Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

22793170 .. 22794714

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACGAAGAAACTCAATCCACTGGAAGATCCACCAACGGCAACTTCAAGCGACGAAGATGACGTCGAGACTTCCGAAGCTGGTGAAGCTTCAGACGATTCCTCTTCATCTGAAGAAGACGTACCAATCAAAATTCGAATCAAATCCCCTTCCGCCACAACCGCCGCCGCTCCTCCAGCTAAATCCACCGCCGTCTCCACCGCCGCTGATTCAGATTCTGGATCCGAGACTGAAACAGATTCGGATTCTGAATCAACAAATCCACCGAATTCTGGATCTGGGAAGACAATCGCTTTAAACACAGTGAATCTAAAGAAGAAAGAGGATCCAACGTCGTCGTCAGCTACTTTAGCTTTACCGGCGATGAAATCAGGAACAAAACGGCCAGCGAGTGAAGCTGCTGCTACGACTTCAACGAAACGAGTGAAGAAAGATGAAGAGAGTGTGAAGAAACCAGGAGGTTTTCAAAGACTATGGAGTGAAGAAGACGAAATCTTAGTGTTACAAGGAATGATTGATTTCAAAGCTGATACAGGGAAGTCTCCTTATGTAGATACTAATGCGTTTTACGATTTCTTGAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATCAATTCATGGATAAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAAGGAACGAACCTAGTTTTGTGAAAGCTCATGATAAGAAAGCTTTTGAATTGTCTAAGTTTATTTGGGGACCTAAAGGAATAGCTCTTGATTCTAATGTTAAGTCGAACGGTGTATCGAAAAAGAGTGTGGCGAAGAAGAAGATTGATTCTGTTAAGCAAGAGTTGGTGTTTGCCGGTGGTTCTTCAACTAATGGTAAAAAAGTTGAAGAAGATGGTGGTGATGATGGATGTGATTGGTTTGATAACTCGTCTCTTGTTAGGATGATTGCTAGTTTGGGTGTTGATGAGTATTATGTGAAGCAGCAATGGAGTTTGGTTTCGGTTGAGAGTAAGAAGATTGTTGAAGAGAAGTATAAGTTGTTGCAAGCTAAGGAGTTGGAATTTGTGTTGGAGAAGACTAAGTTTTTGAATGAGGTTGCTTCTATGTTCGTTGAAGCTTCTAAGAACAAGCCATTAGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

376

Amino Acids

40.88

Weight (kDa)

