Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8441915.1

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

855 .. 1599

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8441915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

gaagggaaatgatgaagaggacttgaagaaggccaagaagaggaagggaaatgatgaagaggacttgaagaaggccaagaagaagaagggaaatgatgaagaggacttgaagaaggccaagaagaaggggattgataaagaggacgatggtgtagaagaggagttggagaaacccaaacagctgttccagagggtttggagcgaggaagatgagatcattttgcttaaaggcatgaatgagtacactatggagaaaaggttggaccctagtgcagatgtgaatgcatttcttaacttcatcaaaggcaagttgaagttgaatgttagcaagagccagttacaggacaaaattcgcagaatgaagaaaaagtttgagaacattgtgaacaacaagtacaaaccgaccaatcctcatgaatgggcggctttcgagttgtcgaagaatgtgtggggagatggtgaagatctagatgggaaggtggaacagctcaagtctaatgggaattctcagaatatgttgagggaggttctttggtttgataacggtttcaaagagcttcggttgtctgaaactattgtgaaccaaggtctggagtggattgaggaatcaaactgtgctgaactgctaaaggataggtggaacaagctgcatgttgctgaattggagcattttgttatgaaggctgagcttatgagagatcaggccaagttgatattggaggcccttaagtcatcaaatcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

247

Amino Acids

28.89

Weight (kDa)

6.57

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	349, 503
AfaI	GTAC	2 cut(s)	243, 396
AfiI	CCNNNNNNNGG	3 cut(s)	40, 341, 590
AflII	CTTAAG	1 cut(s)	726
AgsI	TTSAA	6 cut(s)	26, 68, 110, 314, 320, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	5 cut(s)	182, 488, 557, 647, 689
AluI	AGCT	5 cut(s)	182, 488, 557, 647, 689
AoxI	GGCC	5 cut(s)	31, 73, 115, 703, 721
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	2 cut(s)	349, 503
AspS9I	GGNCC	2 cut(s)	263, 722
AsuHPI	GGTGA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	3 cut(s)	141, 450, 465
BfaI	CTAG	2 cut(s)	268, 468
BfrI	CTTAAG	1 cut(s)	726
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	2 cut(s)	424, 648
BlpI	GCTNAGC	1 cut(s)	685
BlsI	GCNGC	2 cut(s)	425, 649
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	263, 722
BmiI	GGNNCC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	612
Bpu1102I	GCTNAGC	1 cut(s)	685
BpuEI	CTTGAG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 341, 590
Bse1I	ACTGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	584
BseLI	CCNNNNNNNGG	3 cut(s)	40, 341, 590
BseMII	CTCAG	2 cut(s)	522, 676
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	33, 75, 117, 705, 723
BslI	CCNNNNNNNGG	3 cut(s)	40, 341, 590
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	33, 75, 117, 705, 723
Bsp143I	GATC	3 cut(s)	214, 464, 698
Bsp1720I	GCTNAGC	1 cut(s)	685
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	5 cut(s)	33, 75, 117, 705, 723
BspCNI	CTCAG	2 cut(s)	521, 677
BspHI	TCATGA	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	3 cut(s)	214, 464, 698
BssT1I	CCWWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	546, 615
Bst6I	CTCTTC	5 cut(s)	10, 33, 52, 94, 151
BstAFI	CTTAAG	1 cut(s)	726
BstDEI	CTNAG	2 cut(s)	508, 685
BstKTI	GATC	3 cut(s)	217, 467, 701
BstMBI	GATC	3 cut(s)	214, 464, 698
BstNSI	RCATGY	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	5 cut(s)	33, 75, 117, 705, 723
CciI	TCATGA	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	263, 722
Csp6I	GTAC	2 cut(s)	242, 395
CviAII	CATG	3 cut(s)	233, 414, 651
CviQI	GTAC	2 cut(s)	242, 395
DdeI	CTNAG	2 cut(s)	508, 685
DpnI	GATC	3 cut(s)	216, 466, 700
DpnII	GATC	3 cut(s)	214, 464, 698
Eam1104I	CTCTTC	5 cut(s)	10, 33, 52, 94, 151
EarI	CTCTTC	5 cut(s)	10, 33, 52, 94, 151
Eco130I	CCWWGG	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	3 cut(s)	236, 417, 654
FaiI	YATR	7 cut(s)	234, 249, 415, 516, 652, 678, 693
FatI	CATG	3 cut(s)	232, 413, 650
Fnu4HI	GCNGC	2 cut(s)	424, 648
Fsp4HI	GCNGC	2 cut(s)	424, 648
FspBI	CTAG	2 cut(s)	268, 468
GluI	GCNGC	2 cut(s)	424, 648
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	5 cut(s)	33, 75, 117, 705, 723
Hin1II	CATG	3 cut(s)	236, 417, 654
HinfI	GANTC	1 cut(s)	606
HphI	GGTGA	1 cut(s)	471
Hpy166II	GTNNAC	3 cut(s)	244, 386, 581
Hpy188I	TCNGA	2 cut(s)	511, 569
Hpy188III	TCNNGA	4 cut(s)	188, 414, 468, 591
Hpy8I	GTNNAC	3 cut(s)	244, 386, 581
HpyAV	CCTTC	8 cut(s)	23, 38, 65, 80, 107, 119, 470, 674
HpyCH4III	ACNGT	2 cut(s)	546, 615
HpyCH4V	TGCA	3 cut(s)	273, 285, 650
HpyF3I	CTNAG	2 cut(s)	508, 685
Hsp92II	CATG	3 cut(s)	236, 417, 654
Kzo9I	GATC	3 cut(s)	214, 464, 698
LmnI	GCTCC	2 cut(s)	199, 665
LpnPI	CCDG	5 cut(s)	201, 327, 348, 576, 687
Lsp1109I	GCAGC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	268, 468
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	3 cut(s)	216, 466, 700
MboI	GATC	3 cut(s)	214, 464, 698
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	3 cut(s)	349, 503, 660
MmeI	TCCRAC	2 cut(s)	145, 241
Mph1103I	ATGCAT	1 cut(s)	287
MseI	TTAA	3 cut(s)	226, 292, 727
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	287
NdeII	GATC	3 cut(s)	214, 464, 698
NlaIII	CATG	3 cut(s)	236, 417, 654
NlaIV	GGNNCC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	1 cut(s)	654
PagI	TCATGA	1 cut(s)	413
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	425, 649
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	263, 722
PsrI	GAACNNNNNNTAC	2 cut(s)	378, 410
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	243, 396
RsaNI	GTAC	2 cut(s)	242, 395
SaqAI	TTAA	3 cut(s)	226, 292, 727
SatI	GCNGC	2 cut(s)	424, 648
Sau3AI	GATC	3 cut(s)	214, 464, 698
Sau96I	GGNCC	2 cut(s)	263, 722
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	489, 726
SmoI	CTYRAG	2 cut(s)	489, 726
Sse9I	AATT	3 cut(s)	349, 503, 660
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	268, 468
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	546, 615
TaqI	TCGA	2 cut(s)	430, 438
TasI	AATT	3 cut(s)	349, 503, 660
TatI	WGTACW	2 cut(s)	241, 394
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	226, 292, 727
Tru9I	TTAA	3 cut(s)	226, 292, 727
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	8 cut(s)	28, 70, 112, 249, 287, 375, 430, 693
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	726
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	349, 503
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	1 cut(s)	654
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XspI	CTAG	2 cut(s)	268, 468
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.