RLG00000006714

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
9881116 .. 9883335
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006714

Sequence Viewer

Length: 1449 bp
ATGGAAGAGAGCCTGTTAACATTAGCAAAAGAAGTAAAAGATCCAAGAAAATTTAGTAGTACTAGTTTGACATGGGCTTATTTCTTTGAAGAAGTGAAGAGGCAATGTTACATAGCAGGACCTATGGTTGCCGTGATTCTATCCCAGAACTTGTTGCGTGTGGTTTCGATGATGATGGTTGGTCACTTGGGTGAGCTTCCTCTCTCTAGCACCTCCATTGCCATCTCCCCCTCTGGAGTCACTGGCTTTAGTCTTTTTATAGGAATGGCCAGTGCACTGGAAACAATATGTGGGCAAGCGTATGGAGCTAAGCAGTATCAGAAACTTGGACTCCAAACTTACACTGCTATAGTTTCTCTCAACTTAATTTGTCTCCCTTTATCTTTGTTATGGATATATATGGAGGACTTGCTGATTTTCATGGGTCAAGATCCTCTCATTTCTCGCGAAGCTGGCAAATTCACAATTTGGCTCATTCCCGCTCTATTTGCTTATGCAACTCTTCAACCACTCATCAGATACTTTCAGACACAAAGTTTGGTGACTCCTATGCTCCTAAGCTCTTGCGCTACCCTTTTGTTCCATATTCCTCTTTGTTGGGTTCTAGTATTCAAGTCTGGACTGGATGTCCTTGGAGGGGCATTAGCAATAAGTGTCTCATATTGGTTGAATGTGATTTTACTTGGACTGTACATGAAGTTTTCTTCTGCTTGTTCACAAACCAGAGCTCCAGTTTCTAAGGAAGTATTCCATGGAATGAGAGAGTTCTTTTACCTTGCCATCCCTTCTTCAGTAATGATATGCATCGAGTGGTGGTCATTTGAGCTGCTTATTTTGCTTTCTGGGCTTCTACCAAATCCAGCTCTTGAAACTTCGGTTTTGTCTGTGTGTCTCCAGACCATTTCAACGCTCTATGCAATACCTTATGGGTTTGGTGCTGCAGCGAGTACTAGAGTTGCAAATGAACTGGGAGCTGGTAACTCAGAATGTGCTCGTATAGCAGCGCATGTTGCATTGTTTCTTGCAGTCACAGAGACAAGCATAGAAACAACAACCCTCTTTGCCTTCCGGCGTTCTTTTGGTTACACATTTACCAATGAGAAACGAGTCGTTGATTATGTCACATCAATGGCGCCTCTAGTGTGTCTGTCTCTTGTACTAGACAGCTTGCAAGGGGTCCTTACAGGTATTGCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAATCTTGGAGCATTTTATCTTTGTGGAATTCCAGTTGCTGCTATATTGGCTTTCCGGTTAGAGCTGAGAGGAAGAGGCCTTTGGATTGGAATACAAGTTGGTTCTTTGGTGCAGACCATAACGCTTTCTTTTGTAACTAGTAGTACAAATTGGGAAATGCAGGCAAGTAAGGCAAGGGAGATGGTATTCCAGGGAGGCTCATCAGAAGATATCGGATAG

Protein Analysis

483

Amino Acids

52.73

Weight (kDa)

