Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

171487 .. 172845

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACGAAGAAACTCGATCCACCAACGGCACCTTCAAGCGACGAAGATGACGTCGAGACTTCCGAAGATGATTCCTCTTCATCTGAAGAAGACGAACCAATCAAATCCCTTCCCGCCACAACCGCCGCTGCTCCTGCTAAATCCACCGCCGTCTCCGCCGCTACTCCAGCTAAATCCACCTCCGTCTCCGCCGCTGCTCCTTCTAAATCCACCGCCGTCTCCGCCGCTGCTGATTCCGATTCTGGTTCGGAGAGTGAAACAGATTCGGATTCTGAATCGACGGATCCTCCGAAATCTGGATCCGGTAAAACAATCGCTTCAAAGAAGAAAGATGATCCGTCGTCGTCGACTGCTACTTTAGCTTTACCGGCGGTGAAATCTGGAGCAAAGAGGGCAGCGAGTGAAGCTGCGACGACTTCAACGAAACGAGTCAAGAAAGATGAAGAGAGTGTAAAGAAGCCAGCACTTTTTCAAAGACTATGGAGTGACGATGACGAAATCTCTATGTTACAAGGAATGATAGATTATCATGCTGATACAGGGAAGTCTCCTTCCGCAGATACTAATGCGTTTTACGAGTTCCAGAAGAAATCTATCAGCTTTGAGGTTAGTAAGAGTCAATTCTCGGATAAGGTTAGGAGTTTAAGGAAGAAGTACCGTGCTAAAGAAGGAAAGGACGAACCTAGGTTTGTGAAAGCTCATGATAAGAAAGCTTTTGAATTGTCAAAGTTTATTTGGGGACCTAAAGGAATAGCTCTTGATTCTAATGCTAAGTCCAACGGTGTGTCGAAAAAGAGTGCGAGTAAGACGAAGGAGAAGCTTGATTCTGTAAAGCAAGACTTGGCGTTTGTTGGTGTTTCTTCAACTAATGGAGATGATTGGTTTGAGAAGTCGTCTCTTGCTAGGATGATTGCTGGTTCGGGTATTGATGAGTATTATGTGAGGCAGAAATGGAGTTCGTTTACTCTTGAGACTAAGAAGATTGTTGAAGAGAAGTTTCAGTTGATGCAAGCTAAAGAGCTTGAGGCTATGTTGGATAAGAGTGTGCGTTTGACTGACCTTACGTCTTACTTCGTTGATGCTTCGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

364

Amino Acids

39.21

Weight (kDa)

