Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

256957 .. 257943

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTTCGGTGCAAAACCTTAAAACTGACCAACTTCTCAATTTTTTATTTAAAAACCCTACCAAATTTCTCTCTCGTTTCTCTCCGATGGCCAAGAACAAGACTTTGGTTACTCCATCAACGGTGAAGAAGTCATCTGACGTCGCATCTACGTCAAAGAAACTGTCGGGAGTCGCATCTCCAGCGAAGAAACCGTCGGGTGTCACATCTCCGGTCAAGAAGCCGTTGGAAGCCGTCGCATCAACTTCATCTGAGGAGGAGGAGGAAGATGAGCCTTCCAGCGATTCAGAGTCGGGATCGGAGAGTGAGTCTGACACTGAAGCTGAGCCGATGACTCTTGCTGCTGCTGCTCCTTCTTCTTCGAATGAGAAGAGACAAAGTGAAGGAAAACCAGAGGAGGAACGAGCCAAGACTGAAACAGAGACGGGGAAGAAGCCACTGTTGTTTCAGAGATTGTGGACTGATGAAGACGAGATCGTCTTTCTTCAAGGAATGATCAAATTTGCTAAGGATACAGGTAAGAATGTTTCCGAGGACATGAATGGCTTTTTCGAAAAACTTAAAGATTCGATTAGCTTTGAGGTGAAGACTGATCAGTTCGTTAACAAAATCCGGTCTATGAAGAGAAAGTATATTGAGAACAAGAAAACTACTACAGAGCATGATAAGAAGTGTTACGAATTGGCTGAGATAATTTGGGTAAGTGATGGTGATGCTACTGCTCTTGTGAAGCCAAAGAAGAAGAAGCTTAAGGTTGATGAAGAAAGTGATTGGTTCGAGAGGTCGTTTGTTGATGGTGCGTTTAAAGAATTGGGTCCGGGGGTTGATGAAGAGACATGGAAGAAGAATTGGAGTTTGGTACCGGTGAAGAAGAGGAAGAGGATAGAAGAAAAGGTGAAGTCCATGCAAGCTGATGAGCTCAAAACGACGTGGCAGAAGATTGACGTTGTGCATGAGATGAGATCTTTGATGGCTAAATATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

328

Amino Acids

37.06

Weight (kDa)

