Rmu_sc0002354.1_g000016

Mediator-associated protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002354.1
Physical Location & Seq
Forward (+)
71926 .. 73161
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002354.1_g000016.1.cds

Sequence Viewer

Length: 1236 bp
atggcacctaagcgcccgtctcccttggacgaaccgccggccgcttcttcatcggaggaagaggaagaagcctcgtcagaagaagaaggatccggatccgaatccgaggagtccgaatccgatgccgaagcaaccgagccacaaaagaccacctcgaccgcgcaagcaactcccgagaagaagccgcaagcgaagaagccggaatctgccgccgcaaagcctcagtcttcttcctccggcgagaccgaaaccgagtctgaatcggaatccgacggcgacacacttgcccagcgcagagtcaatgtcaagccgatcgcgtccaagcccatggaggaggtgacgcggccgccgaaggccaccaagcccagatcgaagccctctgcttcttctcctccggcgacggcgaaatccggcaccaagcgtcctggcggcgagagcgagttggttaaggactcgaagaaggctaagaagaagggagatgatccagaggaggatggtgtggaagaggaatcgaagaaatcgaaactgtttcagaggctttggagcgatgaagatgagattatcattctgaaagggatgaatgagtacaaaacgaagaagggggtggacccttatgctgatatgactgcatttcatgagtttatcaagaaatcgttgaaggtggatgttactaagatccaattgcaagataagattcggaggatgaggaagaagtttgagaacaatgtgaagaagaagcacaagccgactaaggctcatgactcgaagactttcaagttgtcgaagaaggtgtggggaggtggtgaagggggtgaagatttaactaggcaggctactattgcttcatttgggaagggggaacagcccaagtctaatgggaaggctaagggtaatcagaagagtaacagcaagactttggctgctctgaaagctgagctgttggcgtcgccggagactacaaaggaagatgggaagagtgaagctgaaaagtcgtgtgcatcagatagtgtgttgagtgaggttattgggtttcataagggtttcaaagagttggggttgtcggagactattgtgaagcagggtatggaattgattggtggatcaaagcgtgctgatttggaggataggtggagcaagctgcatgttgctgaattggagctttttgttcagaggactgagctcatgagagatcagggcaagttgatcttggaggccttcaagaaatcagaccattag

Protein Analysis

411

Amino Acids

44.97

Weight (kDa)

