104, 463
Bsp143I GATC 4 cut(s) 107, 344, 460, 1129
BspANI GGCC 6 cut(s) 397, 430, 790, 808, 908, 1170
BspCNI CTCAG 1 cut(s) 1045
BspEI TCCGGA 2 cut(s) 104, 463
BspFNI CGCG 2 cut(s) 356, 911
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 6 cut(s) 6, 247, 388, 462, 582, 790
BspPI GGATC 3 cut(s) 115, 455, 468
BspQI GCTCTTC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 3 cut(s) 37, 166, 370
BsrI ACTGG 1 cut(s) 792
BssAI RCCGGY 3 cut(s) 37, 166, 370
BssECI CCNNGG 3 cut(s) 249, 354, 414
BssMI GATC 4 cut(s) 107, 344, 460, 1129
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 470
Bst6I CTCTTC 3 cut(s) 90, 126, 312
BstACI GRCGYC 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 39, 354, 372, 660
BstDEI CTNAG 2 cut(s) 663, 1053
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 236, 532, 643, 1163
BstFNI CGCG 2 cut(s) 356, 911
BstKTI GATC 4 cut(s) 110, 347, 463, 1132
BstMAI GTCTC 3 cut(s) 73, 314, 398
BstMBI GATC 4 cut(s) 107, 344, 460, 1129
BstMWI GCNNNNNNNGC 4 cut(s) 170, 362, 371, 780
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 2 cut(s) 383, 468
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 2 cut(s) 356, 911
BstV1I GCAGC 4 cut(s) 53, 433, 789, 1065
BstV2I GAAGAC 4 cut(s) 150, 155, 225, 335
BstX2I RGATCY 2 cut(s) 107, 460
BstXI CCANNNNNNTGG 1 cut(s) 856
BstYI RGATCY 2 cut(s) 107, 460
BsuRI GGCC 6 cut(s) 397, 430, 790, 808, 908, 1170
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 4 cut(s) 236, 532, 643, 1163
BtsIMutI CAGTG 1 cut(s) 799
Cac8I GCNNGC 4 cut(s) 39, 354, 372, 660
CciI TCATGA 1 cut(s) 733
Cfr10I RCCGGY 3 cut(s) 37, 166, 370
Cfr13I GGNCC 7 cut(s) 387, 396, 466, 580, 788, 789, 806
Cfr42I CCGCGG 1 cut(s) 357
CseI GACGC 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 468
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 4 cut(s) 550, 608, 734, 1082
DdeI CTNAG 2 cut(s) 663, 1053
DpnI GATC 4 cut(s) 109, 346, 462, 1131
DpnII GATC 4 cut(s) 107, 344, 460, 1129
DraI TTTAAA 1 cut(s) 1158
EaeI YGGCCR 2 cut(s) 428, 1168
Eam1104I CTCTTC 3 cut(s) 90, 126, 312
EarI CTCTTC 3 cut(s) 90, 126, 312
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 3 cut(s) 414, 792, 887
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 387, 466, 580
Eco53kI GAGCTC 1 cut(s) 885
Eco57I CTGAAG 3 cut(s) 144, 650, 698
EcoICRI GAGCTC 1 cut(s) 885
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 3 cut(s) 414, 792, 887
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 553, 611, 737, 1085
FaiI YATR 9 cut(s) 551, 561, 596, 609, 690, 717, 735, 769, 1083
FatI CATG 4 cut(s) 549, 607, 733, 1081
FauI CCCGC 1 cut(s) 361
FokI GGATG 4 cut(s) 223, 539, 650, 1150
FriOI GRGCYC 3 cut(s) 414, 792, 887
FspBI CTAG 1 cut(s) 840
GsaI CCCAGC 2 cut(s) 402, 995
GsuI CTGGAG 1 cut(s) 1169
HaeIII GGCC 6 cut(s) 397, 430, 790, 808, 908, 1170
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 4 cut(s) 553, 611, 737, 1085
HphI GGTGA 6 cut(s) 301, 809, 879, 973, 1024, 1153
Hpy166II GTNNAC 1 cut(s) 643
Hpy188III TCNNGA 8 cut(s) 62, 105, 464, 505, 541, 619, 734, 1148
Hpy8I GTNNAC 1 cut(s) 643
Hpy99I CGWCG 4 cut(s) 55, 76, 454, 675
HpyCH4V TGCA 2 cut(s) 658, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 362, 371, 780
HpyF3I CTNAG 2 cut(s) 663, 1053
