AT1G15180

Mate efflux family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5224294 .. 5226778
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15180.2

Sequence Viewer

Length: 1449 bp
ATGGGAGACGCAGAGAGCACCTCCAAAACTAGCTTGCTGCTCCCGGTGGAAAGAGTTGAAAACGTGACATGGAGAGATCTGCGAGATGGATTATTCACCGCAGAACTCAAGAGGCTTATCTGCTTTGCCGCTCCTATGGCGGCTGTTGTTATCGCTCAGTTCATGTTGCAGATCATCTCAATGGTGATGGTTGGTCACCTCGGAAATCTCTCCCTCGCTAGTGCCTCTCTCGCCTCCTCCTTCTGCAACGTCACCGGCTTCAGCTTCATCGTAGGATTGTCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATATCGGAAAGTAGGAGTTCAGACTTACACAGCAATGTTCTGTCTTGCATTAGTATGTCTCCCTCTCACTCTCATATGGTTAAACATGGAAACGCTTCTTGTATTCCTTGGCCAAGATCCTTCTATTGCTCACGAAGCCGGCAGATATGCTGCTTGCCTCATCCCAGGACTGTTTGCTTACGCTGTTCTACAGCCTCTCACTCGCTACTTCCAAAACCAGAGCATGATTACACCTCTCCTCATCACCTCTTGTTTTGTGTTCTGTCTCCATGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCTTGGTAATCTTGGAGGAGCCTTAGCTCTCAGTTTTTCGAACTGTCTTTATACCATTATCCTTGGATCTTTAATGTGCTTCTCCTCTGCCTGTTCTGAGACACGCGCACCGCTCTCCATGGAGATATTTGACGGCATTGGAGAGTTCTTCAGATATGCTCTTCCTTCTGCGGCTATGATTTGCCTGGAGTGGTGGTCATATGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCACAGCTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACAACTGCGACAGTCTATTCGATACATCTTGCAATCGCAGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGAAACTCTCGAGCAGCTAATATTGTGGTCTACGCAGCAATGTCTCTTGCAGTAGTGGAAATATTAATATTGAGTACTTCTCTATTAGTCGGCAGGAATGTTTTCGGCCATGTTTTCAGCAGTGACAAGGAAACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATACTGGACGGTTTACAAGGGGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAGCTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTTCTGCAAACGCTTCTGCTTACTCTTGTCACGGGCTGCACAAACTGGGAAAGCCAGGCCGATAAAGCGAGAAATCGAATGGCTTTGGCCTATGGAACGTAA

Protein Analysis

482

Amino Acids

51.85

Weight (kDa)

