Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

1564146 .. 1567056

Gene Structure 2911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCACCTAAGCGCCCGTCACCCTTGGACGAACCGCCGGCCGCTTCTTCATCGGAGGAAGAGCAGGAAGCCTCATCGGAAGAAGCAGCATCCGGATCCGGATCTGAGGAGTCCGAATCCGAAACCGAAGCTTCCGAGCCTCCGAAGACCACCTCCACGGCGAAGCCGCAACCGAAGAAGCCGGAATCCGCCGCCGCCGCAAAGCCCCAGTCATCTTCCTCCGGCGAGACGGAAACCGATTCTGAGTCCGAATCCGACGGCGAAAATCTCGGCAACAGCAAAGTGCATGTCAAGCCGATCGCCTCCAAGCCCATGGAAGCGGTCACGCCGCCGCCGAAGGCAACCAAGCCCAGATCGAAGCCAGCTGCTTCTCCGGCGACAGCGAAATCCGGCACCAAGCGGCCTAACGGCGGCGAGAGCGAGCTGAATAAGGACTCGAAGAAGGCGAAGAAGAAGGGAGATGATCAGGAGGAGGATGGAGTAGAAGAGGAATCTTCGAAGAAATCGAAACTGTTTCAGAGGCTTTGGAGCGATGAAGATGAGATTATTATCCTGAAAGGGATGAATGATTACGCCACGAAGAAAGGAGTGGATCCTTATGCTGACATGGGTGCATTCCATGAGTTTATCAAGAAATCGCTGAAGGTGGATGTGTCGAAGATCCAATTGCAAGATAAGATTAGGAGAATGAAGAAGAAGTTTGAGAACAATGTGAGGAAAAAGCACGAGCCGACTAAGCCTCATGAAAATAAGACTTACGAGCTGTCGAAGAAGGTTTGGGGAGGTGGTGAGGATTTAGGTGGGAAGACGGAACAGCCCAAGGCTAATGGGAAGGCGAAGGCTAAGAGTAATCAGAAGGGTAACAGCAAGACTCTGGCTTCTATGAAAGCTGATCTGCTGGCGTCCCCGGAGCCTTCAAAGGATGCTGAGAAGAGTGGAGCGTTTCTGAAGCGGGGTGCGTCTGGGAGTGTGTCGAGTGAGGTTATTGGGTTCGATAAGGGTTTCAAAGAGCTGGGGTTGTCTGAGACTATTGTGCAGCAGGGGCTTGAGTTGATTGGTGGATCGAAATGCGCTGCGCTGAAGGATAAGTGGAACGAATTGCATGTTGCTGAACTGGAACTTTTTGTCAAGAGGACTGAGCTGATGAGAAATCAGGCCCAGATGATATTGGAGGCCATCAAGTCAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

398

Amino Acids

42.9

Weight (kDa)

