Prupe.1G320400_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
30744180 .. 30749160
4981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G320400.1

Sequence Viewer

Length: 1515 bp
ATGGCTGACTCAAACATGGAAGAGAGCTTGTTATTGCCAAAATATAGAGAAGATGAACAACAAAGGAATAAAAGCAGTAGCGATTCAAGTGCTTCTACTCTAATGACATGGGGTTCTTTCTTTGAAGAAGTGAAGAGGCTGGGTTGCATAGCAGGGCCTATGGTTGCTGTGATTCTATCTCAGTACTTGTTGCAGGTCATTTCAATGATGATGGTTGGTCACCTGAGCGAGCTTGCTCTCTCTAGCACCGCCATAGCCATCTCCCTTTCTGGGGTCACCGGCTTTAGCCTTTTTTTAGGAATGGCTAGTGCCCTGGAAACTTTATGTGGGCAAGCATATGGAGCAAAGCAATATCAGAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGCCTACCTTTATCTTTGATATGGATATATATGGAGAAGATACTGATTTTCATAGGTCAAGACCCTGTAATTTCTCATGAAGCTGGCAAATTCACAACCTGGCTTCTTCCTGCTCTGTTTGCTTATGCCACTCTTCAACCACTCATTAGGTACTTTCAGACACAAAGCTTGATAATTCCCATGCTTATAAGCTCTTTCGCCATCCTATTGTTCCACATTCCTCTCTGTTGGATTCTAGTATTCAAGTCCGGATTGGATAACCTTGGAGGAGCATTAGCAATCAGTATTTCCTATTGGTTAAATGTGATTTTGCTGGGGTTATACATGAAGTTTTCCTCTGCCTGTTCAAAAACCCGAGCTCCAATTTCTAAGGAGATATTCCAAGGAATTGGAGAGTTCTTTCGCTTTGCTGTCCCTTCTGCAATAATGATATGCCTTGAGTGGTGGTCATTTGAGCTGCTCATCTTACTGTCTGGCCTTTTACCAAATCCGGCTCTTGAAACTTCAGTTCTGTCTGTATGTCTTCAGACGATTTCAACACTATATGCAATACCATATGGGTTTGGTGCTGCAGCAAGTACTAGAGTGTCAAATGAACTAGGAGCTGGTAATCCACAAGGTGCCCGTGTAGCTACTTGTGCTGCGATGTTTCTTGCAGTTACTGAGACGAGTATAATAACCACAACTCTCTTTGCCTGTCGGAATGTATTTGGTTACACCTTTAGCAATGAGAAAGAAGTCATCGATTACGTCACAACCATGGCTCCTCTAGTTTGCTTGTCTGTTATACTAGACAGCTTGCAAGGGGTCCTTTCAGGTATTGCTAGAGGAACTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATCTTTGTGGAATTCCAGTTGCTGCCACAATGGCTTTCTGGGTACAGTTAAGAGGAAGGGGCCTTTGGATTGGAATACAAGTTGGTTCTTTTGTGCAAACCATACTGCTATCTTTTGTAACAAGTTGTACAAATTGGGAAAAGCAGGCAAGTAAGGCAAGGGAGAGGATATTTGAGGGAAGGCCTCCAGAACTTAATGGATTGTGCGACAAGGCAGAAAGTAATGAGTTTTGA

Protein Analysis

505

Amino Acids

55.16

Weight (kDa)

