AT1G15150

Mate efflux family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5212475 .. 5215042
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15150.1

Sequence Viewer

Length: 1464 bp
ATGCAAGACGCGGAGAGAACCACCAATGATCCGGTAGACAGAATTGAGAAAGTGACATGGAGAGATCTGCAAGACGGATCTTTCACCGCAGAACTCAAGAGGCTTATCTGCTTTGCGGCTCCTATGGCTGCCGTGGTTATCATTCAGTTCATGATACAGATAATCTCAATGGTGATGGTGGGTCACCTCGGTAGACTCTCCCTCGCTAGCGCTTCCTTCGCAGTCTCCTTCTGTAACGTCACTGGCTTCAGCTTCATTATAGGATTGTCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATATCGGAAACTAGGTGTTCAGGCTTACACAGCTATGTTCTGTCTTACTTTAGTGTGTCTCCCTCTCTCTCTCCTATGGTTCAACATGGGAAAGCTTATTGTGATCCTTGGCCAAGACCCTGCTATTGCTCACGAAGCTGGTAGATATGCCGCTTGGCTCATCCCAGGACTGTTCGCTTACGCCGTTCTTCAGCCGCTCATTCGCTACTTCAAAAACCAGAGCTTGATCACACCTCTCCTCGTCACCTCTTCTGTTGTGTTTTGTATCCACGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCTTGGTCATATTGGAGGAGCCTTGGCTCTCAGCTTGTCATACTGGCTCTATGCCATTTTCCTTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCGCCGCTTACCATGGAGATATTCGAGGGCGTTAGAGAGTTTATCAAATATGCTCTTCCTTCTGCGGCTATGCTTTGCCTGGAGTGGTGGTCATATGAACTCATAATATTACTTTCTGGTCTGTTACCCAACCCACAGCTGGAGACTTCTGTGCTCTCTATCTGTTTCGAAACACTTTCAATAACTTATTCAATACCACTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGAGCTGGAAACTCTCGAGCAGCACATATTGTGGTCTATGCGGCAATGTCTCTTGCAGTAATGGATGCATTGATGGTGAGTATGTCTCTATTAGCCGGCAGGCATGTTTTCGGCCATGTTTTCAGCAGTGACAAGAAAACCATCGAATATGTTGCAAAGATGGCTCCGTTGGTCTCTATTTCTATCATACTGGACAGTTTACAAGGGGTTCTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATATAGGGGCTTACATAAACTTCGGAGCTTTCTATCTCTGGGGGATACCCATTGCAGCATCTTTAGCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAGCCGGTGCAGTTCTGCAGACTCTTCTGCTGGCTCTTGTCACAGGCTGCACAAACTGGAAAACCCAGGCCCGTGAAGCGAGGGAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGAGTCAGAACTTCCCATCTAA

Protein Analysis

487

Amino Acids

53.02

Weight (kDa)