7.67

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	172 - 261	9.1e-32	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 392
AccIII	TCCGGA	2 cut(s)	92, 98
AclWI	GGATC	7 cut(s)	90, 103, 109, 587, 600, 655, 1069
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	3 cut(s)	662, 968, 1100
AcyI	GRCGYC	1 cut(s)	902
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	918, 1006
AluBI	AGCT	7 cut(s)	131, 365, 424, 763, 890, 1012, 1141
AluI	AGCT	7 cut(s)	131, 365, 424, 763, 890, 1012, 1141
Alw26I	GTCTC	2 cut(s)	221, 1019
AlwI	GGATC	7 cut(s)	90, 103, 109, 587, 600, 655, 1069
Aor13HI	TCCGGA	2 cut(s)	92, 98
AoxI	GGCC	4 cut(s)	39, 401, 1155, 1173
ApeKI	GCWGC	4 cut(s)	86, 365, 1036, 1073
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 273, 305
AspLEI	GCGC	3 cut(s)	15, 1073, 1078
AspS9I	GGNCC	1 cut(s)	1156
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	2 cut(s)	12, 800
AsuII	TTCGAA	1 cut(s)	497
BamHI	GGATCC	2 cut(s)	95, 592
BanI	GGYRCC	2 cut(s)	4, 392
BauI	CACGAG	1 cut(s)	725
BbsI	GAAGAC	2 cut(s)	152, 812
BbvI	GCAGC	4 cut(s)	98, 352, 1048, 1060
BccI	CCATC	2 cut(s)	470, 1184
BceAI	ACGGC	3 cut(s)	174, 274, 424
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	2 cut(s)	221, 1019
BfoI	RGCGCY	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	1156
BmiI	GGNNCC	5 cut(s)	6, 97, 394, 594, 912
BmrFI	CCNGG	1 cut(s)	908
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	98, 913
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	152, 812
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	1067
BpuMI	CCSGG	1 cut(s)	908
BsaBI	GATNNNNATC	2 cut(s)	100, 548
BsaHI	GRCGYC	1 cut(s)	902
BsaJI	CCNNGG	5 cut(s)	24, 156, 312, 819, 906
BsaWI	WCCGGW	2 cut(s)	92, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	208, 1119
Bse8I	GATNNNNATC	2 cut(s)	100, 548
BseAI	TCCGGA	2 cut(s)	92, 98
BseDI	CCNNGG	5 cut(s)	24, 156, 312, 819, 906
BseGI	GGATG	5 cut(s)	89, 481, 567, 655, 928
BseJI	GATNNNNATC	2 cut(s)	100, 548
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	5 cut(s)	96, 234, 918, 1014, 1128
BseNI	ACTGG	2 cut(s)	208, 1119
BseRI	GAGGAG	2 cut(s)	122, 485
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	98, 352, 1048, 1060
BseYI	CCCAGC	1 cut(s)	1012
BsgI	GTGCAG	1 cut(s)	1055
Bsh1285I	CGRYCG	2 cut(s)	42, 300
BshFI	GGCC	4 cut(s)	41, 403, 1157, 1175
BshNI	GGYRCC	2 cut(s)	4, 392
BsiEI	CGRYCG	2 cut(s)	42, 300
BsiSI	CCGG	8 cut(s)	38, 93, 99, 182, 222, 374, 390, 908
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	221, 1019
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	4 cut(s)	41, 403, 1157, 1175
Bsp119I	TTCGAA	1 cut(s)	497
Bsp13I	TCCGGA	2 cut(s)	92, 98
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	4 cut(s)	41, 403, 1157, 1175
BspCNI	CTCAG	5 cut(s)	97, 235, 919, 1015, 1129
BspEI	TCCGGA	2 cut(s)	92, 98
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	5 cut(s)	6, 97, 394, 594, 912
BspPI	GGATC	7 cut(s)	90, 103, 109, 587, 600, 655, 1069
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	2 cut(s)	4, 392
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	208, 1119
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	24, 156, 312, 819, 906
BssNI	GRCGYC	1 cut(s)	902
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	3 cut(s)	24, 312, 819
Bst2BI	CACGAG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	3 cut(s)	54, 480, 926
BstACI	GRCGYC	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	39, 363, 422, 900
BstDEI	CTNAG	8 cut(s)	9, 105, 243, 735, 843, 927, 1023, 1137
BstDSI	CCRYGG	2 cut(s)	156, 312
BstF5I	GGATG	5 cut(s)	89, 481, 567, 655, 928
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	3 cut(s)	15, 1073, 1078
BstMAI	GTCTC	2 cut(s)	221, 1019
BstMCI	CGRYCG	2 cut(s)	42, 300
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 292, 374, 417, 736, 1042
BstNSI	RCATGY	2 cut(s)	290, 1106
BstSCI	CCNGG	1 cut(s)	906
BstV1I	GCAGC	4 cut(s)	98, 352, 1048, 1060
BstV2I	GAAGAC	2 cut(s)	152, 812
BstX2I	RGATCY	4 cut(s)	95, 101, 592, 660
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	4 cut(s)	95, 101, 592, 660
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	41, 403, 1157, 1175
BtgI	CCRYGG	2 cut(s)	156, 312
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	5 cut(s)	89, 481, 567, 655, 928
Cac8I	GCNNGC	4 cut(s)	39, 363, 422, 900
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	3 cut(s)	15, 1073, 1078