6.53

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 201 1.6e-30 MatE
MatE PF01554 262 - 424 1.6e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1132
AccBSI CCGCTC 1 cut(s) 482
AccII CGCG 1 cut(s) 447
AciI CCGC 1 cut(s) 480
AclWI GGATC 2 cut(s) 35, 425
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 50, 458, 1257
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 1133
AfaI GTAC 5 cut(s) 61, 692, 949, 1158, 1375
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 6 cut(s) 89, 506, 613, 670, 869, 906
AhdI GACNNNNNGTC 1 cut(s) 626
AhlI ACTAGT 2 cut(s) 62, 1367
AjnI CCWGG 1 cut(s) 1419
AjuI GAANNNNNNNTTGG 2 cut(s) 1294, 1326
AleI CACNNNNGTG 1 cut(s) 189
Alw21I GWGCWC 3 cut(s) 277, 730, 994
Alw26I GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 2 cut(s) 35, 425
AlwNI CAGNNNCTG 1 cut(s) 1268
AoxI GGCC 2 cut(s) 267, 1306
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 6 cut(s) 826, 938, 941, 1001, 1210, 1268
ApoI RAATTY 3 cut(s) 50, 458, 1257
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspLEI GCGC 3 cut(s) 569, 1006, 1135
AspS9I GGNCC 2 cut(s) 119, 1177
AsuHPI GGTGA 2 cut(s) 203, 553
AvaII GGWCC 2 cut(s) 119, 1177
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 730
Bbv12I GWGCWC 3 cut(s) 277, 730, 994
BbvI GCAGC 6 cut(s) 813, 925, 953, 1013, 1222, 1255
BccI CCATC 4 cut(s) 169, 230, 788, 1405
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 1421
BcoDI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BcuI ACTAGT 2 cut(s) 62, 1367
BfaI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
BfmI CTRYAG 2 cut(s) 348, 939
BfoI RGCGCY 1 cut(s) 1136
BisI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 828, 940, 943, 1003, 1212, 1270
BmcAI AGTACT 2 cut(s) 61, 949
Bme1390I CCNGG 1 cut(s) 1421
Bme18I GGWCC 2 cut(s) 119, 1177
BmeRI GACNNNNNGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 119, 1177
BmiI GGNNCC 2 cut(s) 1134, 1178
BmrFI CCNGG 1 cut(s) 1421
BmrI ACTGGG 1 cut(s) 977
BmsI GCATC 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 977
BpmI CTGGAG 3 cut(s) 255, 714, 878
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 1133
BsaJI CCNNGG 3 cut(s) 631, 751, 1420
BsaWI WCCGGW 1 cut(s) 1284
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 7 cut(s) 247, 270, 282, 627, 731, 972, 1262
Bse3DI GCAATG 2 cut(s) 110, 216
Bse8I GATNNNNATC 1 cut(s) 803
BseBI CCWGG 1 cut(s) 1421
BseDI CCNNGG 3 cut(s) 631, 751, 1420
BseGI GGATG 3 cut(s) 631, 780, 1205
BseJI GATNNNNATC 1 cut(s) 803
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 110, 216
BseMII CTCAG 2 cut(s) 996, 1286
BseNI ACTGG 7 cut(s) 247, 270, 282, 627, 731, 972, 1262
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 6 cut(s) 813, 925, 953, 1013, 1222, 1255
BsgI GTGCAG 1 cut(s) 1361
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 269, 1308
BshNI GGYRCC 1 cut(s) 1132
BsiHKAI GWGCWC 3 cut(s) 277, 730, 994
BsiSI CCGG 2 cut(s) 1069, 1285
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BsnI GGCC 2 cut(s) 269, 1308
Bsp1286I GDGCHC 3 cut(s) 277, 730, 994
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 2 cut(s) 40, 430
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 751
Bsp68I TCGCGA 1 cut(s) 447
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 269, 1308
BspCNI CTCAG 2 cut(s) 995, 1287
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 2 cut(s) 1134, 1178
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 2 cut(s) 35, 425
BspT107I GGYRCC 1 cut(s) 1132
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 110, 216
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 7 cut(s) 247, 270, 282, 627, 731, 972, 1262
BssECI CCNNGG 3 cut(s) 631, 751, 1420
BssMI GATC 2 cut(s) 40, 430