5.92

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 1025
AccIII TCCGGA 1 cut(s) 653
AciI CCGC 1 cut(s) 249
AcsI RAATTY 2 cut(s) 494, 1293
AcuI CTGAAG 2 cut(s) 894, 914
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 5 cut(s) 185, 557, 985, 1326, 1411
AfiI CCNNNNNNNGG 2 cut(s) 270, 271
AgsI TTSAA 9 cut(s) 87, 125, 204, 371, 542, 649, 753, 905, 942
AjnI CCWGG 2 cut(s) 312, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 1330, 1362
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 1 cut(s) 1064
AlwNI CAGNNNCTG 2 cut(s) 1067, 1304
Ama87I CYCGRG 1 cut(s) 759
Aor13HI TCCGGA 1 cut(s) 653
AoxI GGCC 4 cut(s) 155, 880, 1342, 1463
ApeKI GCWGC 6 cut(s) 862, 974, 977, 1046, 1246, 1304
ApoI RAATTY 2 cut(s) 494, 1293
AspS9I GGNCC 3 cut(s) 155, 1213, 1342
AsuHPI GGTGA 2 cut(s) 212, 268
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 1213
BaeGI GKGCMC 2 cut(s) 313, 1030
BanI GGYRCC 1 cut(s) 1025
BanII GRGCYC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 6 cut(s) 849, 961, 989, 1033, 1258, 1291
BccI CCATC 3 cut(s) 205, 266, 614
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 314, 505
BcoDI GTCTC 1 cut(s) 1064
BfaI CTAG 8 cut(s) 243, 306, 641, 987, 1004, 1175, 1196, 1230
BfmI CTRYAG 1 cut(s) 975
BfuAI ACCTGC 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 1313
BisI GCNGC 6 cut(s) 863, 975, 978, 1047, 1247, 1305
BlsI GCNGC 6 cut(s) 864, 976, 979, 1048, 1248, 1306
BmcAI AGTACT 2 cut(s) 185, 985
Bme1390I CCNGG 2 cut(s) 314, 505
Bme18I GGWCC 1 cut(s) 1213
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 155, 1213, 1342
BmiI GGNNCC 4 cut(s) 1027, 1170, 1214, 1343
BmrFI CCNGG 2 cut(s) 314, 505
BmrI ACTGGG 1 cut(s) 1248
BmuI ACTGGG 1 cut(s) 1248
BpiI GAAGAC 1 cut(s) 920
BpmI CTGGAG 1 cut(s) 1452
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 863
Bsa29I ATCGAT 1 cut(s) 1149
BsaJI CCNNGG 5 cut(s) 312, 667, 787, 1164, 1270
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 748, 778, 1153, 1183
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 271
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 1243, 1298
Bse3DI GCAATG 1 cut(s) 1138
BseAI TCCGGA 1 cut(s) 653
BseBI CCWGG 2 cut(s) 314, 505
BseCI ATCGAT 1 cut(s) 1149
BseDI CCNNGG 5 cut(s) 312, 667, 787, 1164, 1270
BseGI GGATG 1 cut(s) 606
BseLI CCNNNNNNNGG 2 cut(s) 270, 271
BseMI GCAATG 1 cut(s) 1138
BseMII CTCAG 3 cut(s) 194, 215, 1059
BseNI ACTGG 2 cut(s) 1243, 1298
BseRI GAGGAG 2 cut(s) 687, 1161
BseSI GKGCMC 2 cut(s) 313, 1030
BseXI GCAGC 6 cut(s) 849, 961, 989, 1033, 1258, 1291
BseYI CCCAGC 2 cut(s) 139, 718
BshFI GGCC 4 cut(s) 157, 882, 1344, 1465
BshNI GGYRCC 1 cut(s) 1025
BshVI ATCGAT 1 cut(s) 1149
BsiHKAI GWGCWC 1 cut(s) 766
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 3 cut(s) 279, 654, 896
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 270, 271
BsmAI GTCTC 1 cut(s) 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmFI GGGAC 1 cut(s) 803
BsnI GGCC 4 cut(s) 157, 882, 1344, 1465
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 3 cut(s) 313, 766, 1030
Bsp13I TCCGGA 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 1409
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 1 cut(s) 249
BspANI GGCC 4 cut(s) 157, 882, 1344, 1465
BspCNI CTCAG 3 cut(s) 193, 216, 1060
BspDI ATCGAT 1 cut(s) 1149
BspEI TCCGGA 1 cut(s) 653