6.78

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 201 1.6e-32 MatE
MatE PF01554 262 - 423 2.4e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccBSI CCGCTC 1 cut(s) 511
AccI GTMKAC 2 cut(s) 36, 193
AccII CGCG 4 cut(s) 11, 726, 728, 935
AclWI GGATC 4 cut(s) 23, 85, 412, 694
AcoI YGGCCR 2 cut(s) 424, 1081
AcuI CTGAAG 2 cut(s) 232, 488
AfaI GTAC 1 cut(s) 698
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 865
AgsI TTSAA 4 cut(s) 397, 526, 906, 918
AjnI CCWGG 3 cut(s) 478, 804, 1389
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 7 cut(s) 229, 377, 713, 863, 1023, 1059, 1147
AlwI GGATC 4 cut(s) 23, 85, 412, 694
Ama87I CYCGRG 1 cut(s) 984
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 5 cut(s) 424, 1081, 1306, 1392, 1422
ApeKI GCWGC 7 cut(s) 128, 938, 941, 989, 1210, 1268, 1371
AsiSI GCGATCGC 1 cut(s) 933
AspLEI GCGC 3 cut(s) 212, 728, 730
AspS9I GGNCC 2 cut(s) 1393, 1423
AsuHPI GGTGA 5 cut(s) 76, 176, 184, 550, 1057
AsuII TTCGAA 1 cut(s) 894
AsuNHI GCTAGC 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 984
BalI TGGCCA 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 7 cut(s) 115, 925, 953, 1001, 1222, 1280, 1358
BccI CCATC 4 cut(s) 169, 1036, 1118, 1123
BceAI ACGGC 2 cut(s) 116, 482
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 3 cut(s) 480, 806, 1391
BciVI GTATCC 2 cut(s) 590, 1251
BclI TGATCA 1 cut(s) 540
BcoDI GTCTC 7 cut(s) 229, 377, 713, 863, 1023, 1059, 1147
BfaI CTAG 4 cut(s) 207, 326, 926, 1325
BfmI CTRYAG 2 cut(s) 939, 1340
BfoI RGCGCY 1 cut(s) 213
BfuI GTATCC 2 cut(s) 590, 1251
BglII AGATCT 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 309
Bme1390I CCNGG 3 cut(s) 480, 806, 1391
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 1393, 1423
BmiI GGNNCC 3 cut(s) 120, 640, 1134
BmrFI CCNGG 3 cut(s) 480, 806, 1391
BmsI GCATC 3 cut(s) 1024, 1190, 1280
BmtI GCTAGC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 1039, 1071
BpmI CTGGAG 2 cut(s) 827, 887
Bpu1102I GCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 1147
BsaJI CCNNGG 8 cut(s) 132, 187, 421, 478, 642, 682, 738, 1389
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 865
Bse118I RCCGGY 2 cut(s) 1064, 1328
Bse1I ACTGG 4 cut(s) 247, 668, 1164, 1385
Bse3DI GCAATG 2 cut(s) 1020, 1263
BseBI CCWGG 3 cut(s) 480, 806, 1391
BseDI CCNNGG 8 cut(s) 132, 187, 421, 478, 642, 682, 738, 1389
BseGI GGATG 3 cut(s) 474, 1039, 1205
BseLI CCNNNNNNNGG 1 cut(s) 865
BseMI GCAATG 2 cut(s) 1020, 1263
BseMII CTCAG 3 cut(s) 664, 708, 1197
BseNI ACTGG 4 cut(s) 247, 668, 1164, 1385
BsePI GCGCGC 1 cut(s) 726
BseRI GAGGAG 3 cut(s) 542, 651, 694
BseXI GCAGC 7 cut(s) 115, 925, 953, 1001, 1222, 1280, 1358
BsgI GTGCAG 2 cut(s) 1353, 1357
Bsh1236I CGCG 4 cut(s) 11, 726, 728, 935
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 5 cut(s) 426, 1083, 1308, 1394, 1424
BsiEI CGRYCG 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 3 cut(s) 32, 1065, 1329
BslI CCNNNNNNNGG 1 cut(s) 865
BsmAI GTCTC 7 cut(s) 229, 377, 713, 863, 1023, 1059, 1147
BsnI GGCC 5 cut(s) 426, 1083, 1308, 1394, 1424
Bso31I GGTCTC 1 cut(s) 1147
BsoBI CYCGRG 1 cut(s) 984
Bsp119I TTCGAA 1 cut(s) 894
Bsp1286I GDGCHC 1 cut(s) 882
Bsp143I GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 738
BspANI GGCC 5 cut(s) 426, 1083, 1308, 1394, 1424
BspCNI CTCAG 3 cut(s) 663, 709, 1196
BspFNI CGCG 4 cut(s) 11, 726, 728, 935
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 120, 640, 1134
BspMAI CTGCAG 2 cut(s) 943, 1344
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 4 cut(s) 23, 85, 412, 694
BspQI GCTCTTC 1 cut(s) 786
BspT104I TTCGAA 1 cut(s) 894
BspTNI GGTCTC 1 cut(s) 1147
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 1020, 1263
