AT1G15160

Mate efflux family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5215345 .. 5217545
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15160.1

Sequence Viewer

Length: 1464 bp
ATGGAAGACGCAGAGAGCACCACCAAAGATCCTGTAGACAGAGTTGAGAAAGTAACATGGAGAGATCTGCAAGACGGATCTTTCACCGCAGAACTCAAGAAGCTTATATGCTTTGCGGCTCCTATGGCTGCCGTGGTTATCACTCAGTCCATGTTACAGATCATAACAATGGTGATTGTGGGTCACCTCGGCAGACTCTCTCTCGCTAGCGCTTCCTTCGCCATCTCCTTCTGTAACGTCACTGGCTTCAGCTTCATTATGGGATTGTCATGTGCCTTAGATACTCTCAGCGGTCAAGCCTATGGAGCTAAGCTATATCGGAAACTAGGTGTTCAGGCTTACACAGCTATGTTCTGTCTTACATTAGTGTGTCTCCCTCTCTCTCTCCTATGGTTCAACATGGGAAAGCTTCTCGTGATCCTTGGCCAAGACCCTTCAATTGCACACGAAGCCGGAAGATTTGCTGCTTGGCTCATCCCAGGACTGTTTGCTTACGCTGTTCTACAGCCGCTTACTCGCTACTTCAAAAACCAGAGCTTGATAACACCTCTCCTTATCACCTCTTGTGTTGTGTTCTGTCTCCATGTTCCTCTTTGTTGGCTTTTGGTTTATAAGTCAGGGCTTGATCATATTGGAGGAGCCTTGGCTCTCAGTTTGTCATACTGGCTCTATGCCATCTTTCTTGGATCTTTCATGTACTTCTCCTCTGCTTGTTCTGAGACACGTGCACCGCTTACCATGGAGATATTCGAGGGCGTTAGAGAGTTTATCAAATATGCTCTTCCTTCTGCGGCTATGCTTTGCCTAGAGTGGTGGTCTTATGAACTCATAATATTACTATCTGGTCTCTTACCCAACCCACAACTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACACTTTCGATGACTTATTCGATACCACTAGCGATTGCAGCTGCAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGAAACTCTCGAGCAGCACATATTGTGGTCTACGCGGCAATGTCTCTTGCAGTAGTGGATGCATTGATGGTGGGTACGTCTCTATTAGCTGGTAAGAATCTGTTGGGCCAAGTTTTCAGCAGTGACAAGAATACCATCGACTATGTTGCAAAGATGGCTCCACTGGTCTCTATTTCTCTCATACTGGACAGTTTACAAGGGGTTCTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATATAGGGGCTTACATAAACTTTGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATAATAGCCGGTGCCGTTCTGCAAACTCTTCTGCTGGCTCTTGTCACAGGCTGCATAAACTGGGAAAACCAGGCTCGTGAAGCGAGGAAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGAGTCAGAACTTCCCTTTTAA

Protein Analysis

487

Amino Acids

52.76

Weight (kDa)