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 1027, 1170, 1214, 1343
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 1138
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 1409
BsrI ACTGG 2 cut(s) 1243, 1298
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 312, 667, 787, 1164, 1270
BssT1I CCWWGG 4 cut(s) 667, 787, 1164, 1270
Bst2UI CCWGG 2 cut(s) 314, 505
Bst4CI ACNGT 2 cut(s) 876, 1329
Bst6I CTCTTC 3 cut(s) 15, 128, 543
BstAUI TGTACA 1 cut(s) 1409
BstC8I GCNNGC 6 cut(s) 230, 234, 333, 490, 1205, 1428
BstDEI CTNAG 5 cut(s) 180, 224, 400, 774, 1068
BstDSI CCRYGG 1 cut(s) 1164
BstEII GGTNACC 2 cut(s) 218, 274
BstF5I GGATG 1 cut(s) 606
BstMAI GTCTC 1 cut(s) 1064
BstMWI GCNNNNNNNGC 6 cut(s) 341, 524, 1034, 1043, 1313, 1436
BstNI CCWGG 2 cut(s) 314, 505
BstPI GGTNACC 2 cut(s) 218, 274
BstSCI CCNGG 2 cut(s) 312, 503
BstSFI CTRYAG 1 cut(s) 975
BstSLI GKGCMC 2 cut(s) 313, 1030
BstV1I GCAGC 6 cut(s) 849, 961, 989, 1033, 1258, 1291
BstV2I GAAGAC 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 1149
BsuRI GGCC 4 cut(s) 157, 882, 1344, 1465
BsuTUI ATCGAT 1 cut(s) 1149
BtgI CCRYGG 1 cut(s) 1164
BtgZI GCGATG 1 cut(s) 1064
BtsCI GGATG 1 cut(s) 606
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 6 cut(s) 230, 234, 333, 490, 1205, 1428
CaiI CAGNNNCTG 2 cut(s) 1067, 1304
CciI TCATGA 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 155, 1213, 1342
ClaI ATCGAT 1 cut(s) 1149
Csp6I GTAC 5 cut(s) 184, 556, 984, 1325, 1410
CviAII CATG 6 cut(s) 16, 108, 482, 586, 730, 1165
CviQI GTAC 5 cut(s) 184, 556, 984, 1325, 1410
DdeI CTNAG 5 cut(s) 180, 224, 400, 774, 1068
DraIII CACNNNGTG 1 cut(s) 1025
Eam1104I CTCTTC 3 cut(s) 15, 128, 543
EarI CTCTTC 3 cut(s) 15, 128, 543
Ecl136II GAGCTC 1 cut(s) 764
Eco130I CCWWGG 4 cut(s) 667, 787, 1164, 1270
Eco147I AGGCCT 1 cut(s) 1465
Eco24I GRGCYC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 1213
Eco53kI GAGCTC 1 cut(s) 764
Eco57I CTGAAG 2 cut(s) 894, 914
Eco88I CYCGRG 1 cut(s) 759
Eco91I GGTNACC 2 cut(s) 218, 274
EcoICRI GAGCTC 1 cut(s) 764
EcoO109I RGGNCCY 3 cut(s) 155, 1213, 1342
EcoO65I GGTNACC 2 cut(s) 218, 274
EcoRI GAATTC 1 cut(s) 1293
EcoRII CCWGG 2 cut(s) 312, 503
EcoT14I CCWWGG 4 cut(s) 667, 787, 1164, 1270
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 4 cut(s) 667, 787, 1164, 1270
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 6 cut(s) 19, 111, 485, 589, 733, 1168
FalI AAGNNNNNCTT 2 cut(s) 1200, 1232
FaqI GGGAC 1 cut(s) 803
FatI CATG 6 cut(s) 15, 107, 481, 585, 729, 1164
FauNDI CATATG 2 cut(s) 337, 961
Fnu4HI GCNGC 6 cut(s) 863, 975, 978, 1047, 1247, 1305
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 6 cut(s) 863, 975, 978, 1047, 1247, 1305
FspBI CTAG 8 cut(s) 243, 306, 641, 987, 1004, 1175, 1196, 1230
GluI GCNGC 6 cut(s) 863, 975, 978, 1047, 1247, 1305
GsaI CCCAGC 2 cut(s) 143, 722
GsuI CTGGAG 1 cut(s) 1452
HaeIII GGCC 4 cut(s) 157, 882, 1344, 1465
HapII CCGG 3 cut(s) 279, 654, 896
Hin1II CATG 6 cut(s) 19, 111, 485, 589, 733, 1168
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 4 cut(s) 8, 83, 172, 637
HpaII CCGG 3 cut(s) 279, 654, 896
HphI GGTGA 2 cut(s) 212, 268
Hpy188I TCNGA 4 cut(s) 357, 564, 933, 1107
Hpy188III TCNNGA 5 cut(s) 464, 482, 654, 902, 1469
HpyAV CCTTC 3 cut(s) 831, 1332, 1455
HpyCH4III ACNGT 2 cut(s) 876, 1329
HpyCH4IV ACGT 1 cut(s) 1155