5.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	155 - 245	7.7e-35	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	300 - 365	5.7e-29	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	7 cut(s)	153, 162, 165, 168, 189, 201, 204
AclWI	GGATC	6 cut(s)	23, 216, 229, 283, 320, 333
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	132, 268, 1046
AcuI	CTGAAG	2 cut(s)	75, 132
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
Alw26I	GTCTC	5 cut(s)	62, 199, 221, 546, 921
AlwI	GGATC	6 cut(s)	23, 216, 229, 283, 320, 333
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	398, 401, 967
ApoI	RAATTY	3 cut(s)	132, 268, 1046
ArsI	GACNNNNNNTTYG	4 cut(s)	48, 80, 1054, 1086
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	95, 896
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	734
BamHI	GGATCC	2 cut(s)	221, 325
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbsI	GAAGAC	4 cut(s)	123, 290, 492, 1067
BbvI	GCAGC	3 cut(s)	385, 388, 979
BccI	CCATC	2 cut(s)	872, 884
BceAI	ACGGC	3 cut(s)	54, 176, 398
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	5 cut(s)	62, 199, 221, 546, 921
BfaI	CTAG	2 cut(s)	678, 936
BisI	GCNGC	6 cut(s)	165, 168, 204, 399, 402, 968
BlsI	GCNGC	6 cut(s)	166, 169, 205, 400, 403, 969
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	3 cut(s)	223, 327, 735
BmrFI	CCNGG	1 cut(s)	456
BpiI	GAAGAC	4 cut(s)	123, 290, 492, 1067
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	2 cut(s)	358, 839
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	977
BseBI	CCWGG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	587
BseGI	GGATG	2 cut(s)	899, 933
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	977
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	385, 388, 979
BshFI	GGCC	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	359, 840
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	5 cut(s)	62, 199, 221, 546, 921
BsmBI	CGTCTC	2 cut(s)	199, 921
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	28, 221, 275, 325
BspACI	CCGC	7 cut(s)	153, 162, 165, 168, 189, 201, 204
BspANI	GGCC	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	223, 327, 735
BspPI	GGATC	6 cut(s)	23, 216, 229, 283, 320, 333
BspT104I	TTCGAA	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	977
BsrFI	RCCGGY	2 cut(s)	358, 839
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	2 cut(s)	358, 839
BssMI	GATC	4 cut(s)	28, 221, 275, 325
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	304, 776
Bst6I	CTCTTC	3 cut(s)	109, 432, 1005
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	387, 1032
BstDEI	CTNAG	5 cut(s)	496, 720, 1035, 1065, 1107
BstF5I	GGATG	2 cut(s)	899, 933
BstKTI	GATC	4 cut(s)	31, 224, 278, 328
BstMAI	GTCTC	5 cut(s)	62, 199, 221, 546, 921
BstMBI	GATC	4 cut(s)	28, 221, 275, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 161, 176, 350, 359, 395
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstV1I	GCAGC	3 cut(s)	385, 388, 979
BstV2I	GAAGAC	4 cut(s)	123, 290, 492, 1067
BstX2I	RGATCY	4 cut(s)	28, 221, 275, 325
BstYI	RGATCY	4 cut(s)	28, 221, 275, 325
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	385
BsuTUI	ATCGAT	1 cut(s)	587
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	899, 933
BtsIMutI	CAGTG	2 cut(s)	20, 309
Cac8I	GCNNGC	2 cut(s)	387, 1032
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	694
Cfr10I	RCCGGY	2 cut(s)	358, 839
Cfr13I	GGNCC	1 cut(s)	734
ClaI	ATCGAT	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	2 cut(s)	619, 695
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	5 cut(s)	496, 720, 1035, 1065, 1107
DpnI	GATC	4 cut(s)	30, 223, 277, 327
DpnII	GATC	4 cut(s)	28, 221, 275, 325
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	3 cut(s)	109, 432, 1005
EarI	CTCTTC	3 cut(s)	109, 432, 1005
EciI	GGCGGA	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	2 cut(s)	75, 132
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	454
Esp3I	CGTCTC	2 cut(s)	199, 921
FaeI	CATG	2 cut(s)	622, 698
FaiI	YATR	9 cut(s)	475, 549, 620, 651, 696, 960, 1020, 1091, 1129
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	2 cut(s)	618, 694
Fnu4HI	GCNGC	6 cut(s)	165, 168, 204, 399, 402, 968
FokI	GGATG	2 cut(s)	906, 940
Fsp4HI	GCNGC	6 cut(s)	165, 168, 204, 399, 402, 968
FspBI	CTAG	2 cut(s)	678, 936
GluI	GCNGC	6 cut(s)	165, 168, 204, 399, 402, 968
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	2 cut(s)	359, 840
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	622, 698
HindIII	AAGCTT	3 cut(s)	87, 705, 1101
HpaII	CCGG	2 cut(s)	359, 840
HphI	GGTGA	2 cut(s)	95, 896
Hpy188I	TCNGA	7 cut(s)	76, 94, 112, 214, 226, 244, 250
Hpy188III	TCNNGA	7 cut(s)	67, 219, 273, 372, 577, 695, 752
Hpy99I	CGWCG	4 cut(s)	56, 68, 337, 340
HpyAV	CCTTC	3 cut(s)	159, 656, 660
HpyCH4III	ACNGT	2 cut(s)	304, 776
HpyCH4IV	ACGT	3 cut(s)	63, 120, 332
HpyCH4V	TGCA	1 cut(s)	1030
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 161, 176, 350, 359, 395
HpyF3I	CTNAG	5 cut(s)	496, 720, 1035, 1065, 1107
HpySE526I	ACGT	3 cut(s)	63, 120, 332
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	622, 698
Kzo9I	GATC	4 cut(s)	28, 221, 275, 325
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	385, 388, 979
MaeI	CTAG	2 cut(s)	678, 936
MaeII	ACGT	3 cut(s)	63, 120, 332
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	4 cut(s)	30, 223, 277, 327
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	4 cut(s)	28, 221, 275, 325
MflI	RGATCY	4 cut(s)	28, 221, 275, 325
MluCI	AATT	5 cut(s)	132, 268, 614, 713, 1046
MmeI	TCCRAC	3 cut(s)	353, 1023, 1035
MnlI	CCTC	6 cut(s)	112, 183, 316, 452, 592, 1072
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	4 cut(s)	296, 638, 765, 819
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	359, 840
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	6 cut(s)	86, 161, 176, 350, 359, 395
NdeII	GATC	4 cut(s)	28, 221, 275, 325
NlaIII	CATG	2 cut(s)	622, 698
NlaIV	GGNNCC	3 cut(s)	223, 327, 735
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 72, 413
PdmI	GAANNNNTTC	1 cut(s)	614
PkrI	GCNGC	6 cut(s)	166, 169, 205, 400, 403, 969
PpuMI	RGGWCCY	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	223, 327, 735
PspPI	GGNCC	1 cut(s)	734
PspPPI	RGGWCCY	1 cut(s)	734
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	4 cut(s)	28, 221, 275, 325
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	4 cut(s)	296, 638, 765, 819
SatI	GCNGC	6 cut(s)	165, 168, 204, 399, 402, 968
Sau3AI	GATC	4 cut(s)	28, 221, 275, 325
Sau96I	GGNCC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	734
Sse9I	AATT	5 cut(s)	132, 268, 614, 713, 1046
SsiI	CCGC	7 cut(s)	153, 162, 165, 168, 189, 201, 204
SspMI	CTAG	2 cut(s)	678, 936
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	304, 776
TaiI	ACGT	3 cut(s)	66, 123, 335
TaqI	TCGA	5 cut(s)	66, 136, 587, 770, 782
TasI	AATT	5 cut(s)	132, 268, 614, 713, 1046
TauI	GCSGC	3 cut(s)	167, 170, 206
Tru1I	TTAA	4 cut(s)	296, 638, 765, 819
Tru9I	TTAA	4 cut(s)	296, 638, 765, 819
TscAI	CASTG	2 cut(s)	27, 309
TseI	GCWGC	3 cut(s)	398, 401, 967
TspDTI	ATGAA	4 cut(s)	96, 380, 450, 607
TspRI	CASTG	2 cut(s)	27, 309
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	3 cut(s)	132, 268, 1046
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	2 cut(s)	678, 936
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.