6.25

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 201 1.3e-33 MatE
MatE PF01554 262 - 423 3.5e-23 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 1331
AccI GTMKAC 2 cut(s) 36, 1005
AccII CGCG 1 cut(s) 1010
AciI CCGC 9 cut(s) 87, 116, 291, 509, 731, 791, 1010, 1197, 1203
AclWI GGATC 4 cut(s) 23, 85, 412, 694
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 232
AcvI CACGTG 1 cut(s) 725
AfaI GTAC 2 cut(s) 698, 1051
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 865
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 3 cut(s) 397, 438, 526
AjnI CCWGG 2 cut(s) 478, 1389
Alw21I GWGCWC 3 cut(s) 20, 730, 882
Alw26I GTCTC 9 cut(s) 377, 584, 713, 851, 863, 896, 1023, 1059, 1147
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 4 cut(s) 23, 85, 412, 694
Ama87I CYCGRG 1 cut(s) 984
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 4 cut(s) 424, 1081, 1306, 1422
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 9 cut(s) 128, 464, 935, 938, 941, 989, 1210, 1268, 1371
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 1081, 1423
AsuHPI GGTGA 4 cut(s) 76, 176, 184, 550
AsuNHI GCTAGC 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 984
BaeGI GKGCMC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 1 cut(s) 1331
BauI CACGAG 2 cut(s) 413, 1395
BbrPI CACGTG 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 20, 730, 882
BbvI GCAGC 9 cut(s) 115, 451, 925, 947, 953, 1001, 1222, 1255, 1358
BccI CCATC 5 cut(s) 230, 683, 1036, 1118, 1123
BceAI ACGGC 2 cut(s) 116, 1319
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 2 cut(s) 480, 1391
BciVI GTATCC 1 cut(s) 1251
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 9 cut(s) 377, 584, 713, 851, 863, 896, 1023, 1059, 1147
BfaI CTAG 4 cut(s) 207, 326, 806, 926
BfmI CTRYAG 3 cut(s) 33, 503, 939
BfoI RGCGCY 1 cut(s) 213
BfuI GTATCC 1 cut(s) 1251
BglII AGATCT 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 480, 1391
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 1081, 1423
BmiI GGNNCC 4 cut(s) 120, 640, 1134, 1333
BmrFI CCNGG 2 cut(s) 480, 1391
BmrI ACTGGG 1 cut(s) 1390
BmsI GCATC 3 cut(s) 1024, 1190, 1280
BmtI GCTAGC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 1390
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 887
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 725
BsaI GGTCTC 2 cut(s) 851, 1147
BsaJI CCNNGG 6 cut(s) 132, 187, 421, 478, 642, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 865
Bse118I RCCGGY 1 cut(s) 1328
Bse1I ACTGG 6 cut(s) 247, 668, 870, 1143, 1164, 1385
Bse3DI GCAATG 2 cut(s) 1020, 1263
BseBI CCWGG 2 cut(s) 480, 1391
BseDI CCNNGG 6 cut(s) 132, 187, 421, 478, 642, 738
BseGI GGATG 3 cut(s) 474, 1039, 1205
BseLI CCNNNNNNNGG 1 cut(s) 865
BseMI GCAATG 2 cut(s) 1020, 1263
BseMII CTCAG 5 cut(s) 158, 301, 664, 708, 1197
BseNI ACTGG 6 cut(s) 247, 668, 870, 1143, 1164, 1385
BseRI GAGGAG 2 cut(s) 651, 694
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 9 cut(s) 115, 451, 925, 947, 953, 1001, 1222, 1255, 1358
Bsh1236I CGCG 1 cut(s) 1010
BshFI GGCC 4 cut(s) 426, 1083, 1308, 1424
BshNI GGYRCC 1 cut(s) 1331
BsiHKAI GWGCWC 3 cut(s) 20, 730, 882
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 2 cut(s) 453, 1329
BslI CCNNNNNNNGG 1 cut(s) 865
BsmAI GTCTC 9 cut(s) 377, 584, 713, 851, 863, 896, 1023, 1059, 1147
BsmBI CGTCTC 1 cut(s) 1059
BsnI GGCC 4 cut(s) 426, 1083, 1308, 1424
Bso31I GGTCTC 2 cut(s) 851, 1147
BsoBI CYCGRG 1 cut(s) 984
Bsp1286I GDGCHC 3 cut(s) 20, 730, 882
Bsp143I GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 9 cut(s) 87, 116, 291, 509, 731, 791, 1010, 1197, 1203
BspANI GGCC 4 cut(s) 426, 1083, 1308, 1424
BspCNI CTCAG 5 cut(s) 157, 300, 663, 709, 1196
BspFNI CGCG 1 cut(s) 1010