BssNI GRCGYC 1 cut(s) 1133
BssT1I CCWWGG 2 cut(s) 631, 751
Bst2UI CCWGG 1 cut(s) 1421
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 3 cut(s) 92, 507, 1297
BstACI GRCGYC 1 cut(s) 1133
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 4 cut(s) 297, 454, 1169, 1392
BstDEI CTNAG 5 cut(s) 309, 557, 738, 982, 1295
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 3 cut(s) 631, 780, 1205
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 1136
BstHHI GCGC 3 cut(s) 569, 1006, 1135
BstKTI GATC 2 cut(s) 43, 433
BstMAI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BstMBI GATC 2 cut(s) 40, 430
BstMWI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
BstNI CCWGG 1 cut(s) 1421
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 1419
BstSFI CTRYAG 2 cut(s) 348, 939
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 6 cut(s) 813, 925, 953, 1013, 1222, 1255
BstX2I RGATCY 2 cut(s) 40, 430
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 40, 430
BsuRI GGCC 2 cut(s) 269, 1308
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 3 cut(s) 631, 780, 1205
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 4 cut(s) 240, 275, 277, 342
BtuMI TCGCGA 1 cut(s) 447
Cac8I GCNNGC 4 cut(s) 297, 454, 1169, 1392
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 3 cut(s) 569, 1006, 1135
Cfr13I GGNCC 2 cut(s) 119, 1177
Csp6I GTAC 5 cut(s) 60, 691, 948, 1157, 1374
CviAII CATG 5 cut(s) 72, 421, 694, 752, 1007
CviQI GTAC 5 cut(s) 60, 691, 948, 1157, 1374
DdeI CTNAG 5 cut(s) 309, 557, 738, 982, 1295
DinI GGCGCC 1 cut(s) 1134
DpnI GATC 2 cut(s) 42, 432
DpnII GATC 2 cut(s) 40, 430
DriI GACNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 92, 507, 1297
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 3 cut(s) 92, 507, 1297
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 631, 751
Eco147I AGGCCT 1 cut(s) 1308
Eco24I GRGCYC 1 cut(s) 730
Eco32I GATATC 1 cut(s) 1441
Eco47I GGWCC 2 cut(s) 119, 1177
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 728
EcoO109I RGGNCCY 2 cut(s) 119, 1177
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 1 cut(s) 1419
EcoRV GATATC 1 cut(s) 1441
EcoT14I CCWWGG 2 cut(s) 631, 751
EcoT22I ATGCAT 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 730
EgeI GGCGCC 1 cut(s) 1134
EheI GGCGCC 1 cut(s) 1134
ErhI CCWWGG 2 cut(s) 631, 751
FaeI CATG 5 cut(s) 75, 424, 697, 755, 1010
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FatI CATG 5 cut(s) 71, 420, 693, 751, 1006
FauI CCCGC 1 cut(s) 487
Fnu4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
FokI GGATG 3 cut(s) 638, 767, 1212
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
FspBI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
GlaI GCGC 3 cut(s) 568, 1005, 1134
GluI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
GsuI CTGGAG 3 cut(s) 255, 714, 878
HaeII RGCGCY 1 cut(s) 1136
HaeIII GGCC 2 cut(s) 269, 1308
HapII CCGG 2 cut(s) 1069, 1285
HhaI GCGC 3 cut(s) 569, 1006, 1135
Hin1I GRCGYC 1 cut(s) 1133
Hin1II CATG 5 cut(s) 75, 424, 697, 755, 1010
Hin6I GCGC 3 cut(s) 567, 1004, 1133
HinP1I GCGC 3 cut(s) 567, 1004, 1133
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 5 cut(s) 136, 237, 330, 544, 1107
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 2 cut(s) 1069, 1285
HphI GGTGA 2 cut(s) 203, 553
Hpy166II GTNNAC 3 cut(s) 18, 275, 716
Hpy188I TCNGA 6 cut(s) 321, 518, 528, 985, 1435, 1445
Hpy188III TCNNGA 6 cut(s) 234, 428, 446, 618, 866, 895
Hpy8I GTNNAC 3 cut(s) 18, 275, 716
HpyAV CCTTC 2 cut(s) 795, 1075
HpyCH4III ACNGT 1 cut(s) 690
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
HpyF3I CTNAG 5 cut(s) 309, 557, 738, 982, 1295
Hsp92I GRCGYC 1 cut(s) 1133