HpyCH4V TGCA 8 cut(s) 147, 193, 827, 953, 977, 1061, 1207, 1378
HpyF10VI GCNNNNNNNGC 6 cut(s) 341, 524, 1034, 1043, 1313, 1436
HpyF3I CTNAG 5 cut(s) 180, 224, 400, 774, 1068
HpySE526I ACGT 1 cut(s) 1155
Hsp92II CATG 6 cut(s) 19, 111, 485, 589, 733, 1168
Kpn2I TCCGGA 1 cut(s) 653
LmnI GCTCC 6 cut(s) 341, 674, 769, 1007, 1174, 1274
Lsp1109I GCAGC 6 cut(s) 849, 961, 989, 1033, 1258, 1291
MaeI CTAG 8 cut(s) 243, 306, 641, 987, 1004, 1175, 1196, 1230
MaeII ACGT 1 cut(s) 1155
MaeIII GTNAC 6 cut(s) 218, 274, 1063, 1118, 1156, 1399
MboII GAAGA 8 cut(s) 32, 62, 137, 145, 454, 503, 530, 920
MhlI GDGCHC 3 cut(s) 313, 766, 1030
MluCI AATT 7 cut(s) 474, 494, 579, 768, 792, 1293, 1414
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 614, 1085
MroI TCCGGA 1 cut(s) 653
MseI TTAA 3 cut(s) 704, 1331, 1476
MslI CAYNNNNRTG 2 cut(s) 203, 1163
MspI CCGG 3 cut(s) 279, 654, 896
MspR9I CCNGG 2 cut(s) 314, 505
MvaI CCWGG 2 cut(s) 314, 505
MwoI GCNNNNNNNGC 6 cut(s) 341, 524, 1034, 1043, 1313, 1436
NcoI CCATGG 1 cut(s) 1164
NdeI CATATG 2 cut(s) 337, 961
NlaIII CATG 6 cut(s) 19, 111, 485, 589, 733, 1168
NlaIV GGNNCC 4 cut(s) 1027, 1170, 1214, 1343
NmuCI GTSAC 3 cut(s) 218, 274, 1156
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 1465
PfeI GAWTC 3 cut(s) 83, 172, 637
PkrI GCNGC 6 cut(s) 864, 976, 979, 1048, 1248, 1306
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PpuMI RGGWCCY 1 cut(s) 1213
PsiI TTATAA 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 1213
Psp6I CCWGG 2 cut(s) 312, 503
PspEI GGTNACC 2 cut(s) 218, 274
PspFI CCCAGC 2 cut(s) 139, 718
PspGI CCWGG 2 cut(s) 312, 503
PspN4I GGNNCC 4 cut(s) 1027, 1170, 1214, 1343
PspPI GGNCC 3 cut(s) 155, 1213, 1342
PspPPI RGGWCCY 1 cut(s) 1213
PstI CTGCAG 1 cut(s) 979
PstNI CAGNNNCTG 2 cut(s) 1067, 1304
RsaI GTAC 5 cut(s) 185, 557, 985, 1326, 1411
RsaNI GTAC 5 cut(s) 184, 556, 984, 1325, 1410
RseI CAYNNNNRTG 2 cut(s) 203, 1163
SacI GAGCTC 1 cut(s) 766
SaqAI TTAA 3 cut(s) 704, 1331, 1476
SatI GCNGC 6 cut(s) 863, 975, 978, 1047, 1247, 1305
Sau96I GGNCC 3 cut(s) 155, 1213, 1342
ScaI AGTACT 2 cut(s) 185, 985
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 314, 505
SduI GDGCHC 3 cut(s) 313, 766, 1030
SfcI CTRYAG 1 cut(s) 975
SinI GGWCC 1 cut(s) 1213
SmiMI CAYNNNNRTG 2 cut(s) 203, 1163
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse9I AATT 7 cut(s) 474, 494, 579, 768, 792, 1293, 1414
SseBI AGGCCT 1 cut(s) 1465
SsiI CCGC 1 cut(s) 249
SspMI CTAG 8 cut(s) 243, 306, 641, 987, 1004, 1175, 1196, 1230
SstI GAGCTC 1 cut(s) 766
StuI AGGCCT 1 cut(s) 1465
StyD4I CCNGG 2 cut(s) 312, 503
StyI CCWWGG 4 cut(s) 667, 787, 1164, 1270
TaaI ACNGT 2 cut(s) 876, 1329
TaiI ACGT 1 cut(s) 1158
TaqI TCGA 1 cut(s) 1149
TasI AATT 7 cut(s) 474, 494, 579, 768, 792, 1293, 1414
TatI WGTACW 3 cut(s) 183, 983, 1409
TfiI GAWTC 3 cut(s) 83, 172, 637
Tru1I TTAA 3 cut(s) 704, 1331, 1476
Tru9I TTAA 3 cut(s) 704, 1331, 1476
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 3 cut(s) 218, 274, 1156
TseI GCWGC 6 cut(s) 862, 974, 977, 1046, 1246, 1304
Tsp45I GTSAC 3 cut(s) 218, 274, 1156
TspDTI ATGAA 5 cut(s) 69, 445, 498, 746, 1014
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 1213
XapI RAATTY 2 cut(s) 494, 1293
XspI CTAG 8 cut(s) 243, 306, 641, 987, 1004, 1175, 1196, 1230
ZrmI AGTACT 2 cut(s) 185, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.