BsrFI RCCGGY 2 cut(s) 1064, 1328
BsrI ACTGG 4 cut(s) 247, 668, 1164, 1385
BssAI RCCGGY 2 cut(s) 1064, 1328
BssECI CCNNGG 8 cut(s) 132, 187, 421, 478, 642, 682, 738, 1389
BssHII GCGCGC 1 cut(s) 726
BssMI GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
BssT1I CCWWGG 4 cut(s) 421, 642, 682, 738
Bst2UI CCWGG 3 cut(s) 480, 806, 1391
Bst4CI ACNGT 2 cut(s) 486, 1166
Bst6I CTCTTC 3 cut(s) 568, 786, 1353
BstBI TTCGAA 1 cut(s) 894
BstC8I GCNNGC 8 cut(s) 208, 599, 728, 946, 1066, 1070, 1195, 1356
BstDEI CTNAG 5 cut(s) 277, 309, 650, 717, 1183
BstDSI CCRYGG 2 cut(s) 132, 738
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 3 cut(s) 474, 1039, 1205
BstFNI CGCG 4 cut(s) 11, 726, 728, 935
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 212, 728, 730
BstKTI GATC 7 cut(s) 31, 67, 80, 420, 543, 689, 933
BstMAI GTCTC 7 cut(s) 229, 377, 713, 863, 1023, 1059, 1147
BstMBI GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
BstMCI CGRYCG 1 cut(s) 933
BstNI CCWGG 3 cut(s) 480, 806, 1391
BstNSI RCATGY 1 cut(s) 1076
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 478, 804, 1389
BstSFI CTRYAG 2 cut(s) 939, 1340
BstUI CGCG 4 cut(s) 11, 726, 728, 935
BstV1I GCAGC 7 cut(s) 115, 925, 953, 1001, 1222, 1280, 1358
BstX2I RGATCY 3 cut(s) 64, 77, 686
BstYI RGATCY 3 cut(s) 64, 77, 686
BsuI GTATCC 2 cut(s) 590, 1251
BsuRI GGCC 5 cut(s) 426, 1083, 1308, 1394, 1424
BtgI CCRYGG 2 cut(s) 132, 738
BtsCI GGATG 3 cut(s) 474, 1039, 1205
BtsI GCAGTG 1 cut(s) 1102
BtsIMutI CAGTG 2 cut(s) 240, 1102
Cac8I GCNNGC 8 cut(s) 208, 599, 728, 946, 1066, 1070, 1195, 1356
CciI TCATGA 1 cut(s) 150
CfoI GCGC 3 cut(s) 212, 728, 730
Cfr10I RCCGGY 2 cut(s) 1064, 1328
Cfr13I GGNCC 2 cut(s) 1393, 1423
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 697
CviAII CATG 9 cut(s) 57, 151, 270, 400, 694, 739, 1073, 1085, 1427
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 5 cut(s) 277, 309, 650, 717, 1183
DpnI GATC 7 cut(s) 30, 66, 79, 419, 542, 688, 932
DpnII GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
EaeI YGGCCR 2 cut(s) 424, 1081
Eam1104I CTCTTC 3 cut(s) 568, 786, 1353
EarI CTCTTC 3 cut(s) 568, 786, 1353
Eco130I CCWWGG 4 cut(s) 421, 642, 682, 738
Eco31I GGTCTC 1 cut(s) 1147
Eco47III AGCGCT 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 232, 488
Eco88I CYCGRG 1 cut(s) 984
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 478, 804, 1389
EcoT14I CCWWGG 4 cut(s) 421, 642, 682, 738
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 4 cut(s) 421, 642, 682, 738
FaeI CATG 9 cut(s) 60, 154, 273, 403, 697, 742, 1076, 1088, 1430
FatI CATG 9 cut(s) 56, 150, 269, 399, 693, 738, 1072, 1084, 1426
FauI CCCGC 1 cut(s) 1196
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 540
FblI GTMKAC 2 cut(s) 36, 193
FokI GGATG 3 cut(s) 461, 1046, 1212
FspBI CTAG 4 cut(s) 207, 326, 926, 1325
GlaI GCGC 3 cut(s) 211, 727, 729
GsuI CTGGAG 2 cut(s) 827, 887
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 5 cut(s) 426, 1083, 1308, 1394, 1424
HapII CCGG 3 cut(s) 32, 1065, 1329
HgaI GACGC 1 cut(s) 17
HhaI GCGC 3 cut(s) 212, 728, 730
Hin1II CATG 9 cut(s) 60, 154, 273, 403, 697, 742, 1076, 1088, 1430
Hin6I GCGC 3 cut(s) 210, 726, 728
HinP1I GCGC 3 cut(s) 210, 726, 728
HindIII AAGCTT 2 cut(s) 297, 407
HinfI GANTC 5 cut(s) 195, 954, 1345, 1430, 1445
HpaII CCGG 3 cut(s) 32, 1065, 1329
HphI GGTGA 5 cut(s) 76, 176, 184, 550, 1057
Hpy166II GTNNAC 3 cut(s) 37, 194, 1169
Hpy188I TCNGA 6 cut(s) 321, 718, 1238, 1296, 1435, 1450
Hpy188III TCNNGA 4 cut(s) 97, 151, 446, 984
Hpy8I GTNNAC 3 cut(s) 37, 194, 1169
HpyAV CCTTC 4 cut(s) 226, 238, 795, 1291
HpyCH4III ACNGT 2 cut(s) 486, 1166
HpyCH4IV ACGT 2 cut(s) 237, 585
HpyF3I CTNAG 5 cut(s) 277, 309, 650, 717, 1183