7.67

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 413
AccII CGCG 3 cut(s) 161, 317, 343
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 9 cut(s) 35, 42, 159, 185, 210, 213, 343, 347, 429
AclWI GGATC 7 cut(s) 84, 90, 97, 103, 476, 670, 1108
AcoI YGGCCR 2 cut(s) 39, 344
AcyI GRCGYC 1 cut(s) 944
AfaI GTAC 1 cut(s) 587
AgsI TTSAA 4 cut(s) 658, 775, 1045, 1219
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 6 cut(s) 932, 937, 983, 1138, 1159, 1180
AluI AGCT 6 cut(s) 932, 937, 983, 1138, 1159, 1180
Alw21I GWGCWC 1 cut(s) 1182
Alw26I GTCTC 4 cut(s) 24, 236, 947, 1058
AlwI GGATC 7 cut(s) 84, 90, 97, 103, 476, 670, 1108
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 4 cut(s) 39, 344, 354, 1212
ApeKI GCWGC 2 cut(s) 920, 1138
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
Asp700I GAANNNNTTC 1 cut(s) 770
AspLEI GCGC 3 cut(s) 15, 163, 294
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 3 cut(s) 349, 815, 824
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 607
BamHI GGATCC 2 cut(s) 89, 95
BanI GGYRCC 2 cut(s) 4, 413
BanII GRGCYC 1 cut(s) 1182
BbsI GAAGAC 2 cut(s) 219, 773
Bbv12I GWGCWC 1 cut(s) 1182
BbvI GCAGC 2 cut(s) 907, 1125
BccI CCATC 2 cut(s) 488, 962
BceAI ACGGC 2 cut(s) 289, 417
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 266, 300
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 4 cut(s) 24, 236, 947, 1058
BfaI CTAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 9 cut(s) 42, 185, 210, 213, 344, 347, 430, 921, 1139
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 9 cut(s) 43, 186, 211, 214, 345, 348, 431, 922, 1140
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 5 cut(s) 6, 91, 97, 415, 609
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 112, 1007
BpiI GAAGAC 2 cut(s) 219, 773
Bpu10I CCTNAGC 2 cut(s) 9, 885
Bpu1102I GCTNAGC 1 cut(s) 933
BsaBI GATNNNNATC 2 cut(s) 94, 100
BsaHI GRCGYC 1 cut(s) 944
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 24, 105, 327
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 1112, 1142
Bse118I RCCGGY 1 cut(s) 37
Bse8I GATNNNNATC 2 cut(s) 94, 100
BseAI TCCGGA 1 cut(s) 92
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 24, 105, 327
BseGI GGATG 4 cut(s) 499, 582, 670, 708
BseJI GATNNNNATC 2 cut(s) 94, 100
BseMII CTCAG 3 cut(s) 236, 924, 1167
BseRI GAGGAG 4 cut(s) 122, 347, 381, 503
BseX3I CGGCCG 2 cut(s) 39, 344
BseXI GCAGC 2 cut(s) 907, 1125
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 3 cut(s) 161, 317, 343
Bsh1285I CGRYCG 4 cut(s) 42, 159, 315, 347
BshFI GGCC 4 cut(s) 41, 346, 356, 1214
BshNI GGYRCC 2 cut(s) 4, 413
BsiEI CGRYCG 4 cut(s) 42, 159, 315, 347
BsiHKAI GWGCWC 1 cut(s) 1182
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 7 cut(s) 38, 93, 200, 237, 395, 411, 950
BsmAI GTCTC 4 cut(s) 24, 236, 947, 1058
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 4 cut(s) 41, 346, 356, 1214
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 1182
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 9 cut(s) 35, 42, 159, 185, 210, 213, 343, 347, 429
BspANI GGCC 4 cut(s) 41, 346, 356, 1214
BspCNI CTCAG 3 cut(s) 235, 925, 1168
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 3 cut(s) 161, 317, 343
BspHI TCATGA 3 cut(s) 634, 757, 1182
BspLI GGNNCC 5 cut(s) 6, 91, 97, 415, 609
BspPI GGATC 7 cut(s) 84, 90, 97, 103, 476, 670, 1108
BspT107I GGYRCC 2 cut(s) 4, 413