BspLI GGNNCC 4 cut(s) 120, 640, 1134, 1333
BspMAI CTGCAG 1 cut(s) 943
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 4 cut(s) 23, 85, 412, 694
BspQI GCTCTTC 1 cut(s) 786
BspT107I GGYRCC 1 cut(s) 1331
BspTNI GGTCTC 2 cut(s) 851, 1147
BsrDI GCAATG 2 cut(s) 1020, 1263
BsrFI RCCGGY 1 cut(s) 1328
BsrI ACTGG 6 cut(s) 247, 668, 870, 1143, 1164, 1385
BssAI RCCGGY 1 cut(s) 1328
BssECI CCNNGG 6 cut(s) 132, 187, 421, 478, 642, 738
BssMI GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
BssSI CACGAG 2 cut(s) 413, 1395
BssT1I CCWWGG 3 cut(s) 421, 642, 738
Bst2BI CACGAG 2 cut(s) 413, 1395
Bst2UI CCWGG 2 cut(s) 480, 1391
Bst4CI ACNGT 2 cut(s) 486, 1166
Bst6I CTCTTC 2 cut(s) 786, 1353
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 208, 946, 1195, 1356
BstDEI CTNAG 7 cut(s) 144, 277, 287, 309, 650, 717, 1183
BstDSI CCRYGG 2 cut(s) 132, 738
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 3 cut(s) 474, 1039, 1205
BstFNI CGCG 1 cut(s) 1010
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 7 cut(s) 31, 67, 80, 162, 420, 628, 689
BstMAI GTCTC 9 cut(s) 377, 584, 713, 851, 863, 896, 1023, 1059, 1147
BstMBI GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
BstNI CCWGG 2 cut(s) 480, 1391
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 478, 1389
BstSFI CTRYAG 3 cut(s) 33, 503, 939
BstSLI GKGCMC 1 cut(s) 730
BstUI CGCG 1 cut(s) 1010
BstV1I GCAGC 9 cut(s) 115, 451, 925, 947, 953, 1001, 1222, 1255, 1358
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 4 cut(s) 28, 64, 77, 686
BstYI RGATCY 4 cut(s) 28, 64, 77, 686
BsuI GTATCC 1 cut(s) 1251
BsuRI GGCC 4 cut(s) 426, 1083, 1308, 1424
BtgI CCRYGG 2 cut(s) 132, 738
BtsCI GGATG 3 cut(s) 474, 1039, 1205
BtsI GCAGTG 1 cut(s) 1102
BtsIMutI CAGTG 3 cut(s) 240, 1102, 1136
Cac8I GCNNGC 4 cut(s) 208, 946, 1195, 1356
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 1328
Cfr13I GGNCC 2 cut(s) 1081, 1423
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 697, 1050
CviAII CATG 8 cut(s) 57, 151, 270, 400, 584, 694, 739, 1427
CviQI GTAC 2 cut(s) 697, 1050
DdeI CTNAG 7 cut(s) 144, 277, 287, 309, 650, 717, 1183
DpnI GATC 7 cut(s) 30, 66, 79, 161, 419, 627, 688
DpnII GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 786, 1353
EarI CTCTTC 2 cut(s) 786, 1353
Eco130I CCWWGG 3 cut(s) 421, 642, 738
Eco31I GGTCTC 2 cut(s) 851, 1147
Eco47III AGCGCT 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 984
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 478, 1389
EcoT14I CCWWGG 3 cut(s) 421, 642, 738
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 3 cut(s) 421, 642, 738
Esp3I CGTCTC 1 cut(s) 1059
FaeI CATG 8 cut(s) 60, 154, 273, 403, 587, 697, 742, 1430
FatI CATG 8 cut(s) 56, 150, 269, 399, 583, 693, 738, 1426
FauI CCCGC 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 2 cut(s) 36, 1005
FokI GGATG 3 cut(s) 461, 1046, 1212
FspBI CTAG 4 cut(s) 207, 326, 806, 926
GlaI GCGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 887
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 4 cut(s) 426, 1083, 1308, 1424
HapII CCGG 2 cut(s) 453, 1329
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 212
Hin1II CATG 8 cut(s) 60, 154, 273, 403, 587, 697, 742, 1430
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 2 cut(s) 101, 407
HinfI GANTC 5 cut(s) 195, 954, 1072, 1430, 1445
HpaII CCGG 2 cut(s) 453, 1329
HphI GGTGA 4 cut(s) 76, 176, 184, 550
Hpy166II GTNNAC 4 cut(s) 37, 728, 1006, 1169
Hpy188I TCNGA 5 cut(s) 321, 718, 1296, 1435, 1450
Hpy188III TCNNGA 4 cut(s) 97, 415, 984, 1397
Hpy8I GTNNAC 4 cut(s) 37, 728, 1006, 1169
HpyAV CCTTC 5 cut(s) 226, 238, 444, 795, 1291
HpyCH4III ACNGT 2 cut(s) 486, 1166
HpyCH4IV ACGT 3 cut(s) 237, 724, 1052
HpyF3I CTNAG 7 cut(s) 144, 277, 287, 309, 650, 717, 1183
HpySE526I ACGT 3 cut(s) 237, 724, 1052
