Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

16923440 .. 16924821

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAACAAGAAACTTCTCAACCCTCTTGAAGATCCACCAACCGCTTCTTCAAGCGAAGACGTCGACGAAGAGATTTCATCAGGAGAAGATGAAAAAGAACATATCTCCAATTCTTCTTCTTCTGAAGAAGAAAACGAACTCAAAGATCTCTCCACTCAAACCCTAAATTCTCCTTCCACCGAGGCTCCAACTCTCGATTCTGGATCTGAGACAAATTCCGACTCAGATAAGCCAATCGTCTTAACCAGTCAGAAGAAGAAAGAAGGTACTGATTCATCAGGGACGAAGCGAGCTAGTGAAGGAACTAGCTCAAAGGACATCAAAAGAGCTAAGAAAGTTTCAGGAGATGACGATAACAAAAAATTTCAGAGTTTATGGACTAAAGAAGATGAGATCTCTCTGTTACAAGGTATGATTGATTTCAAAGCTGAGACAGGTACAAGTGCTCATGATGATATGAATGGGTTTTTTGATATTGCTAAGAGATACATAAGCTTTGATGTTAGTAAGATCCAATTCGGTGACAAGATTAGAGGTTTAAAGAAGAAGTATTTTGGTGTAAGGAAGAAGAAAGGTTTAGACTTGGATCATGATAAGAAATGTTTGGGATTGGCTAAGTCTATTTGGGGACTTGATGGTAAGGAAGTGGTGGTTCTTGGAGGAGATTCGGAGACGTCGAATTGGTTTGAGAAGTCGTTTTTGGTTCGGGTTGTTGCGAGGCTTGGTGTGGATGAGTGTATTGTGAAGTGGAAATGGAGTAAGGTGTCTAAGGAGACTAAGAAGAGGATTGAAGAGAAGATGAAGATGGTGGAGGCTAAGGAACTTGAGTTGTTGTCGCAGAAGATAGATGTTTTGAAGGAGGTGGCTTCTGTGATTGCTGAAACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

296

Amino Acids

32.95

Weight (kDa)

