Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

112705 .. 113982

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTCCTTTGGAAAGTCCAGCAACCGCTTCTTCAAGCGAAGTTGAGAGTTCTTCTGAAGAGATCTTTAAGTCTTCTTCTGAAGAAAGCAAACCCAAAGATCCTGTCACAGTTCCTTCCTCTAAAACCCTAAAATCTCCTTCCGCCGCTGTGAATTCTAAGACAGATTCTTCTGATGACTCAGAGAAGCAGTCATTCGTCTTAACCAGGCGGAAGAAGAAAGAAGGTGCTGCTGAATCACCGGCGGTGAAGTCAGGGAAGAAGCGAGCTGGTGAAGGAAGCACCTCAAGGGACATGCATGTCAAAAGAGTTAAGAAAGAGGACGATAACAAAAAGGCGAATCCTCAGAGAGTATGGAGTGAAGAAGATGAGATCTCTCTTCTACAGGCAGTGATTGATTTCAAAGCTGAGACAGGTACAAGTCCTTGGGATCATAAGAATGCGTTTTTTGATATCGCCAAGAAATCTATAAGCTTTGATGTTAGTCATGTCCAGTTCTTTGACAAGATTAGAAGATTAAAGAATAAGTATTTTGTTAACCGGAAGAACAAAAGTGGTGAATCGAATCATGATAAGAAATGTTTGGGTTTGGCTGTTTTGATTTGGGGATCTGATGGTATGAACGTTGAATCTCCTGTGAAGAAAGATGAATCTATTCTTGTTAAGGGTAAGGCTAATAGCAAGGAGAAGAAGGTGGAGAAACCTTTGGTTATAGAAGATGAGCAAGTGATTCTTGGAGCAGATTCGGAGTGGTTTGAGGAGTCTTTTCTTGTTCCGGTTATCGCGAATCTCGGTTTGGATGAGTATTCTGTGAAGAAGAAGTGGAGCAAGGTGTCTCTGGAGACTAAGAAGAAGATTCAAGAGAAGATGAAGGTTGTGGACGCTAAGAAATGTGAGTTGTTGTTGGCGGAGATGGATGTTTTGAAGGATGTGACTTCGGTGCTTGCTCAAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

319

Amino Acids

35.51

Weight (kDa)