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 4 cut(s) 553, 611, 737, 1085
Kpn2I TCCGGA 2 cut(s) 104, 463
KroI GCCGGC 2 cut(s) 37, 370
KroNI GCCGGC 2 cut(s) 39, 372
KspI CCGCGG 1 cut(s) 357
Kzo9I GATC 4 cut(s) 107, 344, 460, 1129
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 8 cut(s) 10, 443, 454, 516, 892, 988, 1096, 1113
Lsp1109I GCAGC 4 cut(s) 53, 433, 789, 1065
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 1 cut(s) 840
MaeIII GTNAC 1 cut(s) 797
MalI GATC 4 cut(s) 109, 346, 462, 1131
MboI GATC 4 cut(s) 107, 344, 460, 1129
MfeI CAATTG 1 cut(s) 653
MflI RGATCY 2 cut(s) 107, 460
MhlI GDGCHC 4 cut(s) 414, 792, 887, 941
MluCI AATT 4 cut(s) 217, 534, 653, 1091
MlyI GAGTC 3 cut(s) 197, 847, 1049
MmeI TCCRAC 3 cut(s) 33, 54, 897
MreI CGCCGGCG 1 cut(s) 370
MroI TCCGGA 2 cut(s) 104, 463
MroNI GCCGGC 2 cut(s) 37, 370
MseI TTAA 2 cut(s) 1121, 1157
MspA1I CMGCKG 3 cut(s) 25, 356, 780
MspR9I CCNGG 2 cut(s) 385, 470
MunI CAATTG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 2 cut(s) 356, 911
MwoI GCNNNNNNNGC 4 cut(s) 170, 362, 371, 780
NaeI GCCGGC 2 cut(s) 39, 372
NciI CCSGG 1 cut(s) 385
NdeII GATC 4 cut(s) 107, 344, 460, 1129
NgoMIV GCCGGC 2 cut(s) 37, 370
NlaIII CATG 4 cut(s) 553, 611, 737, 1085
NlaIV GGNNCC 6 cut(s) 6, 247, 388, 462, 582, 790
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 797
NspI RCATGY 1 cut(s) 1085
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdiI GCCGGC 2 cut(s) 39, 372
PfeI GAWTC 8 cut(s) 101, 119, 257, 263, 419, 667, 931, 1144
PflFI GACNNNGTC 2 cut(s) 154, 470
PinAI ACCGGT 1 cut(s) 166
PleI GAGTC 3 cut(s) 197, 847, 1048
PpsI GAGTC 3 cut(s) 197, 847, 1048
Psp124BI GAGCTC 1 cut(s) 887
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 2 cut(s) 398, 991
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 6 cut(s) 6, 247, 388, 462, 582, 790
PspOMI GGGCCC 1 cut(s) 788
PspPI GGNCC 7 cut(s) 387, 396, 466, 580, 788, 789, 806
PsuI RGATCY 2 cut(s) 107, 460
PsyI GACNNNGTC 2 cut(s) 154, 470
SacI GAGCTC 1 cut(s) 887
SacII CCGCGG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 1121, 1157
Sau3AI GATC 4 cut(s) 107, 344, 460, 1129
Sau96I GGNCC 7 cut(s) 387, 396, 466, 580, 788, 789, 806
SchI GAGTC 3 cut(s) 197, 847, 1049
ScrFI CCNGG 2 cut(s) 385, 470
SduI GDGCHC 4 cut(s) 414, 792, 887, 941
SexAI ACCWGGT 1 cut(s) 468
Sfr303I CCGCGG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 305
SgrAI CRCCGGYG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 357
SinI GGWCC 3 cut(s) 387, 466, 580
Sse9I AATT 4 cut(s) 217, 534, 653, 1091
SspMI CTAG 1 cut(s) 840
SstI GAGCTC 1 cut(s) 887
StyD4I CCNGG 2 cut(s) 383, 468
StyI CCWWGG 1 cut(s) 414
TaqI TCGA 4 cut(s) 305, 474, 758, 863
TaqII GACCGA 1 cut(s) 422
TasI AATT 4 cut(s) 217, 534, 653, 1091
TauI GCSGC 8 cut(s) 215, 229, 359, 377, 430, 777, 783, 911
TfiI GAWTC 8 cut(s) 101, 119, 257, 263, 419, 667, 931, 1144
Tru1I TTAA 2 cut(s) 1121, 1157
Tru9I TTAA 2 cut(s) 1121, 1157
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 4 cut(s) 41, 446, 777, 1078
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 2 cut(s) 467, 924
TspRI CASTG 1 cut(s) 799
Tth111I GACNNNGTC 2 cut(s) 154, 470
VpaK11BI GGWCC 3 cut(s) 387, 466, 580
XceI RCATGY 1 cut(s) 1085
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.