Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

24777184 .. 24778032

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCAAAGAAGCATCTCAAGCCGTTGGAGACATGTTTTGAAGATGAAGAAGATGATGTTATTTATCTTCCTCCAGGTCTTGTGACCGGTGCAACTTCCAAGAAGAATGAGGAGTTTTGTGGCGGCTCCGGCAAGGTACAACCGTCTGAGATGAAGCGTCGGAGTGAAGGGACCTCAACGGACATGACTTCGAAGAGAGCCAAGAAGGTTTCAGCAGAAGATGAGAAGAAAGTTGGAGAATGGACAAAAAACCCATATTTTCAAAGACTGTGGAGTGAGGAAGATGAGATTGTTATGCTACAAGGAATTATTAAATTTGAAGATGTTACAGGGAAAAGTCCGTTTGAGGATAGACACGGGTTTATAGAATTCGTCAAGAACTCCATTAGCTTCGAGGCTAGTGTGCAACAATACATTGGCAAGATTAGCCAATTGAAGAGGAAATATACGAGGAAAAGGAAGAACGGTTTTTCTGAAGGTCATGAACAGAAATGTTTCAAACTGGCCATGTCTATTTGGGGAACTAAAGAAACGTCTAAGAAGACGGACTTGTGCTCTTCACCTAAAGGTAAAAAAGTTAAAGAAGAAGATGGAGATGTGACAAACTCTGATTGGTTTGAGAATTCGTTTCTACTTCCATCAATTGAGAGTCTTGGTGTGGATTCGGTTAAACGTAAATGGAATGTTGTGCCTATGGAGTTTAAGAAGAAAATTGAAGAGAGGTTGGAGTTGTTGGAGGCTGATGAAAGTGAATGCAAGAAAATGGAAGAGATGTTGAAGGTTAAAAATAGCGAATGCGTGAAACAAAAGACTAACCTTTTGAATGAGGTGATCGATGTGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

282

Amino Acids

32.41

Weight (kDa)

6.87

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	87 - 174	2.9e-29	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	204 - 251	4e-15	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	314, 368, 622
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	32
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	8 cut(s)	41, 263, 320, 436, 499, 716, 778, 823
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	314, 368, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	552, 841
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BalI	TGGCCA	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	557
BccI	CCATC	2 cut(s)	584, 646
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	127, 172
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	834
BsaWI	WCCGGW	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	834
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	506
BshTI	ACCGGT	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	87, 129
BslFI	GGGAC	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	2 cut(s)	758, 800
BsnI	GGCC	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	1 cut(s)	831
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	834
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	127, 172
BspQI	GCTCTTC	1 cut(s)	562
BspT104I	TTCGAA	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	144, 270, 467
Bst6I	CTCTTC	5 cut(s)	188, 431, 562, 711, 762
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	147, 537
BstKTI	GATC	1 cut(s)	834
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	831
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 129, 426
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	834
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviAII	CATG	4 cut(s)	33, 184, 482, 508
CviJI	RGCY	8 cut(s)	22, 126, 200, 390, 398, 429, 506, 740
CviKI_1	RGCY	8 cut(s)	22, 126, 200, 390, 398, 429, 506, 740
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	2 cut(s)	147, 537
DpnI	GATC	1 cut(s)	833
DpnII	GATC	1 cut(s)	831
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	5 cut(s)	188, 431, 562, 711, 762
EarI	CTCTTC	5 cut(s)	188, 431, 562, 711, 762
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRI	GAATTC	2 cut(s)	368, 622
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	4 cut(s)	36, 187, 485, 511
FaiI	YATR	9 cut(s)	34, 185, 256, 296, 365, 447, 483, 509, 695
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	32, 183, 481, 507
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	2 cut(s)	87, 129
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	4 cut(s)	36, 187, 485, 511
HinfI	GANTC	2 cut(s)	649, 662
HpaII	CCGG	2 cut(s)	87, 129
HphI	GGTGA	2 cut(s)	552, 841
Hpy188I	TCNGA	4 cut(s)	148, 162, 475, 610
Hpy188III	TCNNGA	2 cut(s)	376, 482
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	4 cut(s)	161, 199, 470, 772
HpyCH4III	ACNGT	3 cut(s)	144, 270, 467
HpyCH4IV	ACGT	2 cut(s)	533, 673
HpyCH4V	TGCA	3 cut(s)	92, 406, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 129, 426
HpyF3I	CTNAG	2 cut(s)	147, 537
HpySE526I	ACGT	2 cut(s)	533, 673
Hsp92II	CATG	4 cut(s)	36, 187, 485, 511
Kzo9I	GATC	1 cut(s)	831
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	6 cut(s)	60, 87, 100, 142, 315, 488
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	533, 673
MaeIII	GTNAC	3 cut(s)	82, 325, 598
MalI	GATC	1 cut(s)	833
MboI	GATC	1 cut(s)	831
MfeI	CAATTG	2 cut(s)	431, 642
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	7 cut(s)	306, 314, 368, 431, 622, 642, 711
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	5 cut(s)	6, 140, 214, 705, 714
Mox20I	TGGCCA	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	5 cut(s)	312, 579, 669, 702, 783
Msp20I	TGGCCA	1 cut(s)	506
MspI	CCGG	2 cut(s)	87, 129
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	2 cut(s)	431, 642
Mva1269I	GAATGC	2 cut(s)	758, 800
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	19, 129, 426
NdeII	GATC	1 cut(s)	831
NlaIII	CATG	4 cut(s)	36, 187, 485, 511
NlaIV	GGNNCC	2 cut(s)	127, 172
NmuCI	GTSAC	2 cut(s)	82, 598
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	191
PagI	TCATGA	1 cut(s)	481
PciI	ACATGT	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	562
PctI	GAATGC	2 cut(s)	758, 800
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	662
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	171
PscI	ACATGT	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	127, 172
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	312, 579, 669, 702, 783
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	831
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	7 cut(s)	306, 314, 368, 431, 622, 642, 711
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	144, 270, 467
TaiI	ACGT	2 cut(s)	536, 676
TaqI	TCGA	3 cut(s)	191, 393, 834
TasI	AATT	7 cut(s)	306, 314, 368, 431, 622, 642, 711
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	5 cut(s)	312, 579, 669, 702, 783
Tru9I	TTAA	5 cut(s)	312, 579, 669, 702, 783
TseFI	GTSAC	2 cut(s)	82, 598
Tsp45I	GTSAC	2 cut(s)	82, 598
TspDTI	ATGAA	4 cut(s)	60, 167, 498, 759
TspGWI	ACGGA	3 cut(s)	194, 330, 560
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	3 cut(s)	314, 368, 622
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.