5.99

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	157 - 247	1.7e-33	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	293 - 357	4.2e-21	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	347
AclWI	GGATC	6 cut(s)	11, 278, 291, 294, 307, 329
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	7 cut(s)	36, 321, 420, 473, 719, 864, 989
AhdI	GACNNNNNGTC	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
Alw26I	GTCTC	7 cut(s)	50, 157, 190, 223, 552, 900, 965
AlwI	GGATC	6 cut(s)	11, 278, 291, 294, 307, 329
ApeKI	GCWGC	5 cut(s)	128, 194, 227, 395, 407
ArsI	GACNNNNNNTTYG	4 cut(s)	36, 68, 830, 862
AspA2I	CCTAGG	1 cut(s)	683
AspS9I	GGNCC	1 cut(s)	740
AsuHPI	GGTGA	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	1085
AvaII	GGWCC	1 cut(s)	740
AvrII	CCTAGG	1 cut(s)	683
BamHI	GGATCC	2 cut(s)	283, 299
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	115, 181, 214, 394, 407
BceAI	ACGGC	3 cut(s)	42, 134, 200
BcoDI	GTCTC	7 cut(s)	50, 157, 190, 223, 552, 900, 965
BfaI	CTAG	3 cut(s)	684, 903, 1093
BisI	GCNGC	9 cut(s)	126, 129, 159, 192, 195, 225, 228, 396, 408
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	9 cut(s)	127, 130, 160, 193, 196, 226, 229, 397, 409
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	1063
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	4 cut(s)	30, 285, 301, 741
BmsI	GCATC	2 cut(s)	996, 1069
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	150, 402
Bpu14I	TTCGAA	1 cut(s)	1085
BpuEI	CTTGAG	2 cut(s)	989, 1043
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseXI	GCAGC	5 cut(s)	115, 181, 214, 394, 407
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	303, 368
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	7 cut(s)	50, 157, 190, 223, 552, 900, 965
BsmBI	CGTCTC	4 cut(s)	157, 190, 223, 900
BsmFI	GGGAC	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp143I	GATC	4 cut(s)	16, 283, 299, 334
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	4 cut(s)	30, 285, 301, 741
BspPI	GGATC	6 cut(s)	11, 278, 291, 294, 307, 329
BspT104I	TTCGAA	1 cut(s)	1085
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	4 cut(s)	16, 283, 299, 334
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	683
Bst4CI	ACNGT	2 cut(s)	659, 782
Bst6I	CTCTTC	3 cut(s)	82, 438, 984
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	2 cut(s)	462, 1011
BstDEI	CTNAG	2 cut(s)	771, 975
BstF5I	GGATG	1 cut(s)	912
BstKTI	GATC	4 cut(s)	19, 286, 302, 337
BstMAI	GTCTC	7 cut(s)	50, 157, 190, 223, 552, 900, 965
BstMBI	GATC	4 cut(s)	16, 283, 299, 334
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 134, 155, 167, 221, 359, 368, 392, 404
BstV1I	GCAGC	5 cut(s)	115, 181, 214, 394, 407
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	283, 299
BstYI	RGATCY	2 cut(s)	283, 299
BtsCI	GGATG	1 cut(s)	912
Cac8I	GCNNGC	2 cut(s)	462, 1011
CciI	TCATGA	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	530, 701
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	2 cut(s)	771, 975
DpnI	GATC	4 cut(s)	18, 285, 301, 336
DpnII	GATC	4 cut(s)	16, 283, 299, 334
DriI	GACNNNNNGTC	1 cut(s)	1063
Eam1104I	CTCTTC	3 cut(s)	82, 438, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	1063
EarI	CTCTTC	3 cut(s)	82, 438, 984
EciI	GGCGGA	3 cut(s)	145, 178, 211
Eco130I	CCWWGG	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	740
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
Esp3I	CGTCTC	4 cut(s)	157, 190, 223, 900
FaeI	CATG	2 cut(s)	533, 704
FaiI	YATR	6 cut(s)	481, 506, 531, 702, 939, 1031
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	2 cut(s)	529, 700
