Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Reverse (-)

30742597 .. 30743682

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCGAAGTGGACGCGAAGGTTCTAACATGGGGTTCTTTCTTCCAAGAAGTGAAGAGGTTGTGTAACATAGCAGGACCCATGATTGCTGTGATTCTATCTCAGAACTTGTTGCGGGTCAGTTCAATGATGATGGTTCGTCACCTGGGTGAGCTTGCTCTCTCTATCTCCTCCCTAGCCCTCCCCCTCTCTGGGGTCACCGGCTTTAGTCTTTTTCTAGGAATGGCTAGTACACCGGAAACTTTATGTGGGCAAGCATATGGAGCTGAGCGATATCAGAAACTTGGACTCCGTACCTACACTGCGATATTTTCTCTCACCTTAGTTTGTCTTCCTTTATCTTTGGTATGGATATATATGGAGAAGTTACTGATTCTCATTGGTCAAGACCCTGTGATTTCTCGTGAAGCTGGCAAATTCACAATCTGGCTTCTTCCAGCTCTGTTCAACTTCGCCGTCCTTCAACCACTCATTAGATACTTTCAGGCACAAAGTTTGATAATACCTATGCTCATAAGCTCTGTCACGACCCTTTTGTTCCATATTCCAATCTCTTGGGTTCTACTGAATGTGATTTTACTTGGATTATACATGAAGTTTTCTTCTGCCTGTTCAAAAACCCGAGCTCCAATTTCTAAGGAGCTATTTCATGGAATGGGAGAGTTCTTTCACTTTGCAATCCCTTCTGCACTAATGCTTTGCCTTGAGTGGTGGTCATTTGAGCTGCTTATCTTGCTGTCTGGGCTTTTACCAAATCCAGCTCTTGAAACTTCAGTTCTGTCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

263

Amino Acids

29.08

Weight (kDa)

8.28

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	2 cut(s)	232, 295
AfiI	CCNNNNNNNGG	3 cut(s)	191, 192, 193
AgsI	TTSAA	5 cut(s)	126, 448, 464, 615, 767
AjnI	CCWGG	1 cut(s)	144
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	9 cut(s)	154, 266, 410, 440, 519, 626, 643, 724, 761
AluI	AGCT	9 cut(s)	154, 266, 410, 440, 519, 626, 643, 724, 761
Alw21I	GWGCWC	1 cut(s)	628
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	724
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	4 cut(s)	134, 161, 190, 310
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	628
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	711
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	3 cut(s)	176, 218, 228
BisI	GCNGC	1 cut(s)	725
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	726
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 610, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 192, 193
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	191, 192, 193
BseMII	CTCAG	2 cut(s)	116, 258
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	711
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	201, 236
BslI	CCNNNNNNNGG	3 cut(s)	191, 192, 193
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	115, 259
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	156, 255, 412
BstDEI	CTNAG	4 cut(s)	102, 267, 322, 636
BstEII	GGTNACC	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 733, 742
BstNI	CCWGG	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	711
BstV2I	GAAGAC	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	156, 255, 412
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	231, 294
CviAII	CATG	4 cut(s)	30, 82, 592, 650
CviQI	GTAC	2 cut(s)	231, 294
DdeI	CTNAG	4 cut(s)	102, 267, 322, 636
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	621
Eco91I	GGTNACC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	628
FaeI	CATG	4 cut(s)	33, 85, 595, 653
FatI	CATG	4 cut(s)	29, 81, 591, 649
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	3 cut(s)	176, 218, 228
GluI	GCNGC	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	201, 236
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	33, 85, 595, 653
HinfI	GANTC	3 cut(s)	94, 288, 373
HpaII	CCGG	2 cut(s)	201, 236
HphI	GGTGA	4 cut(s)	134, 161, 190, 310
Hpy166II	GTNNAC	2 cut(s)	13, 233
Hpy188I	TCNGA	2 cut(s)	105, 279
Hpy188III	TCNNGA	4 cut(s)	386, 404, 526, 764
Hpy8I	GTNNAC	2 cut(s)	13, 233
HpyAV	CCTTC	3 cut(s)	13, 470, 693
HpyCH4V	TGCA	2 cut(s)	677, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 733, 742
HpyF3I	CTNAG	4 cut(s)	102, 267, 322, 636
Hsp92II	CATG	4 cut(s)	33, 85, 595, 653
LmnI	GCTCC	3 cut(s)	263, 631, 640
Lsp1109I	GCAGC	1 cut(s)	711
MaeI	CTAG	3 cut(s)	176, 218, 228
MaeIII	GTNAC	5 cut(s)	65, 140, 196, 366, 523
MboII	GAAGA	5 cut(s)	34, 67, 323, 425, 594
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	2 cut(s)	416, 630
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	51, 181, 191, 197
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	201, 236
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	263, 733, 742
NdeI	CATATG	1 cut(s)	259
NlaIII	CATG	4 cut(s)	33, 85, 595, 653
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	140, 196, 523
OliI	CACNNNNGTG	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	94, 373
PkrI	GCNGC	1 cut(s)	726
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
RsaI	GTAC	2 cut(s)	232, 295
RsaNI	GTAC	2 cut(s)	231, 294
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	628
SatI	GCNGC	1 cut(s)	725
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	2 cut(s)	416, 630
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	3 cut(s)	176, 218, 228
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	144
TasI	AATT	2 cut(s)	416, 630
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	94, 373
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	140, 196, 523
TseI	GCWGC	1 cut(s)	724
Tsp45I	GTSAC	3 cut(s)	140, 196, 523
TspDTI	ATGAA	2 cut(s)	608, 638
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	3 cut(s)	176, 218, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.