6.38

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 4 - 85 2.2e-11 MatE
MatE PF01554 146 - 280 7.2e-17 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AccB1I GGYRCC 1 cut(s) 1343
AccBSI CCGCTC 2 cut(s) 131, 745
AccI GTMKAC 1 cut(s) 1017
AccII CGCG 1 cut(s) 738
AciI CCGC 6 cut(s) 99, 129, 140, 743, 803, 1215
AclWI GGATC 2 cut(s) 437, 706
AcoI YGGCCR 2 cut(s) 436, 1093
AcuI CTGAAG 2 cut(s) 244, 766
AfaI GTAC 1 cut(s) 1063
AfiI CCNNNNNNNGG 1 cut(s) 877
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 3 cut(s) 490, 816, 1401
Alw21I GWGCWC 2 cut(s) 20, 894
Alw26I GTCTC 8 cut(s) 389, 596, 725, 863, 875, 908, 1035, 1159
AlwI GGATC 2 cut(s) 437, 706
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 5 cut(s) 436, 1093, 1318, 1404, 1434
ApeKI GCWGC 9 cut(s) 37, 476, 947, 950, 953, 1001, 1022, 1280, 1383
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
AseI ATTAAT 1 cut(s) 1052
Asp700I GAANNNNTTC 2 cut(s) 420, 1088
AspLEI GCGC 1 cut(s) 740
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 5 cut(s) 88, 188, 196, 244, 562
AsuII TTCGAA 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 996
BalI TGGCCA 1 cut(s) 438
BanI GGYRCC 1 cut(s) 1343
Bbv12I GWGCWC 2 cut(s) 20, 894
BbvI GCAGC 9 cut(s) 24, 463, 937, 959, 965, 1013, 1034, 1267, 1370
BccI CCATC 5 cut(s) 80, 181, 1130, 1135, 1212
BceAI ACGGC 2 cut(s) 781, 1331
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 3 cut(s) 492, 818, 1403
BciVI GTATCC 1 cut(s) 1263
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 8 cut(s) 389, 596, 725, 863, 875, 908, 1035, 1159
BfaI CTAG 2 cut(s) 30, 219
BfmI CTRYAG 2 cut(s) 515, 951
BfuI GTATCC 1 cut(s) 1263
BglII AGATCT 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 321
BmcAI AGTACT 1 cut(s) 1063
Bme1390I CCNGG 4 cut(s) 44, 492, 818, 1403
BmeT110I CYCGRG 1 cut(s) 996
BmiI GGNNCC 3 cut(s) 652, 1146, 1345
BmrFI CCNGG 4 cut(s) 44, 492, 818, 1403
BmrI ACTGGG 1 cut(s) 1402
BmsI GCATC 2 cut(s) 1202, 1292
BmuI ACTGGG 1 cut(s) 1402
BplI GAGNNNNNCTC 3 cut(s) 37, 1051, 1083
BpmI CTGGAG 2 cut(s) 839, 899
Bpu10I CCTNAGC 1 cut(s) 655
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 671
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 1331
BsaI GGTCTC 2 cut(s) 863, 1159
BsaJI CCNNGG 5 cut(s) 199, 433, 490, 694, 750
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse118I RCCGGY 3 cut(s) 254, 464, 1340
Bse1I ACTGG 2 cut(s) 1176, 1397
Bse3DI GCAATG 3 cut(s) 366, 1032, 1275
Bse8I GATNNNNATC 1 cut(s) 1331
BseBI CCWGG 3 cut(s) 492, 818, 1403
BseDI CCNNGG 5 cut(s) 199, 433, 490, 694, 750
BseGI GGATG 3 cut(s) 486, 1217, 1223
BseJI GATNNNNATC 1 cut(s) 1331
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMI GCAATG 3 cut(s) 366, 1032, 1275
BseMII CTCAG 4 cut(s) 170, 676, 720, 1209
BseNI ACTGG 2 cut(s) 1176, 1397
BseRI GAGGAG 4 cut(s) 226, 554, 663, 706
BseXI GCAGC 9 cut(s) 24, 463, 937, 959, 965, 1013, 1034, 1267, 1370
BsgI GTGCAG 1 cut(s) 1369
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 5 cut(s) 438, 1095, 1320, 1406, 1436
BshNI GGYRCC 1 cut(s) 1343
BsiHKAI GWGCWC 2 cut(s) 20, 894
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 4 cut(s) 44, 255, 465, 1341
BslI CCNNNNNNNGG 1 cut(s) 877
BsmAI GTCTC 8 cut(s) 389, 596, 725, 863, 875, 908, 1035, 1159
BsnI GGCC 5 cut(s) 438, 1095, 1320, 1406, 1436
Bso31I GGTCTC 2 cut(s) 863, 1159
BsoBI CYCGRG 1 cut(s) 996
Bsp119I TTCGAA 1 cut(s) 671
Bsp1286I GDGCHC 2 cut(s) 20, 894
Bsp143I GATC 4 cut(s) 76, 171, 442, 698
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 6 cut(s) 99, 129, 140, 743, 803, 1215
BspANI GGCC 5 cut(s) 438, 1095, 1320, 1406, 1436