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	9 cut(s)	126, 129, 159, 192, 195, 225, 228, 396, 408
FokI	GGATG	1 cut(s)	919
Fsp4HI	GCNGC	9 cut(s)	126, 129, 159, 192, 195, 225, 228, 396, 408
FspBI	CTAG	3 cut(s)	684, 903, 1093
GluI	GCNGC	9 cut(s)	126, 129, 159, 192, 195, 225, 228, 396, 408
GsuI	CTGGAG	2 cut(s)	150, 402
HapII	CCGG	2 cut(s)	303, 368
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	533, 704
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	2 cut(s)	711, 818
HpaII	CCGG	2 cut(s)	303, 368
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	348, 963
Hpy188I	TCNGA	8 cut(s)	64, 85, 238, 250, 268, 274, 291, 628
Hpy188III	TCNNGA	8 cut(s)	55, 297, 381, 433, 583, 701, 758, 968
Hpy8I	GTNNAC	2 cut(s)	348, 963
Hpy99I	CGWCG	7 cut(s)	44, 56, 283, 343, 346, 349, 415
HpyAV	CCTTC	6 cut(s)	42, 119, 210, 561, 662, 805
HpyCH4III	ACNGT	2 cut(s)	659, 782
HpyCH4IV	ACGT	2 cut(s)	51, 1064
HpyCH4V	TGCA	1 cut(s)	1009
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 134, 155, 167, 221, 359, 368, 392, 404
HpyF3I	CTNAG	2 cut(s)	771, 975
HpySE526I	ACGT	2 cut(s)	51, 1064
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	533, 704
Kzo9I	GATC	4 cut(s)	16, 283, 299, 334
LmnI	GCTCC	3 cut(s)	136, 202, 383
Lsp1109I	GCAGC	5 cut(s)	115, 181, 214, 394, 407
LweI	GCATC	2 cut(s)	996, 1069
MaeI	CTAG	3 cut(s)	684, 903, 1093
MaeII	ACGT	2 cut(s)	51, 1064
MaeIII	GTNAC	2 cut(s)	485, 507
MalI	GATC	4 cut(s)	18, 285, 301, 336
MboI	GATC	4 cut(s)	16, 283, 299, 334
MflI	RGATCY	2 cut(s)	283, 299
MluCI	AATT	2 cut(s)	620, 719
MlyI	GAGTC	2 cut(s)	438, 625
MmeI	TCCRAC	2 cut(s)	801, 1014
MnlI	CCTC	7 cut(s)	85, 190, 297, 384, 598, 936, 1018
MseI	TTAA	1 cut(s)	644
MspA1I	CMGCKG	3 cut(s)	128, 194, 227
MspI	CCGG	2 cut(s)	303, 368
MwoI	GCNNNNNNNGC	9 cut(s)	122, 134, 155, 167, 221, 359, 368, 392, 404
NdeII	GATC	4 cut(s)	16, 283, 299, 334
NlaIII	CATG	2 cut(s)	533, 704
NlaIV	GGNNCC	4 cut(s)	30, 285, 301, 741
NmuCI	GTSAC	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	1085
PagI	TCATGA	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 60, 287, 419
PfeI	GAWTC	8 cut(s)	71, 233, 239, 263, 269, 275, 761, 824
PkrI	GCNGC	9 cut(s)	127, 130, 160, 193, 196, 226, 229, 397, 409
PleI	GAGTC	2 cut(s)	437, 624
PpsI	GAGTC	2 cut(s)	437, 624
PpuMI	RGGWCCY	1 cut(s)	740
Psp5II	RGGWCCY	1 cut(s)	740
PspN4I	GGNNCC	4 cut(s)	30, 285, 301, 741
PspPI	GGNCC	1 cut(s)	740
PspPPI	RGGWCCY	1 cut(s)	740
PsuI	RGATCY	2 cut(s)	283, 299
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	9 cut(s)	126, 129, 159, 192, 195, 225, 228, 396, 408
Sau3AI	GATC	4 cut(s)	16, 283, 299, 334
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	2 cut(s)	438, 625
SfaNI	GCATC	2 cut(s)	996, 1069
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	1 cut(s)	740
SmlI	CTYRAG	2 cut(s)	968, 1022
SmoI	CTYRAG	2 cut(s)	968, 1022
Sse9I	AATT	2 cut(s)	620, 719
SspMI	CTAG	3 cut(s)	684, 903, 1093
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	2 cut(s)	659, 782
TaiI	ACGT	2 cut(s)	54, 1067
TaqI	TCGA	6 cut(s)	15, 54, 278, 347, 788, 1085
TasI	AATT	2 cut(s)	620, 719
TauI	GCSGC	4 cut(s)	128, 161, 194, 227
TfiI	GAWTC	8 cut(s)	71, 233, 239, 263, 269, 275, 761, 824
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	5 cut(s)	128, 194, 227, 395, 407
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	69, 456
TspGWI	ACGGA	3 cut(s)	172, 296, 327
VpaK11BI	GGWCC	1 cut(s)	740
XmaJI	CCTAGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	3 cut(s)	684, 903, 1093
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.