Hsp92II CATG 5 cut(s) 75, 424, 697, 755, 1010
HspAI GCGC 3 cut(s) 567, 1004, 1133
KasI GGCGCC 1 cut(s) 1132
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 40, 430
LmnI GCTCC 5 cut(s) 305, 558, 733, 971, 1238
Lsp1109I GCAGC 6 cut(s) 813, 925, 953, 1013, 1222, 1255
LweI GCATC 1 cut(s) 813
MaeI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
MaeIII GTNAC 9 cut(s) 107, 182, 238, 541, 977, 1027, 1082, 1120, 1363
MalI GATC 2 cut(s) 42, 432
MbiI CCGCTC 1 cut(s) 482
MboI GATC 2 cut(s) 40, 430
MboII GAAGA 8 cut(s) 17, 101, 109, 494, 696, 780, 1314, 1448
MflI RGATCY 2 cut(s) 40, 430
MhlI GDGCHC 3 cut(s) 277, 730, 994
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
MluNI TGGCCA 1 cut(s) 269
Mly113I GGCGCC 1 cut(s) 1133
MlyI GAGTC 4 cut(s) 246, 324, 538, 1116
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 806
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 17, 365
MslI CAYNNNNRTG 2 cut(s) 189, 1127
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 2 cut(s) 1069, 1285
MspR9I CCNGG 1 cut(s) 1421
MvaI CCWGG 1 cut(s) 1421
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
NarI GGCGCC 1 cut(s) 1133
NcoI CCATGG 1 cut(s) 751
NdeII GATC 2 cut(s) 40, 430
NlaIII CATG 5 cut(s) 75, 424, 697, 755, 1010
NlaIV GGNNCC 2 cut(s) 1134, 1178
NmuCI GTSAC 5 cut(s) 182, 238, 541, 1027, 1120
NruI TCGCGA 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 1 cut(s) 1010
OliI CACNNNNGTG 1 cut(s) 189
PceI AGGCCT 1 cut(s) 1308
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 6 cut(s) 828, 940, 943, 1003, 1212, 1270
PleI GAGTC 4 cut(s) 245, 324, 538, 1115
PluTI GGCGCC 1 cut(s) 1136
PpsI GAGTC 4 cut(s) 245, 324, 538, 1115
PpuMI RGGWCCY 2 cut(s) 119, 1177
Psp124BI GAGCTC 1 cut(s) 730
Psp5II RGGWCCY 2 cut(s) 119, 1177
Psp6I CCWGG 1 cut(s) 1419
PspGI CCWGG 1 cut(s) 1419
PspN4I GGNNCC 2 cut(s) 1134, 1178
PspPI GGNCC 2 cut(s) 119, 1177
PspPPI RGGWCCY 2 cut(s) 119, 1177
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 2 cut(s) 40, 430
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 5 cut(s) 61, 692, 949, 1158, 1375
RsaNI GTAC 5 cut(s) 60, 691, 948, 1157, 1374
RseI CAYNNNNRTG 2 cut(s) 189, 1127
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 17, 365
SatI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
Sau3AI GATC 2 cut(s) 40, 430
Sau96I GGNCC 2 cut(s) 119, 1177
ScaI AGTACT 2 cut(s) 61, 949
SchI GAGTC 4 cut(s) 246, 324, 538, 1116
ScrFI CCNGG 1 cut(s) 1421
SduI GDGCHC 3 cut(s) 277, 730, 994
SfaNI GCATC 1 cut(s) 813
SfcI CTRYAG 2 cut(s) 348, 939
SfoI GGCGCC 1 cut(s) 1134
SinI GGWCC 2 cut(s) 119, 1177
SmiMI CAYNNNNRTG 2 cut(s) 189, 1127
SpeI ACTAGT 2 cut(s) 62, 1367
Sse9I AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
SseBI AGGCCT 1 cut(s) 1308
SsiI CCGC 1 cut(s) 480
SspDI GGCGCC 1 cut(s) 1132
SspMI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 1308
StyD4I CCNGG 1 cut(s) 1419
StyI CCWWGG 2 cut(s) 631, 751
TaaI ACNGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 167, 807
TasI AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
TatI WGTACW 5 cut(s) 59, 690, 947, 1156, 1373
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 17, 365
Tru9I TTAA 2 cut(s) 17, 365
TscAI CASTG 4 cut(s) 247, 277, 282, 349
TseFI GTSAC 5 cut(s) 182, 238, 541, 1027, 1120
TseI GCWGC 6 cut(s) 826, 938, 941, 1001, 1210, 1268
Tsp45I GTSAC 5 cut(s) 182, 238, 541, 1027, 1120
TspDTI ATGAA 3 cut(s) 409, 710, 978
TspRI CASTG 4 cut(s) 247, 277, 282, 349
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 119, 1177
XapI RAATTY 3 cut(s) 50, 458, 1257
XceI RCATGY 1 cut(s) 1010
XspI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
ZrmI AGTACT 2 cut(s) 61, 949
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.