BspCNI CTCAG 4 cut(s) 169, 675, 721, 1208
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 652, 1146, 1345
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 2 cut(s) 437, 706
BspQI GCTCTTC 1 cut(s) 798
BspT104I TTCGAA 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 1343
BspTNI GGTCTC 2 cut(s) 863, 1159
BsrBI CCGCTC 2 cut(s) 131, 745
BsrDI GCAATG 3 cut(s) 366, 1032, 1275
BsrFI RCCGGY 3 cut(s) 254, 464, 1340
BsrI ACTGG 2 cut(s) 1176, 1397
BssAI RCCGGY 3 cut(s) 254, 464, 1340
BssECI CCNNGG 5 cut(s) 199, 433, 490, 694, 750
BssMI GATC 4 cut(s) 76, 171, 442, 698
BssT1I CCWWGG 3 cut(s) 433, 694, 750
Bst2UI CCWGG 3 cut(s) 492, 818, 1403
Bst4CI ACNGT 4 cut(s) 498, 677, 922, 1178
Bst6I CTCTTC 1 cut(s) 798
BstBI TTCGAA 1 cut(s) 671
BstC8I GCNNGC 5 cut(s) 35, 466, 481, 611, 958
BstDEI CTNAG 8 cut(s) 156, 289, 321, 655, 662, 729, 1195, 1246
BstDSI CCRYGG 1 cut(s) 750
BstEII GGTNACC 1 cut(s) 194
BstF5I GGATG 3 cut(s) 486, 1217, 1223
BstFNI CGCG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 4 cut(s) 79, 174, 445, 701
BstMAI GTCTC 8 cut(s) 389, 596, 725, 863, 875, 908, 1035, 1159
BstMBI GATC 4 cut(s) 76, 171, 442, 698
BstMWI GCNNNNNNNGC 9 cut(s) 137, 230, 317, 461, 947, 953, 1142, 1289, 1412
BstNI CCWGG 3 cut(s) 492, 818, 1403
BstPI GGTNACC 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 42, 490, 816, 1401
BstSFI CTRYAG 2 cut(s) 515, 951
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 9 cut(s) 24, 463, 937, 959, 965, 1013, 1034, 1267, 1370
BstX2I RGATCY 3 cut(s) 76, 442, 698
BstYI RGATCY 3 cut(s) 76, 442, 698
BsuI GTATCC 1 cut(s) 1263
BsuRI GGCC 5 cut(s) 438, 1095, 1320, 1406, 1436
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 3 cut(s) 486, 1217, 1223
BtsI GCAGTG 1 cut(s) 1114
BtsIMutI CAGTG 1 cut(s) 1114
Cac8I GCNNGC 5 cut(s) 35, 466, 481, 611, 958
CfoI GCGC 1 cut(s) 740
Cfr10I RCCGGY 3 cut(s) 254, 464, 1340
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 1062
CviAII CATG 8 cut(s) 69, 163, 282, 412, 550, 596, 751, 1097
CviQI GTAC 1 cut(s) 1062
DdeI CTNAG 8 cut(s) 156, 289, 321, 655, 662, 729, 1195, 1246
DpnI GATC 4 cut(s) 78, 173, 444, 700
DpnII GATC 4 cut(s) 76, 171, 442, 698
EaeI YGGCCR 2 cut(s) 436, 1093
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 3 cut(s) 433, 694, 750
Eco31I GGTCTC 2 cut(s) 863, 1159
Eco57I CTGAAG 2 cut(s) 244, 766
Eco88I CYCGRG 1 cut(s) 996
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
EcoRII CCWGG 3 cut(s) 490, 816, 1401
EcoT14I CCWWGG 3 cut(s) 433, 694, 750
ErhI CCWWGG 3 cut(s) 433, 694, 750
FaeI CATG 8 cut(s) 72, 166, 285, 415, 553, 599, 754, 1100
FatI CATG 8 cut(s) 68, 162, 281, 411, 549, 595, 750, 1096
FauNDI CATATG 2 cut(s) 401, 832
FblI GTMKAC 1 cut(s) 1017
FokI GGATG 3 cut(s) 473, 1224, 1230
FspBI CTAG 2 cut(s) 30, 219
GlaI GCGC 1 cut(s) 739
GsuI CTGGAG 2 cut(s) 839, 899
HaeIII GGCC 5 cut(s) 438, 1095, 1320, 1406, 1436
HapII CCGG 4 cut(s) 44, 255, 465, 1341
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 740
Hin1II CATG 8 cut(s) 72, 166, 285, 415, 553, 599, 754, 1100
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 3 cut(s) 966, 1300, 1332
HpaII CCGG 4 cut(s) 44, 255, 465, 1341
HphI GGTGA 5 cut(s) 88, 188, 196, 244, 562
Hpy166II GTNNAC 2 cut(s) 1018, 1181
Hpy188I TCNGA 6 cut(s) 203, 333, 348, 730, 785, 1308
Hpy188III TCNNGA 4 cut(s) 109, 458, 996, 1297
Hpy8I GTNNAC 2 cut(s) 1018, 1181
HpyAV CCTTC 4 cut(s) 250, 456, 807, 1303
HpyCH4III ACNGT 4 cut(s) 498, 677, 922, 1178
HpyCH4IV ACGT 3 cut(s) 63, 249, 1445
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 230, 317, 461, 947, 953, 1142, 1289, 1412
HpyF3I CTNAG 8 cut(s) 156, 289, 321, 655, 662, 729, 1195, 1246
