Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Forward (+)

10914511 .. 10916216

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTGACTCCGAAGCAGATCGATTTCTCTTCCTGTGGTGGTGGTGATAACTCCGACGATACCCTCTCCCATCGAGAATCTCCACGGAATCCTTCCTCAAAGCGTGCTGCTGCTTCCTTCGCAGCAGAAGCAGGCGAAGAGACTATGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATTTGGGTCCGCCGTTGATCGTCCGGATCTGGAACGAGGAAGATGAGCTCTCTATCTTAAAGGGATTAGTTGATTACAGAGCTAAGACAGGATTCAATCCCAAAATTGATTGGGATGCGTTTTACAGTTTCCTCGGAAGTTCTATCGTTGCGAAATTCTCCAAGGAGCAGGTTTTGAGTAAGATCAGGAAGTTGAAAAGGAGATTTCATGTTCATTGGGAGAAAATCAGTGAAGGGAATGATCCGAAATTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCGATGATTTGGGGACAAGGTGAATTTGGTAATGATGATGGTATGGATAAGGAGATGGTGAAGGAGCACGATGTAAACGGAAATGGCGCAGCTGAAAATGGGACTGCTCGAATAGCACAGGAGAACGAGAGTGGGGAGGAGATGTTAAAGGAGCATGAGGAAACGTTAAATGAGAATGGTGCAGAGGAGATAAGAGACAACGACGAGACTGCTCGGAAAGCACAGCAGCTCGAGAGCGAGAGCGAGGAGGAGATGTTGAAGGAGCATGAGGAACCCTTTAATGAGAATGGTGCAGAGAATATAAGAGACAATAACGGGACTACTCAAATAGCACAGCAGAGCGAGAGCGAGAGTGAGGAGATGTTGAAGGAGCATGAGGAAGTGGCTAATACTGAACTTGTAAATGAGAATGGGGCAGCGAAAACAACAGAGAACGGGACTACTGGTGGAAAAGAGAGACATGATGACGATGATGATGATGAGTTATGCGCTGTGCAGGATGCATTTGAGGCTGTAATGTCGCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGAAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAGAAGATTGAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0035326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

386

Amino Acids

43.35

Weight (kDa)

