Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

16716552 .. 16717558

Gene Structure 1007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41765.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACAAAGCGAATACCAACCGGTCCAAGAAGGAGGTTTGTGGTGGTTCTGGTGAAGCTAAGCCAACTGGAAAGAAACGGAAGAACGAAAGAACGTTAACGAACAAAAACGTGAATGCCAAGAAAAGTATGATGGATTTCAAAGCTCTAACAAGGCATAATCCTTCTGATGATATGACCGGAGCTTACAACTTCCTCCATGAATATATAAGCGTTGACGTTTATAGCTATGAGTTCGTAGAGAAGATGAAGAGTTTGAAGAAGAAATTAATAGAGAAAATGGGGATTAACGCTAAAGATCTGTCTTCTTCGATCGGTTCTGAGTTGTTAAAACTGATTTGGAGATATGATGTGAAATCTGTTGTTGAGTATAACTTACTTAAGATAGAACAAGCCAATTTCACATCACATCCCCAAATAAGTTTCAACAACTCGGAACCGAAGAAGACAAATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

152

Amino Acids

17.37

Weight (kDa)

9.59

Isoelectric Point (pI)

23.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	42 - 101	1.7e-07	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	380
AgeI	ACCGGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	142, 259, 427
AluBI	AGCT	4 cut(s)	59, 146, 185, 228
AluI	AGCT	4 cut(s)	59, 146, 185, 228
AseI	ATTAAT	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	297, 452
BccI	CCATC	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	298
BlpI	GCTNAGC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	297, 452
Bpu1102I	GCTNAGC	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	21, 179
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	22, 180
BsmI	GAATGC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	298, 312
Bsp1720I	GCTNAGC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	21
BssMI	GATC	2 cut(s)	298, 312
Bst6I	CTCTTC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	60, 321
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	301, 315
BstMBI	GATC	2 cut(s)	298, 312
BstMCI	CGRYCG	1 cut(s)	315
BstV2I	GAAGAC	2 cut(s)	297, 452
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	21
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	6 cut(s)	59, 64, 146, 185, 228, 395
CviKI_1	RGCY	6 cut(s)	59, 64, 146, 185, 228, 395
DdeI	CTNAG	2 cut(s)	60, 321
DpnI	GATC	2 cut(s)	300, 314
DpnII	GATC	2 cut(s)	298, 312
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	24
FaeI	CATG	1 cut(s)	203
FatI	CATG	1 cut(s)	199
FokI	GGATG	1 cut(s)	396
HapII	CCGG	2 cut(s)	22, 180
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	2 cut(s)	99, 217
HindII	GTYRAC	2 cut(s)	99, 217
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	2 cut(s)	22, 180
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	99, 217
Hpy188I	TCNGA	3 cut(s)	169, 322, 436
Hpy8I	GTNNAC	2 cut(s)	99, 217
HpyAV	CCTTC	2 cut(s)	25, 174
HpyCH4IV	ACGT	3 cut(s)	95, 111, 219
HpyF3I	CTNAG	2 cut(s)	60, 321
HpySE526I	ACGT	3 cut(s)	95, 111, 219
Hsp92II	CATG	1 cut(s)	203
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	298, 312
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	35, 36, 54, 193
MaeII	ACGT	3 cut(s)	95, 111, 219
MalI	GATC	2 cut(s)	300, 314
MboI	GATC	2 cut(s)	298, 312
MboII	GAAGA	9 cut(s)	94, 256, 262, 271, 274, 297, 300, 454, 457
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	266, 397
MnlI	CCTC	2 cut(s)	28, 206
MseI	TTAA	5 cut(s)	98, 269, 288, 329, 381
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	22, 180
Mva1269I	GAATGC	1 cut(s)	121
NdeII	GATC	2 cut(s)	298, 312
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	315
SaqAI	TTAA	5 cut(s)	98, 269, 288, 329, 381
Sau3AI	GATC	2 cut(s)	298, 312
Sau96I	GGNCC	1 cut(s)	24
SetI	ASST	8 cut(s)	39, 61, 98, 114, 148, 187, 222, 230
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	266, 397
TaiI	ACGT	3 cut(s)	98, 114, 222
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	266, 397
Tru1I	TTAA	5 cut(s)	98, 269, 288, 329, 381
Tru9I	TTAA	5 cut(s)	98, 269, 288, 329, 381
TspDTI	ATGAA	2 cut(s)	216, 263
TspGWI	ACGGA	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	24
VspI	ATTAAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.