6.83

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	149 - 233	2.2e-26	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	257 - 326	2.5e-27	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
AatII	GACGTC	1 cut(s)	144
Acc65I	GGTACC	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	859
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	65, 500
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	861
AflII	CTTAAG	1 cut(s)	749
AgeI	ACCGGT	1 cut(s)	862
AgsI	TTSAA	1 cut(s)	488
AjiI	CACGTC	1 cut(s)	930
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 839, 871
AluBI	AGCT	5 cut(s)	323, 576, 748, 911, 919
AluI	AGCT	5 cut(s)	323, 576, 748, 911, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	3 cut(s)	367, 416, 827
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	341, 344, 347
ApoI	RAATTY	2 cut(s)	65, 500
ArsI	GACNNNNNNTTYG	4 cut(s)	149, 179, 181, 211
AsiGI	ACCGGT	1 cut(s)	862
Asp718I	GGTACC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	815
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	5 cut(s)	136, 595, 722, 877, 907
AsuII	TTCGAA	2 cut(s)	362, 552
AvaII	GGWCC	1 cut(s)	815
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	921
BbsI	GAAGAC	2 cut(s)	474, 593
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	3 cut(s)	328, 331, 334
BccI	CCATC	5 cut(s)	82, 124, 701, 788, 964
BceAI	ACGGC	2 cut(s)	208, 218
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	2 cut(s)	495, 592
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	3 cut(s)	367, 416, 827
BfmI	CTRYAG	1 cut(s)	654
BfrI	CTTAAG	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	962
BisI	GCNGC	3 cut(s)	342, 345, 348
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	3 cut(s)	343, 346, 349
Bme1390I	CCNGG	1 cut(s)	819
Bme18I	GGWCC	1 cut(s)	815
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	2 cut(s)	816, 861
BmrFI	CCNGG	1 cut(s)	819
BmsI	GCATC	4 cut(s)	155, 185, 248, 703
BpiI	GAAGAC	2 cut(s)	474, 593
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	2 cut(s)	362, 552
BpuMI	CCSGG	1 cut(s)	819
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	531, 818
BsaWI	WCCGGW	3 cut(s)	211, 612, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bse118I	RCCGGY	1 cut(s)	862
BseDI	CCNNGG	2 cut(s)	531, 818
BseMII	CTCAG	3 cut(s)	243, 315, 678
BseRI	GAGGAG	4 cut(s)	269, 272, 275, 410
BseXI	GCAGC	3 cut(s)	328, 331, 334
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	859
BshTI	ACCGGT	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	921
BsiSI	CCGG	4 cut(s)	212, 613, 818, 863
BsmAI	GTCTC	3 cut(s)	367, 416, 827
BsmBI	CGTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	2 cut(s)	362, 552
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	5 cut(s)	296, 474, 495, 592, 962
Bsp1720I	GCTNAGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	244, 316, 679
BspLI	GGNNCC	2 cut(s)	816, 861
BspPI	GGATC	1 cut(s)	304
BspT104I	TTCGAA	2 cut(s)	362, 552
BspT107I	GGYRCC	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	862
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	2 cut(s)	531, 818
BssMI	GATC	5 cut(s)	296, 474, 495, 592, 962
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	124, 165, 195, 441
Bst6I	CTCTTC	5 cut(s)	365, 617, 825, 866, 872
BstACI	GRCGYC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	749
BstBI	TTCGAA	2 cut(s)	362, 552
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	4 cut(s)	252, 324, 507, 687
BstKTI	GATC	5 cut(s)	299, 477, 498, 595, 965
BstMAI	GTCTC	3 cut(s)	367, 416, 827
BstMBI	GATC	5 cut(s)	296, 474, 495, 592, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 347
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	328, 331, 334
BstV2I	GAAGAC	2 cut(s)	474, 593
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	930
BtsIMutI	CAGTG	2 cut(s)	315, 437
Cac8I	GCNNGC	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	862
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	1 cut(s)	860
CspAI	ACCGGT	1 cut(s)	862
CviAII	CATG	5 cut(s)	538, 662, 837, 904, 953
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	4 cut(s)	252, 324, 507, 687
DpnI	GATC	5 cut(s)	298, 476, 497, 594, 964
DpnII	GATC	5 cut(s)	296, 474, 495, 592, 962
DraI	TTTAAA	2 cut(s)	52, 805