8.83

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	116 - 203	4.3e-28	Glabrous-enhancer-binding protein-like family, DBD domain
GeBP-like_C	PF22757	250 - 317	4.4e-28	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	785
AciI	CCGC	6 cut(s)	27, 144, 147, 211, 245, 908
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	3 cut(s)	95, 438, 616
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	78, 102
AfaI	GTAC	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	36, 403, 629, 860, 925
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AluBI	AGCT	3 cut(s)	269, 407, 474
AluI	AGCT	3 cut(s)	269, 407, 474
Alw26I	GTCTC	3 cut(s)	404, 836, 840
AlwI	GGATC	3 cut(s)	95, 438, 616
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
Asp700I	GAANNNNTTC	1 cut(s)	654
AsuHPI	GGTGA	4 cut(s)	231, 259, 284, 569
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	608, 907
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	404, 836, 840
BfmI	CTRYAG	1 cut(s)	383
BglII	AGATCT	2 cut(s)	63, 372
BisI	GCNGC	2 cut(s)	147, 231
BlsI	GCNGC	2 cut(s)	148, 232
Bme1390I	CCNGG	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	540, 775
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	805, 922, 934
BseMII	CTCAG	3 cut(s)	195, 359, 399
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	785
BsiSI	CCGG	3 cut(s)	242, 541, 776
BslFI	GGGAC	1 cut(s)	305
BsmAI	GTCTC	3 cut(s)	404, 836, 840
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	63, 100, 372, 430, 608
Bsp68I	TCGCGA	1 cut(s)	785
BspACI	CCGC	6 cut(s)	27, 144, 147, 211, 245, 908
BspCNI	CTCAG	3 cut(s)	194, 358, 400
BspFNI	CGCG	1 cut(s)	785
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	95, 438, 616
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	5 cut(s)	63, 100, 372, 430, 608
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	54, 384
BstC8I	GCNNGC	2 cut(s)	267, 945
BstDEI	CTNAG	6 cut(s)	159, 181, 345, 408, 846, 885
BstF5I	GGATG	3 cut(s)	805, 922, 934
BstFNI	CGCG	1 cut(s)	785
BstKTI	GATC	5 cut(s)	66, 103, 375, 433, 611
BstMAI	GTCTC	3 cut(s)	404, 836, 840
BstMBI	GATC	5 cut(s)	63, 100, 372, 430, 608
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	2 cut(s)	298, 302
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	383
BstUI	CGCG	1 cut(s)	785
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	4 cut(s)	63, 100, 372, 608
BstYI	RGATCY	4 cut(s)	63, 100, 372, 608
BtsCI	GGATG	3 cut(s)	805, 922, 934
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
BtuMI	TCGCGA	1 cut(s)	785
Cac8I	GCNNGC	2 cut(s)	267, 945
CciI	TCATGA	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	4 cut(s)	295, 299, 488, 569
CviJI	RGCY	6 cut(s)	5, 269, 407, 474, 593, 674
CviKI_1	RGCY	6 cut(s)	5, 269, 407, 474, 593, 674
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	6 cut(s)	159, 181, 345, 408, 846, 885
DpnI	GATC	5 cut(s)	65, 102, 374, 432, 610
DpnII	GATC	5 cut(s)	63, 100, 372, 430, 608
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	54, 384
EarI	CTCTTC	2 cut(s)	54, 384
EciI	GGCGGA	3 cut(s)	133, 226, 923
Eco130I	CCWWGG	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	78, 102
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	425
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	4 cut(s)	298, 302, 491, 572
FaiI	YATR	9 cut(s)	296, 300, 355, 435, 470, 489, 570, 620, 713
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	4 cut(s)	294, 298, 487, 568
Fnu4HI	GCNGC	2 cut(s)	147, 231
FokI	GGATG	3 cut(s)	812, 929, 941
Fsp4HI	GCNGC	2 cut(s)	147, 231
GluI	GCNGC	2 cut(s)	147, 231
GsuI	CTGGAG	1 cut(s)	860
HapII	CCGG	3 cut(s)	242, 541, 776
HgaI	GACGC	1 cut(s)	890
Hin1II	CATG	4 cut(s)	298, 302, 491, 572
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	472
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	3 cut(s)	242, 541, 776
HphI	GGTGA	4 cut(s)	231, 259, 284, 569
Hpy166II	GTNNAC	2 cut(s)	538, 880
Hpy188I	TCNGA	7 cut(s)	58, 82, 175, 184, 348, 613, 748
Hpy188III	TCNNGA	4 cut(s)	569, 784, 839, 860
Hpy8I	GTNNAC	2 cut(s)	538, 880
HpyAV	CCTTC	7 cut(s)	126, 150, 218, 269, 685, 865, 919
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	1 cut(s)	298
HpyF3I	CTNAG	6 cut(s)	159, 181, 345, 408, 846, 885
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	4 cut(s)	298, 302, 491, 572
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	63, 100, 372, 430, 608
LmnI	GCTCC	3 cut(s)	10, 737, 825
Lsp1109I	GCAGC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	106, 931
MalI	GATC	5 cut(s)	65, 102, 374, 432, 610
MboI	GATC	5 cut(s)	63, 100, 372, 430, 608
MflI	RGATCY	4 cut(s)	63, 100, 372, 608
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	173, 770
MnlI	CCTC	5 cut(s)	130, 295, 313, 354, 751
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	6 cut(s)	69, 203, 312, 518, 537, 663
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	3 cut(s)	242, 541, 776
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	785
NdeII	GATC	5 cut(s)	63, 100, 372, 430, 608
NlaIII	CATG	4 cut(s)	298, 302, 491, 572
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	106, 931
NruI	TCGCGA	1 cut(s)	785
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	2 cut(s)	298, 302
PagI	TCATGA	1 cut(s)	568
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	148, 232
PleI	GAGTC	2 cut(s)	173, 769
PpsI	GAGTC	2 cut(s)	173, 769
Psp1406I	AACGTT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	4 cut(s)	63, 100, 372, 608
RruI	TCGCGA	1 cut(s)	785
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	6 cut(s)	69, 203, 312, 518, 537, 663
SatI	GCNGC	2 cut(s)	147, 231
Sau3AI	GATC	5 cut(s)	63, 100, 372, 430, 608
SchI	GAGTC	2 cut(s)	173, 770
ScrFI	CCNGG	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	383
SgrAI	CRCCGGYG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	6 cut(s)	27, 144, 147, 211, 245, 908
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	563
TasI	AATT	1 cut(s)	154
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	6 cut(s)	69, 203, 312, 518, 537, 663
Tru9I	TTAA	6 cut(s)	69, 203, 312, 518, 537, 663
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	106, 931
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	2 cut(s)	106, 931
TspDTI	ATGAA	3 cut(s)	635, 663, 884
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	298, 302
XmnI	GAANNNNTTC	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.