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	1156
CseI	GACGC	2 cut(s)	891, 948
CviAII	CATG	6 cut(s)	287, 313, 607, 620, 743, 1103
DdeI	CTNAG	8 cut(s)	9, 105, 243, 735, 843, 927, 1023, 1137
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	54, 480, 926
EarI	CTCTTC	3 cut(s)	54, 480, 926
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	24, 312, 819
Eco52I	CGGCCG	1 cut(s)	39
Eco57I	CTGAAG	3 cut(s)	662, 968, 1100
EcoT14I	CCWWGG	3 cut(s)	24, 312, 819
ErhI	CCWWGG	3 cut(s)	24, 312, 819
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	6 cut(s)	290, 316, 610, 623, 746, 1106
FaiI	YATR	8 cut(s)	288, 314, 600, 608, 621, 744, 884, 1104
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	6 cut(s)	286, 312, 606, 619, 742, 1102
FauI	CCCGC	1 cut(s)	945
FbaI	TGATCA	1 cut(s)	463
FokI	GGATG	5 cut(s)	76, 488, 574, 662, 935
GlaI	GCGC	3 cut(s)	14, 1072, 1077
GsaI	CCCAGC	1 cut(s)	1016
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	4 cut(s)	41, 403, 1157, 1175
HapII	CCGG	8 cut(s)	38, 93, 99, 182, 222, 374, 390, 908
HgaI	GACGC	2 cut(s)	891, 948
HhaI	GCGC	3 cut(s)	15, 1073, 1078
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	6 cut(s)	290, 316, 610, 623, 746, 1106
Hin6I	GCGC	3 cut(s)	13, 1071, 1076
HinP1I	GCGC	3 cut(s)	13, 1071, 1076
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	9 cut(s)	110, 116, 185, 239, 245, 251, 434, 491, 871
HpaII	CCGG	8 cut(s)	38, 93, 99, 182, 222, 374, 390, 908
HphI	GGTGA	2 cut(s)	12, 800
Hpy188III	TCNNGA	7 cut(s)	93, 99, 467, 553, 631, 743, 1129
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	286, 614, 670, 1036, 1102
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 292, 374, 417, 736, 1042
HpyF3I	CTNAG	8 cut(s)	9, 105, 243, 735, 843, 927, 1023, 1137
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	6 cut(s)	290, 316, 610, 623, 746, 1106
HspAI	GCGC	3 cut(s)	13, 1071, 1076
Kpn2I	TCCGGA	2 cut(s)	92, 98
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	463
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	528, 910, 938
Lsp1109I	GCAGC	4 cut(s)	98, 352, 1048, 1060
LweI	GCATC	2 cut(s)	98, 913
MaeIII	GTNAC	3 cut(s)	18, 322, 860
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	4 cut(s)	95, 101, 592, 660
MluCI	AATT	2 cut(s)	665, 1097
MlyI	GAGTC	4 cut(s)	119, 254, 428, 865
MmeI	TCCRAC	1 cut(s)	279
MroI	TCCGGA	2 cut(s)	92, 98
MroNI	GCCGGC	1 cut(s)	37
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	8 cut(s)	38, 93, 99, 182, 222, 374, 390, 908
MspR9I	CCNGG	1 cut(s)	908
MteI	GCGCNGCGC	1 cut(s)	1074
MunI	CAATTG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	614
MwoI	GCNNNNNNNGC	6 cut(s)	197, 292, 374, 417, 736, 1042
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	908
NcoI	CCATGG	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	290, 316, 610, 623, 746, 1106
NlaIV	GGNNCC	5 cut(s)	6, 97, 394, 594, 912
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	18, 322
NspI	RCATGY	2 cut(s)	290, 1106
NspV	TTCGAA	1 cut(s)	497
PagI	TCATGA	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	332, 443, 503
PctI	GAATGC	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	5 cut(s)	116, 185, 239, 251, 491
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	4 cut(s)	118, 253, 428, 865
PpsI	GAGTC	4 cut(s)	118, 253, 428, 865
PspFI	CCCAGC	1 cut(s)	1012
PspN4I	GGNNCC	5 cut(s)	6, 97, 394, 594, 912
PspPI	GGNCC	1 cut(s)	1156
PsuI	RGATCY	4 cut(s)	95, 101, 592, 660
PvuI	CGATCG	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	365
SapI	GCTCTTC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	1156
SchI	GAGTC	4 cut(s)	119, 254, 428, 865
ScrFI	CCNGG	1 cut(s)	908
SfaNI	GCATC	2 cut(s)	98, 913
SfuI	TTCGAA	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
Sse9I	AATT	2 cut(s)	665, 1097
StyD4I	CCNGG	1 cut(s)	906
StyI	CCWWGG	3 cut(s)	24, 312, 819
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	9 cut(s)	356, 437, 497, 506, 656, 767, 974, 993, 1064
TasI	AATT	2 cut(s)	665, 1097
TauI	GCSGC	9 cut(s)	44, 169, 194, 197, 200, 331, 334, 403, 414
TfiI	GAWTC	5 cut(s)	116, 185, 239, 251, 491
TseFI	GTSAC	2 cut(s)	18, 322
TseI	GCWGC	4 cut(s)	86, 365, 1036, 1073
Tsp45I	GTSAC	2 cut(s)	18, 322
TspDTI	ATGAA	6 cut(s)	39, 549, 578, 704, 759, 899
TspGWI	ACGGA	2 cut(s)	245, 824
XceI	RCATGY	2 cut(s)	290, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.