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 24, 105, 327
BssMI GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 2 cut(s) 24, 327
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 4 cut(s) 54, 498, 893, 968
BstACI GRCGYC 1 cut(s) 944
BstC8I GCNNGC 6 cut(s) 39, 165, 189, 831, 1110, 1136
BstDEI CTNAG 8 cut(s) 9, 222, 465, 672, 750, 885, 933, 1176
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 499, 582, 670, 708
BstFNI CGCG 3 cut(s) 161, 317, 343
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 3 cut(s) 15, 163, 294
BstKTI GATC 9 cut(s) 92, 98, 315, 371, 484, 678, 1103, 1192, 1206
BstMAI GTCTC 4 cut(s) 24, 236, 947, 1058
BstMBI GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
BstMCI CGRYCG 4 cut(s) 42, 159, 315, 347
BstMWI GCNNNNNNNGC 3 cut(s) 435, 839, 929
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 1145
BstSCI CCNGG 1 cut(s) 424
BstUI CGCG 3 cut(s) 161, 317, 343
BstV1I GCAGC 2 cut(s) 907, 1125
BstV2I GAAGAC 2 cut(s) 219, 773
BstX2I RGATCY 3 cut(s) 89, 95, 675
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 3 cut(s) 89, 95, 675
BstZI CGGCCG 2 cut(s) 39, 344
BsuRI GGCC 4 cut(s) 41, 346, 356, 1214
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 499, 582, 670, 708
Cac8I GCNNGC 6 cut(s) 39, 165, 189, 831, 1110, 1136
CciI TCATGA 3 cut(s) 634, 757, 1182
CciNI GCGGCCGC 1 cut(s) 344
CfoI GCGC 3 cut(s) 15, 163, 294
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 4 cut(s) 306, 349, 410, 933
Csp6I GTAC 1 cut(s) 586
CviAII CATG 5 cut(s) 328, 635, 758, 1142, 1183
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 8 cut(s) 9, 222, 465, 672, 750, 885, 933, 1176
DpnI GATC 9 cut(s) 91, 97, 314, 370, 483, 677, 1102, 1191, 1205
DpnII GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
EaeI YGGCCR 2 cut(s) 39, 344
EagI CGGCCG 2 cut(s) 39, 344
Eam1104I CTCTTC 4 cut(s) 54, 498, 893, 968
EarI CTCTTC 4 cut(s) 54, 498, 893, 968
Ecl136II GAGCTC 1 cut(s) 1180
EclXI CGGCCG 2 cut(s) 39, 344
Eco130I CCWWGG 2 cut(s) 24, 327
Eco147I AGGCCT 1 cut(s) 1214
Eco24I GRGCYC 1 cut(s) 1182
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 607
Eco52I CGGCCG 2 cut(s) 39, 344
Eco53kI GAGCTC 1 cut(s) 1180
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 1180
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 24, 327
EcoT38I GRGCYC 1 cut(s) 1182
ErhI CCWWGG 2 cut(s) 24, 327
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 5 cut(s) 331, 638, 761, 1145, 1186
FaiI YATR 9 cut(s) 329, 615, 623, 636, 759, 1035, 1085, 1143, 1184
FalI AAGNNNNNCTT 2 cut(s) 1190, 1222
FatI CATG 5 cut(s) 327, 634, 757, 1141, 1182
Fnu4HI GCNGC 9 cut(s) 42, 185, 210, 213, 344, 347, 430, 921, 1139
FokI GGATG 4 cut(s) 506, 589, 677, 715
FriOI GRGCYC 1 cut(s) 1182
Fsp4HI GCNGC 9 cut(s) 42, 185, 210, 213, 344, 347, 430, 921, 1139
FspBI CTAG 1 cut(s) 825
GlaI GCGC 3 cut(s) 14, 162, 293
GluI GCNGC 9 cut(s) 42, 185, 210, 213, 344, 347, 430, 921, 1139
GsaI CCCAGC 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 4 cut(s) 41, 346, 356, 1214
HapII CCGG 7 cut(s) 38, 93, 200, 237, 395, 411, 950
HgaI GACGC 4 cut(s) 306, 349, 410, 933
HhaI GCGC 3 cut(s) 15, 163, 294
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 5 cut(s) 331, 638, 761, 1145, 1186
Hin6I GCGC 3 cut(s) 13, 161, 292
HinP1I GCGC 3 cut(s) 13, 161, 292
HpaII CCGG 7 cut(s) 38, 93, 200, 237, 395, 411, 950
HphI GGTGA 3 cut(s) 349, 815, 824
Hpy166II GTNNAC 1 cut(s) 607