HpySE526I ACGT 2 cut(s) 237, 585
Hsp92II CATG 9 cut(s) 60, 154, 273, 403, 697, 742, 1076, 1088, 1430
HspAI GCGC 3 cut(s) 210, 726, 728
KroI GCCGGC 1 cut(s) 1064
KroNI GCCGGC 1 cut(s) 1066
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 7 cut(s) 124, 305, 638, 971, 1138, 1238, 1408
Lsp1109I GCAGC 7 cut(s) 115, 925, 953, 1001, 1222, 1280, 1358
LweI GCATC 3 cut(s) 1024, 1190, 1280
MaeI CTAG 4 cut(s) 207, 326, 926, 1325
MaeII ACGT 2 cut(s) 237, 585
MaeIII GTNAC 8 cut(s) 52, 182, 233, 238, 556, 849, 1097, 1363
MalI GATC 7 cut(s) 30, 66, 79, 419, 542, 688, 932
MbiI CCGCTC 1 cut(s) 511
MboI GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
MboII GAAGA 4 cut(s) 494, 555, 773, 1340
MflI RGATCY 3 cut(s) 64, 77, 686
MhlI GDGCHC 1 cut(s) 882
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 189, 1339, 1454
Mox20I TGGCCA 1 cut(s) 426
Mph1103I ATGCAT 1 cut(s) 1039
MroNI GCCGGC 1 cut(s) 1064
MscI TGGCCA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 865
MspI CCGG 3 cut(s) 32, 1065, 1329
MspR9I CCNGG 3 cut(s) 480, 806, 1391
MvaI CCWGG 3 cut(s) 480, 806, 1391
MvnI CGCG 4 cut(s) 11, 726, 728, 935
NaeI GCCGGC 1 cut(s) 1066
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 820
NdeII GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
NgoMIV GCCGGC 1 cut(s) 1064
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 9 cut(s) 60, 154, 273, 403, 697, 742, 1076, 1088, 1430
NlaIV GGNNCC 3 cut(s) 120, 640, 1134
NmuCI GTSAC 6 cut(s) 52, 182, 238, 556, 1097, 1363
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1076
NspV TTCGAA 1 cut(s) 894
PaeR7I CTCGAG 1 cut(s) 984
PagI TCATGA 1 cut(s) 150
PauI GCGCGC 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PdiI GCCGGC 1 cut(s) 1066
PfeI GAWTC 2 cut(s) 954, 1430
Ple19I CGATCG 1 cut(s) 933
PleI GAGTC 3 cut(s) 189, 1339, 1453
PpsI GAGTC 3 cut(s) 189, 1339, 1453
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 478, 804, 1389
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 3 cut(s) 478, 804, 1389
PspN4I GGNNCC 3 cut(s) 120, 640, 1134
PspPI GGNCC 2 cut(s) 1393, 1423
PstI CTGCAG 2 cut(s) 943, 1344
PsuI RGATCY 3 cut(s) 64, 77, 686
PteI GCGCGC 1 cut(s) 726
PvuI CGATCG 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 865
RgaI GCGATCGC 1 cut(s) 933
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 786
Sau3AI GATC 7 cut(s) 28, 64, 77, 417, 540, 686, 930
Sau96I GGNCC 2 cut(s) 1393, 1423
SchI GAGTC 3 cut(s) 189, 1339, 1454
ScrFI CCNGG 3 cut(s) 480, 806, 1391
SduI GDGCHC 1 cut(s) 882
SfaAI GCGATCGC 1 cut(s) 933
SfaNI GCATC 3 cut(s) 1024, 1190, 1280
SfcI CTRYAG 2 cut(s) 939, 1340
Sfr274I CTCGAG 1 cut(s) 984
SfuI TTCGAA 1 cut(s) 894
SgfI GCGATCGC 1 cut(s) 933
SlaI CTCGAG 1 cut(s) 984
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 95, 984
SmoI CTYRAG 2 cut(s) 95, 984
Sse9I AATT 1 cut(s) 42
SspI AATATT 1 cut(s) 834
SspMI CTAG 4 cut(s) 207, 326, 926, 1325
StyD4I CCNGG 3 cut(s) 478, 804, 1389
StyI CCWWGG 4 cut(s) 421, 642, 682, 738
TaaI ACNGT 2 cut(s) 486, 1166
TaiI ACGT 2 cut(s) 240, 588
TaqI TCGA 4 cut(s) 750, 894, 985, 1113
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 696
TauI GCSGC 7 cut(s) 119, 467, 511, 733, 794, 938, 1013
TfiI GAWTC 2 cut(s) 954, 1430
TscAI CASTG 2 cut(s) 247, 1102
TseFI GTSAC 6 cut(s) 52, 182, 238, 556, 1097, 1363
TseI GCWGC 7 cut(s) 128, 938, 941, 989, 1210, 1268, 1371
Tsp45I GTSAC 6 cut(s) 52, 182, 238, 556, 1097, 1363
TspDTI ATGAA 6 cut(s) 139, 244, 682, 837, 1280, 1443
TspGWI ACGGA 2 cut(s) 90, 1125
TspRI CASTG 2 cut(s) 247, 1102
XceI RCATGY 1 cut(s) 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 984
XmiI GTMKAC 2 cut(s) 36, 193
XspI CTAG 4 cut(s) 207, 326, 926, 1325
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.