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	5 cut(s)	365, 617, 825, 866, 872
EarI	CTCTTC	5 cut(s)	365, 617, 825, 866, 872
Ecl136II	GAGCTC	1 cut(s)	919
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	921
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	5 cut(s)	541, 665, 840, 907, 956
FaiI	YATR	8 cut(s)	539, 620, 633, 663, 838, 905, 954, 981
FatI	CATG	5 cut(s)	537, 661, 836, 903, 952
FbaI	TGATCA	2 cut(s)	495, 592
Fnu4HI	GCNGC	3 cut(s)	342, 345, 348
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	3 cut(s)	342, 345, 348
GluI	GCNGC	3 cut(s)	342, 345, 348
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	4 cut(s)	212, 613, 818, 863
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	541, 665, 840, 907, 956
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	6 cut(s)	171, 284, 290, 308, 334, 566
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	4 cut(s)	212, 613, 818, 863
HphI	GGTGA	5 cut(s)	136, 595, 722, 877, 907
Hpy166II	GTNNAC	2 cut(s)	459, 604
Hpy188I	TCNGA	8 cut(s)	87, 139, 253, 289, 301, 313, 450, 532
Hpy188III	TCNNGA	4 cut(s)	168, 217, 294, 778
Hpy8I	GTNNAC	2 cut(s)	459, 604
Hpy99I	CGWCG	4 cut(s)	146, 199, 239, 931
HpyAV	CCTTC	3 cut(s)	285, 363, 377
HpyCH4III	ACNGT	4 cut(s)	124, 165, 195, 441
HpyCH4IV	ACGT	4 cut(s)	141, 152, 929, 945
HpyCH4V	TGCA	3 cut(s)	13, 907, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 347
HpyF3I	CTNAG	4 cut(s)	252, 324, 507, 687
HpySE526I	ACGT	4 cut(s)	141, 152, 929, 945
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	5 cut(s)	541, 665, 840, 907, 956
KpnI	GGTACC	1 cut(s)	863
Ksp22I	TGATCA	2 cut(s)	495, 592
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	296, 474, 495, 592, 962
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	195, 225, 292, 405, 501, 626, 831, 876
Lsp1109I	GCAGC	3 cut(s)	328, 331, 334
LweI	GCATC	4 cut(s)	155, 185, 248, 703
MaeII	ACGT	4 cut(s)	141, 152, 929, 945
MaeIII	GTNAC	3 cut(s)	109, 202, 674
MalI	GATC	5 cut(s)	298, 476, 497, 594, 964
MboI	GATC	5 cut(s)	296, 474, 495, 592, 962
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	921
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	7 cut(s)	40, 65, 500, 680, 693, 809, 847
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	4 cut(s)	180, 299, 317, 328
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	6 cut(s)	21, 51, 561, 603, 750, 804
Msp20I	TGGCCA	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	4 cut(s)	212, 613, 818, 863
MspR9I	CCNGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	2 cut(s)	182, 347
NciI	CCSGG	1 cut(s)	819
NdeII	GATC	5 cut(s)	296, 474, 495, 592, 962
NlaIII	CATG	5 cut(s)	541, 665, 840, 907, 956
NlaIV	GGNNCC	2 cut(s)	816, 861
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	2 cut(s)	362, 552
PfeI	GAWTC	2 cut(s)	284, 566
PinAI	ACCGGT	1 cut(s)	862
PkrI	GCNGC	3 cut(s)	343, 346, 349
PleI	GAGTC	4 cut(s)	179, 298, 316, 328
PpsI	GAGTC	4 cut(s)	179, 298, 316, 328
Psp124BI	GAGCTC	1 cut(s)	921
PspN4I	GGNNCC	2 cut(s)	816, 861
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	962
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	6 cut(s)	21, 51, 561, 603, 750, 804
SatI	GCNGC	3 cut(s)	342, 345, 348
Sau3AI	GATC	5 cut(s)	296, 474, 495, 592, 962
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	4 cut(s)	180, 299, 317, 328
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	4 cut(s)	155, 185, 248, 703
SfcI	CTRYAG	1 cut(s)	654
SfuI	TTCGAA	2 cut(s)	362, 552
SinI	GGWCC	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	7 cut(s)	40, 65, 500, 680, 693, 809, 847
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	817
TaaI	ACNGT	4 cut(s)	124, 165, 195, 441
TaiI	ACGT	4 cut(s)	144, 155, 932, 948
TaqI	TCGA	4 cut(s)	362, 552, 569, 777
TasI	AATT	7 cut(s)	40, 65, 500, 680, 693, 809, 847
TfiI	GAWTC	2 cut(s)	284, 566
Tru1I	TTAA	6 cut(s)	21, 51, 561, 603, 750, 804
Tru9I	TTAA	6 cut(s)	21, 51, 561, 603, 750, 804
TscAI	CASTG	2 cut(s)	322, 444
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	341, 344, 347
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	6 cut(s)	237, 480, 554, 635, 774, 843
TspRI	CASTG	2 cut(s)	322, 444
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	65, 500
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.