Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8171710.1

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Reverse (-)

102 .. 644

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8171710.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggctagtgcacttgaaactttatgtgggcaagcttatggagctaagcagtatcagaaacttggacttcaaacttacactgctatattttctctcaacttagtttgtctaccattatctttgatatggatatttatggcggatatactgatcttcatgggtcaagatccttcaatttctcgtgaagctggcaaattcacaatttggcttattcctggtctatttgcttatgcaactcttcaaccgctcattagatactttcagacacagagtttagtaattcctatgttcataagctcttgtgcgacccttatgttccatattcctctctgttgggttctagtgttcaagtctggccttgataacttgggaggagcattggcaatcagcatttcctattgggtgaatgtgattttacttggagtatacatgaagttttcttctgcatgttcaaagactagagctcccatttctaaggaggtattccaaggaactggagagttccttcgctttgccgtcccttctgcagtaatgatatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

180

Amino Acids

19.99

Weight (kDa)

8.85

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	2 cut(s)	109, 426
AciI	CCGC	2 cut(s)	140, 245
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	17, 71, 174, 242, 349, 453
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	35, 44, 188, 297, 464
AluI	AGCT	5 cut(s)	35, 44, 188, 297, 464
Alw21I	GWGCWC	2 cut(s)	13, 466
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	355
ApaLI	GTGCAC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	13, 466
BceAI	ACGGC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	3 cut(s)	6, 341, 459
BfmI	CTRYAG	1 cut(s)	525
BlpI	GCTNAGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	387
BseSI	GKGCMC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	13, 466
BslFI	GGGAC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	13, 466
Bsp143I	GATC	2 cut(s)	150, 166
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	140, 245
BspANI	GGCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	150, 166
BssNAI	GTATAC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	487
Bst1107I	GTATAC	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	33, 190
BstDEI	CTNAG	3 cut(s)	45, 100, 474
BstKTI	GATC	2 cut(s)	153, 169
BstMBI	GATC	2 cut(s)	150, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	33, 190
CviAII	CATG	3 cut(s)	157, 430, 447
CviJI	RGCY	8 cut(s)	5, 35, 44, 188, 208, 297, 357, 464
CviKI_1	RGCY	8 cut(s)	5, 35, 44, 188, 208, 297, 357, 464
DdeI	CTNAG	3 cut(s)	45, 100, 474
DpnI	GATC	2 cut(s)	152, 168
DpnII	GATC	2 cut(s)	150, 166
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	160, 433, 450
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	156, 429, 446
FblI	GTMKAC	2 cut(s)	109, 426
FriOI	GRGCYC	1 cut(s)	466
FspBI	CTAG	3 cut(s)	6, 341, 459
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	160, 433, 450
HindIII	AAGCTT	1 cut(s)	33
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	11, 110, 427
Hpy188I	TCNGA	2 cut(s)	57, 264
Hpy188III	TCNNGA	2 cut(s)	164, 182
Hpy8I	GTNNAC	3 cut(s)	11, 110, 427
HpyAV	CCTTC	3 cut(s)	180, 515, 531
HpyCH4V	TGCA	4 cut(s)	11, 233, 446, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	45, 100, 474
Hsp92II	CATG	3 cut(s)	160, 433, 450
Kzo9I	GATC	2 cut(s)	150, 166
LmnI	GCTCC	3 cut(s)	41, 374, 469
LpnPI	CCDG	5 cut(s)	174, 201, 228, 339, 480
MaeI	CTAG	3 cut(s)	6, 341, 459
MalI	GATC	2 cut(s)	152, 168
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	2 cut(s)	150, 166
MboII	GAAGA	3 cut(s)	145, 230, 432
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	13, 466
MluCI	AATT	4 cut(s)	174, 194, 201, 279
MnlI	CCTC	3 cut(s)	336, 365, 472
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	2 cut(s)	150, 166
NlaIII	CATG	3 cut(s)	160, 433, 450
NspI	RCATGY	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	150, 166
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	13, 466
SetI	ASST	6 cut(s)	37, 46, 190, 299, 466, 483
SfcI	CTRYAG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	174, 194, 201, 279
SsiI	CCGC	2 cut(s)	140, 245
SspMI	CTAG	3 cut(s)	6, 341, 459
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	487
TasI	AATT	4 cut(s)	174, 194, 201, 279
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	145, 280, 446
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	2 cut(s)	109, 426
XspI	CTAG	3 cut(s)	6, 341, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.