Hsp92II CATG 8 cut(s) 60, 154, 273, 403, 587, 697, 742, 1430
HspAI GCGC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 5 cut(s) 124, 305, 638, 1138, 1238
Lsp1109I GCAGC 9 cut(s) 115, 451, 925, 947, 953, 1001, 1222, 1255, 1358
LweI GCATC 3 cut(s) 1024, 1190, 1280
MaeI CTAG 4 cut(s) 207, 326, 806, 926
MaeII ACGT 3 cut(s) 237, 724, 1052
MaeIII GTNAC 7 cut(s) 52, 153, 182, 233, 238, 1097, 1363
MalI GATC 7 cut(s) 30, 66, 79, 161, 419, 627, 688
MboI GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
MboII GAAGA 4 cut(s) 17, 468, 773, 1340
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 4 cut(s) 28, 64, 77, 686
MhlI GDGCHC 3 cut(s) 20, 730, 882
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 2 cut(s) 438, 965
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 2 cut(s) 189, 1454
MnlI CCTC 9 cut(s) 197, 387, 558, 571, 600, 629, 715, 745, 1398
Mox20I TGGCCA 1 cut(s) 426
Mph1103I ATGCAT 1 cut(s) 1039
MscI TGGCCA 1 cut(s) 426
MseI TTAA 1 cut(s) 1462
MslI CAYNNNNRTG 3 cut(s) 167, 347, 367
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 291, 938
MspI CCGG 2 cut(s) 453, 1329
MspR9I CCNGG 2 cut(s) 480, 1391
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 2 cut(s) 480, 1391
MvnI CGCG 1 cut(s) 1010
NcoI CCATGG 1 cut(s) 738
NdeII GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 8 cut(s) 60, 154, 273, 403, 587, 697, 742, 1430
NlaIV GGNNCC 4 cut(s) 120, 640, 1134, 1333
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 4 cut(s) 182, 238, 1097, 1363
NsiI ATGCAT 1 cut(s) 1039
PaeR7I CTCGAG 1 cut(s) 984
PciSI GCTCTTC 1 cut(s) 786
PfeI GAWTC 3 cut(s) 954, 1072, 1430
PleI GAGTC 2 cut(s) 189, 1453
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 2 cut(s) 189, 1453
Ppu21I YACGTR 1 cut(s) 725
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 478, 1389
PspCI CACGTG 1 cut(s) 725
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 2 cut(s) 478, 1389
PspN4I GGNNCC 4 cut(s) 120, 640, 1134, 1333
PspPI GGNCC 2 cut(s) 1081, 1423
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 4 cut(s) 28, 64, 77, 686
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 698, 1051
RsaNI GTAC 2 cut(s) 697, 1050
RseI CAYNNNNRTG 3 cut(s) 167, 347, 367
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 1 cut(s) 1462
Sau3AI GATC 7 cut(s) 28, 64, 77, 159, 417, 625, 686
Sau96I GGNCC 2 cut(s) 1081, 1423
SchI GAGTC 2 cut(s) 189, 1454
ScrFI CCNGG 2 cut(s) 480, 1391
SduI GDGCHC 3 cut(s) 20, 730, 882
SfaNI GCATC 3 cut(s) 1024, 1190, 1280
SfcI CTRYAG 3 cut(s) 33, 503, 939
Sfr274I CTCGAG 1 cut(s) 984
SlaI CTCGAG 1 cut(s) 984
SmiMI CAYNNNNRTG 3 cut(s) 167, 347, 367
SmlI CTYRAG 2 cut(s) 95, 984
SmoI CTYRAG 2 cut(s) 95, 984
Sse9I AATT 2 cut(s) 438, 965
SsiI CCGC 9 cut(s) 87, 116, 291, 509, 731, 791, 1010, 1197, 1203
SspI AATATT 1 cut(s) 834
SspMI CTAG 4 cut(s) 207, 326, 806, 926
StyD4I CCNGG 2 cut(s) 478, 1389
StyI CCWWGG 3 cut(s) 421, 642, 738
TaaI ACNGT 2 cut(s) 486, 1166
TaiI ACGT 3 cut(s) 240, 727, 1055
TaqI TCGA 5 cut(s) 750, 905, 917, 985, 1113
TasI AATT 2 cut(s) 438, 965
TatI WGTACW 1 cut(s) 696
TauI GCSGC 4 cut(s) 119, 511, 794, 1013
TfiI GAWTC 3 cut(s) 954, 1072, 1430
Tru1I TTAA 1 cut(s) 1462
Tru9I TTAA 1 cut(s) 1462
TscAI CASTG 3 cut(s) 247, 1102, 1143
TseFI GTSAC 4 cut(s) 182, 238, 1097, 1363
TseI GCWGC 9 cut(s) 128, 464, 935, 938, 941, 989, 1210, 1268, 1371
Tsp45I GTSAC 4 cut(s) 182, 238, 1097, 1363
TspDTI ATGAA 6 cut(s) 244, 682, 837, 978, 1280, 1443
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 3 cut(s) 247, 1102, 1143
VneI GTGCAC 1 cut(s) 726
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 984
XmiI GTMKAC 2 cut(s) 36, 1005
XspI CTAG 4 cut(s) 207, 326, 806, 926
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.