4.9

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	66 - 159	3.7e-29	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	334
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	2 cut(s)	185, 1128
AclI	AACGTT	1 cut(s)	626
AclWI	GGATC	2 cut(s)	209, 410
AcsI	RAATTY	4 cut(s)	175, 329, 422, 485
AcuI	CTGAAG	1 cut(s)	465
AgsI	TTSAA	5 cut(s)	271, 370, 721, 829, 1105
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	9 cut(s)	223, 257, 554, 691, 1018, 1027, 1117, 1135, 1148
AluI	AGCT	9 cut(s)	223, 257, 554, 691, 1018, 1027, 1117, 1135, 1148
Alw21I	GWGCWC	2 cut(s)	225, 531
Alw26I	GTCTC	5 cut(s)	134, 651, 662, 762, 913
AlwI	GGATC	2 cut(s)	209, 410
Ama87I	CYCGRG	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	198
ApeKI	GCWGC	8 cut(s)	107, 110, 122, 551, 688, 878, 1015, 1145
ApoI	RAATTY	4 cut(s)	175, 329, 422, 485
AspLEI	GCGC	2 cut(s)	551, 953
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	16, 56, 494, 532
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	225, 531
BbvI	GCAGC	8 cut(s)	94, 97, 134, 563, 700, 890, 1027, 1157
BccI	CCATC	3 cut(s)	78, 494, 511
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BcoDI	GTCTC	5 cut(s)	134, 651, 662, 762, 913
BfaI	CTAG	2 cut(s)	429, 435
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	8 cut(s)	108, 111, 123, 552, 689, 879, 1016, 1146
BlsI	GCNGC	8 cut(s)	109, 112, 124, 553, 690, 880, 1017, 1147
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	183, 735
BmsI	GCATC	2 cut(s)	280, 952
BpuEI	CTTGAG	1 cut(s)	1040
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	83, 307, 336, 1036
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 701, 731
Bse1I	ACTGG	2 cut(s)	910, 1048
BseAI	TCCGGA	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	83, 307, 336, 1036
BseGI	GGATG	2 cut(s)	295, 967
BseNI	ACTGG	2 cut(s)	910, 1048
BseRI	GAGGAG	5 cut(s)	614, 662, 722, 725, 833
BseXI	GCAGC	8 cut(s)	94, 97, 134, 563, 700, 890, 1027, 1157
BsgI	GTGCAG	3 cut(s)	663, 774, 977
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	225, 531
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	4 cut(s)	489, 577, 793, 913
BsmAI	GTCTC	5 cut(s)	134, 651, 662, 762, 913
BsmFI	GGGAC	4 cut(s)	489, 577, 793, 913
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	225, 531
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	18, 192, 201, 357, 415
BspACI	CCGC	2 cut(s)	185, 1128
BspDI	ATCGAT	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	183, 735
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	209, 410
BsrI	ACTGG	2 cut(s)	910, 1048
BssECI	CCNNGG	4 cut(s)	83, 307, 336, 1036
BssMI	GATC	5 cut(s)	18, 192, 201, 357, 415
BssT1I	CCWWGG	2 cut(s)	336, 1036
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	3 cut(s)	34, 132, 1048
BstC8I	GCNNGC	3 cut(s)	105, 133, 1137
BstDEI	CTNAG	2 cut(s)	258, 1118
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	295, 967
BstHHI	GCGC	2 cut(s)	551, 953
BstKTI	GATC	5 cut(s)	21, 195, 204, 360, 418
BstMAI	GTCTC	5 cut(s)	134, 651, 662, 762, 913
BstMBI	GATC	5 cut(s)	18, 192, 201, 357, 415
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 128, 575, 680, 971, 1024, 1136, 1145
BstV1I	GCAGC	8 cut(s)	94, 97, 134, 563, 700, 890, 1027, 1157
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	295, 967
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	105, 133, 1137
CfoI	GCGC	2 cut(s)	551, 953
Cfr13I	GGNCC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	5 cut(s)	383, 617, 728, 836, 923
DdeI	CTNAG	2 cut(s)	258, 1118
DpnI	GATC	5 cut(s)	20, 194, 203, 359, 417
DpnII	GATC	5 cut(s)	18, 192, 201, 357, 415
Eam1104I	CTCTTC	3 cut(s)	34, 132, 1048
EarI	CTCTTC	3 cut(s)	34, 132, 1048
EciI	GGCGGA	2 cut(s)	174, 1117
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	336, 1036
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	336, 1036
EcoT22I	ATGCAT	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	336, 1036
FaeI	CATG	5 cut(s)	386, 620, 731, 839, 926
FaqI	GGGAC	4 cut(s)	489, 577, 793, 913
FatI	CATG	5 cut(s)	382, 616, 727, 835, 922
Fnu4HI	GCNGC	8 cut(s)	108, 111, 123, 552, 689, 879, 1016, 1146
FokI	GGATG	2 cut(s)	302, 974
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	8 cut(s)	108, 111, 123, 552, 689, 879, 1016, 1146
FspBI	CTAG	2 cut(s)	429, 435
GlaI	GCGC	2 cut(s)	550, 952
GluI	GCNGC	8 cut(s)	108, 111, 123, 552, 689, 879, 1016, 1146
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	2 cut(s)	551, 953
Hin1II	CATG	5 cut(s)	386, 620, 731, 839, 926
Hin6I	GCGC	2 cut(s)	549, 951
HinP1I	GCGC	2 cut(s)	549, 951
HindIII	AAGCTT	2 cut(s)	1115, 1133
HinfI	GANTC	5 cut(s)	7, 77, 88, 267, 440
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	4 cut(s)	16, 56, 494, 532
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	6 cut(s)	12, 55, 311, 420, 445, 678
Hpy188III	TCNNGA	6 cut(s)	74, 199, 205, 361, 694, 1111
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	2 cut(s)	59, 668
HpyAV	CCTTC	6 cut(s)	102, 127, 401, 517, 715, 823
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	6 cut(s)	644, 755, 958, 965, 1015, 1139
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 128, 575, 680, 971, 1024, 1136, 1145
HpyF3I	CTNAG	2 cut(s)	258, 1118
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	5 cut(s)	386, 620, 731, 839, 926
HspAI	GCGC	2 cut(s)	549, 951
Kpn2I	TCCGGA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	18, 192, 201, 357, 415
LmnI	GCTCC	5 cut(s)	340, 526, 613, 724, 832
Lsp1109I	GCAGC	8 cut(s)	94, 97, 134, 563, 700, 890, 1027, 1157
LweI	GCATC	2 cut(s)	280, 952
MaeI	CTAG	2 cut(s)	429, 435
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	20, 194, 203, 359, 417
MboI	GATC	5 cut(s)	18, 192, 201, 357, 415
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	225, 531
MluCI	AATT	5 cut(s)	175, 279, 329, 422, 485
MmeI	TCCRAC	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	967
MroI	TCCGGA	1 cut(s)	198
MseI	TTAA	5 cut(s)	233, 608, 629, 741, 992
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	8 cut(s)	119, 128, 575, 680, 971, 1024, 1136, 1145
NdeII	GATC	5 cut(s)	18, 192, 201, 357, 415
NlaIII	CATG	5 cut(s)	386, 620, 731, 839, 926
NlaIV	GGNNCC	2 cut(s)	183, 735
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	967
PaeR7I	CTCGAG	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	77, 88, 267, 440
PkrI	GCNGC	8 cut(s)	109, 112, 124, 553, 690, 880, 1017, 1147
Psp124BI	GAGCTC	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	183, 735
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	233, 608, 629, 741, 992
SatI	GCNGC	8 cut(s)	108, 111, 123, 552, 689, 879, 1016, 1146
Sau3AI	GATC	5 cut(s)	18, 192, 201, 357, 415
Sau96I	GGNCC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	225, 531
SfaNI	GCATC	2 cut(s)	280, 952
Sfr274I	CTCGAG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	692, 1019
SmoI	CTYRAG	2 cut(s)	692, 1019
Sse9I	AATT	5 cut(s)	175, 279, 329, 422, 485
SsiI	CCGC	2 cut(s)	185, 1128
SspMI	CTAG	2 cut(s)	429, 435
SstI	GAGCTC	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	336, 1036
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	5 cut(s)	21, 73, 464, 571, 693
TasI	AATT	5 cut(s)	175, 279, 329, 422, 485
TfiI	GAWTC	4 cut(s)	77, 88, 267, 440
Tru1I	TTAA	5 cut(s)	233, 608, 629, 741, 992
Tru9I	TTAA	5 cut(s)	233, 608, 629, 741, 992
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	8 cut(s)	107, 110, 122, 551, 688, 878, 1015, 1145
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	5 cut(s)	161, 371, 377, 1046, 1083
TspGWI	ACGGA	2 cut(s)	100, 555
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	4 cut(s)	175, 329, 422, 485
XhoI	CTCGAG	1 cut(s)	692
XspI	CTAG	2 cut(s)	429, 435
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.