HpySE526I ACGT 3 cut(s) 63, 249, 1445
Hsp92II CATG 8 cut(s) 72, 166, 285, 415, 553, 599, 754, 1100
HspAI GCGC 1 cut(s) 738
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 76, 171, 442, 698
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 7 cut(s) 45, 136, 317, 650, 1150, 1232, 1250
Lsp1109I GCAGC 9 cut(s) 24, 463, 937, 959, 965, 1013, 1034, 1267, 1370
LweI GCATC 2 cut(s) 1202, 1292
MaeI CTAG 2 cut(s) 30, 219
MaeII ACGT 3 cut(s) 63, 249, 1445
MaeIII GTNAC 5 cut(s) 64, 194, 250, 1109, 1375
MalI GATC 4 cut(s) 78, 173, 444, 700
MbiI CCGCTC 2 cut(s) 131, 745
MboI GATC 4 cut(s) 76, 171, 442, 698
MboII GAAGA 2 cut(s) 772, 785
MflI RGATCY 3 cut(s) 76, 442, 698
MhlI GDGCHC 2 cut(s) 20, 894
MlsI TGGCCA 1 cut(s) 438
MluNI TGGCCA 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 438
MroNI GCCGGC 1 cut(s) 464
MroXI GAANNNNTTC 2 cut(s) 420, 1088
MscI TGGCCA 1 cut(s) 438
MseI TTAA 3 cut(s) 407, 704, 1052
MslI CAYNNNNRTG 3 cut(s) 179, 359, 379
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 2 cut(s) 877, 950
MspI CCGG 4 cut(s) 44, 255, 465, 1341
MspR9I CCNGG 4 cut(s) 44, 492, 818, 1403
MvaI CCWGG 3 cut(s) 492, 818, 1403
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 9 cut(s) 137, 230, 317, 461, 947, 953, 1142, 1289, 1412
NaeI GCCGGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 750
NdeI CATATG 2 cut(s) 401, 832
NdeII GATC 4 cut(s) 76, 171, 442, 698
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 8 cut(s) 72, 166, 285, 415, 553, 599, 754, 1100
NlaIV GGNNCC 3 cut(s) 652, 1146, 1345
NmuCI GTSAC 5 cut(s) 64, 194, 250, 1109, 1375
NspV TTCGAA 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 996
PciSI GCTCTTC 1 cut(s) 798
PdiI GCCGGC 1 cut(s) 466
PdmI GAANNNNTTC 2 cut(s) 420, 1088
PfeI GAWTC 3 cut(s) 966, 1300, 1332
PshBI ATTAAT 1 cut(s) 1052
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 3 cut(s) 490, 816, 1401
PspEI GGTNACC 1 cut(s) 194
PspGI CCWGG 3 cut(s) 490, 816, 1401
PspN4I GGNNCC 3 cut(s) 652, 1146, 1345
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 3 cut(s) 76, 442, 698
PvuII CAGCTG 2 cut(s) 877, 950
RsaI GTAC 1 cut(s) 1063
RsaNI GTAC 1 cut(s) 1062
RseI CAYNNNNRTG 3 cut(s) 179, 359, 379
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 3 cut(s) 407, 704, 1052
Sau3AI GATC 4 cut(s) 76, 171, 442, 698
ScaI AGTACT 1 cut(s) 1063
ScrFI CCNGG 4 cut(s) 44, 492, 818, 1403
SduI GDGCHC 2 cut(s) 20, 894
SfaNI GCATC 2 cut(s) 1202, 1292
SfcI CTRYAG 2 cut(s) 515, 951
Sfr274I CTCGAG 1 cut(s) 996
SfuI TTCGAA 1 cut(s) 671
SlaI CTCGAG 1 cut(s) 996
SmiMI CAYNNNNRTG 3 cut(s) 179, 359, 379
SmlI CTYRAG 2 cut(s) 107, 996
SmoI CTYRAG 2 cut(s) 107, 996
SsiI CCGC 6 cut(s) 99, 129, 140, 743, 803, 1215
SspI AATATT 4 cut(s) 846, 1009, 1050, 1056
SspMI CTAG 2 cut(s) 30, 219
StyD4I CCNGG 4 cut(s) 42, 490, 816, 1401
StyI CCWWGG 3 cut(s) 433, 694, 750
TaaI ACNGT 4 cut(s) 498, 677, 922, 1178
TaiI ACGT 3 cut(s) 66, 252, 1448
TaqI TCGA 5 cut(s) 671, 929, 997, 1125, 1423
TatI WGTACW 1 cut(s) 1061
TauI GCSGC 3 cut(s) 131, 143, 806
TfiI GAWTC 3 cut(s) 966, 1300, 1332
Tru1I TTAA 3 cut(s) 407, 704, 1052
Tru9I TTAA 3 cut(s) 407, 704, 1052
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 5 cut(s) 64, 194, 250, 1109, 1375
TseI GCWGC 9 cut(s) 37, 476, 947, 950, 953, 1001, 1022, 1280, 1383
Tsp45I GTSAC 5 cut(s) 64, 194, 250, 1109, 1375
TspDTI ATGAA 4 cut(s) 151, 256, 849, 1292
TspRI CASTG 1 cut(s) 1114
VspI ATTAAT 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 996
XmiI GTMKAC 1 cut(s) 1017
XmnI GAANNNNTTC 2 cut(s) 420, 1088
XspI CTAG 2 cut(s) 30, 219
ZrmI AGTACT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.