5.36

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	122 - 210	9e-28	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	227 - 294	3.7e-31	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	63, 677
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	4 cut(s)	26, 211, 505, 594
AcsI	RAATTY	3 cut(s)	166, 214, 362
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	60, 674
AfaI	GTAC	2 cut(s)	268, 439
AgsI	TTSAA	5 cut(s)	29, 51, 424, 791, 856
AjuI	GAANNNNNNNTTGG	6 cut(s)	31, 63, 181, 213, 683, 715
AluBI	AGCT	5 cut(s)	293, 309, 329, 428, 495
AluI	AGCT	5 cut(s)	293, 309, 329, 428, 495
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	4 cut(s)	203, 425, 665, 767
AlwI	GGATC	4 cut(s)	26, 211, 505, 594
ApoI	RAATTY	3 cut(s)	166, 214, 362
AsuHPI	GGTGA	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	448
BccI	CCATC	2 cut(s)	629, 799
BcoDI	GTCTC	4 cut(s)	203, 425, 665, 767
BfaI	CTAG	2 cut(s)	294, 306
BglII	AGATCT	2 cut(s)	145, 393
BmiI	GGNNCC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	845
BsaHI	GRCGYC	2 cut(s)	60, 674
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	198, 237, 420
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	295, 642
BsmAI	GTCTC	4 cut(s)	203, 425, 665, 767
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	295, 642
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	3 cut(s)	199, 236, 421
BspHI	TCATGA	2 cut(s)	448, 589
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	4 cut(s)	26, 211, 505, 594
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
BssNI	GRCGYC	2 cut(s)	60, 674
Bst6I	CTCTTC	3 cut(s)	63, 776, 786
BstACI	GRCGYC	2 cut(s)	60, 674
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	9 cut(s)	207, 223, 330, 429, 480, 615, 768, 777, 816
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	6 cut(s)	34, 148, 206, 396, 513, 589
BstMAI	GTCTC	4 cut(s)	203, 425, 665, 767
BstMBI	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	5 cut(s)	31, 145, 203, 393, 510
BstYI	RGATCY	5 cut(s)	31, 145, 203, 393, 510
BtsCI	GGATG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	2 cut(s)	448, 589
Csp6I	GTAC	2 cut(s)	267, 438
CviAII	CATG	2 cut(s)	449, 590
CviQI	GTAC	2 cut(s)	267, 438
DdeI	CTNAG	9 cut(s)	207, 223, 330, 429, 480, 615, 768, 777, 816
DpnI	GATC	6 cut(s)	33, 147, 205, 395, 512, 588
DpnII	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
DraI	TTTAAA	1 cut(s)	540
Eam1104I	CTCTTC	3 cut(s)	63, 776, 786
EarI	CTCTTC	3 cut(s)	63, 776, 786
Eco57I	CTGAAG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	2 cut(s)	452, 593
FaiI	YATR	7 cut(s)	102, 376, 413, 450, 458, 491, 591
FaqI	GGGAC	2 cut(s)	295, 642
FatI	CATG	2 cut(s)	448, 589
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	1 cut(s)	743
FspBI	CTAG	2 cut(s)	294, 306
Hin1I	GRCGYC	2 cut(s)	60, 674
Hin1II	CATG	2 cut(s)	452, 593
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	4 cut(s)	197, 221, 272, 665
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	7 cut(s)	124, 208, 220, 226, 252, 369, 670
Hpy188III	TCNNGA	7 cut(s)	26, 81, 194, 201, 342, 449, 590
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	65, 68, 679
HpyAV	CCTTC	4 cut(s)	183, 257, 293, 850
HpyCH4IV	ACGT	2 cut(s)	60, 674
HpyF3I	CTNAG	9 cut(s)	207, 223, 330, 429, 480, 615, 768, 777, 816
HpySE526I	ACGT	2 cut(s)	60, 674
Hsp92I	GRCGYC	2 cut(s)	60, 674
Hsp92II	CATG	2 cut(s)	452, 593
Kzo9I	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	66, 186, 259, 264, 327, 420
MaeI	CTAG	2 cut(s)	294, 306
MaeII	ACGT	2 cut(s)	60, 674
MaeIII	GTNAC	2 cut(s)	402, 521
MalI	GATC	6 cut(s)	33, 147, 205, 395, 512, 588
MboI	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
MflI	RGATCY	5 cut(s)	31, 145, 203, 393, 510
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	6 cut(s)	109, 166, 214, 362, 515, 679
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	212, 243
MnlI	CCTC	8 cut(s)	33, 175, 527, 653, 711, 777, 805, 853
MseI	TTAA	2 cut(s)	242, 539
NdeII	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
NlaIII	CATG	2 cut(s)	452, 593
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	521
PagI	TCATGA	2 cut(s)	448, 589
PcsI	WCGNNNNNNNCGW	1 cut(s)	674
PfeI	GAWTC	3 cut(s)	197, 272, 665
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	5 cut(s)	31, 145, 203, 393, 510
RsaI	GTAC	2 cut(s)	268, 439
RsaNI	GTAC	2 cut(s)	267, 438
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	242, 539
Sau3AI	GATC	6 cut(s)	31, 145, 203, 393, 510, 586
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	448
SgrDI	CGTCGACG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	6 cut(s)	109, 166, 214, 362, 515, 679
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	294, 306
TaiI	ACGT	2 cut(s)	63, 677
TaqI	TCGA	3 cut(s)	63, 195, 677
TasI	AATT	6 cut(s)	109, 166, 214, 362, 515, 679
TfiI	GAWTC	3 cut(s)	197, 272, 665
Tru1I	TTAA	2 cut(s)	242, 539
Tru9I	TTAA	2 cut(s)	242, 539
TseFI	GTSAC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	6 cut(s)	17, 66, 105, 264, 473, 815
XapI	RAATTY	3 cut(s)	166, 214, 362
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	294, 306
ZraI	GACGTC	2 cut(s)	61, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.