Hpy188III TCNNGA 8 cut(s) 93, 173, 485, 635, 646, 758, 1183, 1219
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 3 cut(s) 275, 403, 949
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 629, 685, 998, 1141
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 839, 929
HpyF3I CTNAG 8 cut(s) 9, 222, 465, 672, 750, 885, 933, 1176
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 5 cut(s) 331, 638, 761, 1145, 1186
HspAI GCGC 3 cut(s) 13, 161, 292
Kpn2I TCCGGA 1 cut(s) 92
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
LmnI GCTCC 3 cut(s) 543, 1131, 1156
Lsp1109I GCAGC 2 cut(s) 907, 1125
LweI GCATC 2 cut(s) 112, 1007
MaeI CTAG 1 cut(s) 825
MaeIII GTNAC 3 cut(s) 337, 667, 902
MalI GATC 9 cut(s) 91, 97, 314, 370, 483, 677, 1102, 1191, 1205
MboI GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 3 cut(s) 89, 95, 675
MhlI GDGCHC 1 cut(s) 1182
MluCI AATT 3 cut(s) 680, 1088, 1151
MlyI GAGTC 5 cut(s) 119, 263, 306, 446, 755
MmeI TCCRAC 2 cut(s) 294, 1041
MroI TCCGGA 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 2 cut(s) 447, 821
MspI CCGG 7 cut(s) 38, 93, 200, 237, 395, 411, 950
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 680
MvaI CCWGG 1 cut(s) 426
MvnI CGCG 3 cut(s) 161, 317, 343
MwoI GCNNNNNNNGC 3 cut(s) 435, 839, 929
NaeI GCCGGC 1 cut(s) 39
NcoI CCATGG 1 cut(s) 327
NdeII GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 5 cut(s) 331, 638, 761, 1145, 1186
NlaIV GGNNCC 5 cut(s) 6, 91, 97, 415, 609
NmuCI GTSAC 1 cut(s) 337
NotI GCGGCCGC 1 cut(s) 344
NspI RCATGY 1 cut(s) 1145
PagI TCATGA 3 cut(s) 634, 757, 1182
PceI AGGCCT 1 cut(s) 1214
PcsI WCGNNNNNNNCGW 2 cut(s) 347, 518
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 7 cut(s) 101, 116, 203, 260, 266, 509, 694
PkrI GCNGC 9 cut(s) 43, 186, 211, 214, 345, 348, 431, 922, 1140
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 5 cut(s) 118, 262, 305, 446, 755
PpsI GAGTC 5 cut(s) 118, 262, 305, 446, 755
Psp124BI GAGCTC 1 cut(s) 1182
Psp6I CCWGG 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 5 cut(s) 6, 91, 97, 415, 609
PspPI GGNCC 1 cut(s) 607
PsuI RGATCY 3 cut(s) 89, 95, 675
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
SacI GAGCTC 1 cut(s) 1182
SaqAI TTAA 2 cut(s) 447, 821
SatI GCNGC 9 cut(s) 42, 185, 210, 213, 344, 347, 430, 921, 1139
Sau3AI GATC 9 cut(s) 89, 95, 312, 368, 481, 675, 1100, 1189, 1203
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 5 cut(s) 119, 263, 306, 446, 755
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 1182
SfaNI GCATC 2 cut(s) 112, 1007
SinI GGWCC 1 cut(s) 607
Sse9I AATT 3 cut(s) 680, 1088, 1151
SseBI AGGCCT 1 cut(s) 1214
SsiI CCGC 9 cut(s) 35, 42, 159, 185, 210, 213, 343, 347, 429
SspMI CTAG 1 cut(s) 825
SstI GAGCTC 1 cut(s) 1182
StuI AGGCCT 1 cut(s) 1214
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 24, 327
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 7 cut(s) 155, 371, 455, 512, 521, 764, 782
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 680, 1088, 1151
TatI WGTACW 1 cut(s) 585
TauI GCSGC 7 cut(s) 44, 187, 212, 215, 346, 349, 432
TfiI GAWTC 7 cut(s) 101, 116, 203, 260, 266, 509, 694
Tru1I TTAA 2 cut(s) 447, 821
Tru9I TTAA 2 cut(s) 447, 821
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 920, 1138
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 39, 564, 593, 623, 834, 1022
VpaK11BI GGWCC 1 cut(s) 607
XceI RCATGY 1 cut(s) 1145
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.