Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

2461526 .. 2462746

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1034300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCTACATAACTGGTTTGCTTCTCTTGCTGTCATATTGGCTGTATACAACCACTCTTTGCAAAGGCGGCCACGGCGATTGAGTTCCACAGCAAAAGACACAGCCATGGAAGTGAGCTTGCTATTGTCAGATTACAGTAGAGAGCAACAAAGAAGAAGTAGAAATTCAAGTAGTAGTAGTAGTAGTTGTCTGACATGGGGTTCTTTTTTCGAAGAAGTGAAGAGGTTGGGATGCATTGCAGGACCCATGGTTGCTGTGGTTCTTTCCCACTTCATGCTGCGGTTCATTTCAGTGACGATGGTTGGTCACCTGGGTGAACTTGCTCTCTCTAGCTCCTCCATTGCTTTCTCCCTCGCCGGCATCACCGGGTTCAGTCTTTTTACAGGAGTGGCAAGTGCACTGGAAACTCTGTGTGGGCAAGCATATGGAGCAGAACAATATCAGAAACTTGGACTTGAAACTTACACTGCCATATTTTCTCTCAACTTAGTTTGTCTTCCCTTATCTTTGATATGGATTTATATGGAGGAGATACTGATTTTCACCGGTCAAGACCCTGTGATTTCTCATGAAGCCGGCAAGTTCATAATCTGGCTTATTCCTGCTCTATTTGCTTATGCAACTCTTCAACCACTCGTTCGGTACTTCCAAACTCAGAGTTTATTAATGCCTATGGTCATAAGCTCTTTCGCCACTCTTTTATTCCATATTCCTCTCTCCTGGGTTCTAATATTCAAGTCTGGATTGGATCACCTTGGAGGATCATTAGCAATCGGCGTTTCCTACTGGTTCAATGTTATTTTTCTTTGGTTATACATGAAGTTTTCCCCTGCCTGTTCAAAAAGTCGAGTTCCAATTTCAAAGGAGCTATTGCATAGAATCAGAGAGTTCCTTCGATTTGCCATCCCTTCTGCAGTAATGATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

310

Amino Acids

34.63

Weight (kDa)

9.13

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	82 - 242	3.1e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	67, 280
AclWI	GGATC	2 cut(s)	756, 769
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	644
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	7 cut(s)	168, 458, 629, 736, 793, 840, 861
AjnI	CCWGG	2 cut(s)	309, 719
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	117, 333, 684, 868
AluI	AGCT	4 cut(s)	117, 333, 684, 868
Alw21I	GWGCWC	1 cut(s)	400
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	756, 769
AoxI	GGCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	163
AseI	ATTAAT	1 cut(s)	665
AsiGI	ACCGGT	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	5 cut(s)	299, 326, 355, 535, 743
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	2 cut(s)	292, 911
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	311, 721
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	2 cut(s)	68, 278
BlsI	GCNGC	2 cut(s)	69, 279
Bme1390I	CCNGG	3 cut(s)	311, 367, 721
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	311, 367, 721
BmsI	GCATC	2 cut(s)	221, 369
BpiI	GAAGAC	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	6 cut(s)	71, 105, 246, 310, 720, 754
BsaWI	WCCGGW	1 cut(s)	545
Bse118I	RCCGGY	3 cut(s)	356, 545, 575
Bse1I	ACTGG	3 cut(s)	17, 405, 791
Bse3DI	GCAATG	2 cut(s)	234, 339
BseBI	CCWGG	2 cut(s)	311, 721
BseDI	CCNNGG	6 cut(s)	71, 105, 246, 310, 720, 754
BseGI	GGATG	2 cut(s)	236, 903
BseMI	GCAATG	2 cut(s)	234, 339
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	3 cut(s)	17, 405, 791
BseRI	GAGGAG	2 cut(s)	325, 542
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	4 cut(s)	357, 366, 546, 576
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	748, 761
Bsp19I	CCATGG	2 cut(s)	105, 246
BspACI	CCGC	2 cut(s)	67, 280
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	2 cut(s)	756, 769
BspT104I	TTCGAA	1 cut(s)	210
BsrDI	GCAATG	2 cut(s)	234, 339
BsrFI	RCCGGY	3 cut(s)	356, 545, 575
BsrI	ACTGG	3 cut(s)	17, 405, 791
BssAI	RCCGGY	3 cut(s)	356, 545, 575
BssECI	CCNNGG	6 cut(s)	71, 105, 246, 310, 720, 754
BssMI	GATC	2 cut(s)	748, 761
BssNAI	GTATAC	1 cut(s)	46
BssT1I	CCWWGG	3 cut(s)	105, 246, 754
Bst1107I	GTATAC	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	311, 721
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	215, 630
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	119, 358, 420, 577
BstDEI	CTNAG	2 cut(s)	487, 654
BstDSI	CCRYGG	3 cut(s)	71, 105, 246
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	236, 903
BstKTI	GATC	2 cut(s)	751, 764
BstMBI	GATC	2 cut(s)	748, 761
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 67, 73, 428, 611
BstNI	CCWGG	2 cut(s)	311, 721
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	309, 365, 719
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	70
BtgI	CCRYGG	3 cut(s)	71, 105, 246
BtsCI	GGATG	2 cut(s)	236, 903
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	297, 398, 465
Cac8I	GCNNGC	4 cut(s)	119, 358, 420, 577
CciI	TCATGA	1 cut(s)	568
Cfr10I	RCCGGY	3 cut(s)	356, 545, 575
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	643
CspAI	ACCGGT	1 cut(s)	545
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	6 cut(s)	106, 195, 247, 274, 569, 817
CviJI	RGCY	9 cut(s)	41, 70, 104, 117, 333, 575, 595, 684, 868
CviKI_1	RGCY	9 cut(s)	41, 70, 104, 117, 333, 575, 595, 684, 868
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	487, 654
DpnI	GATC	2 cut(s)	750, 763
DpnII	GATC	2 cut(s)	748, 761
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	215, 630
EarI	CTCTTC	2 cut(s)	215, 630
Eco130I	CCWWGG	3 cut(s)	105, 246, 754
Eco47I	GGWCC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	309, 719
EcoT14I	CCWWGG	3 cut(s)	105, 246, 754
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	3 cut(s)	105, 246, 754
FaeI	CATG	6 cut(s)	109, 198, 250, 277, 572, 820
FatI	CATG	6 cut(s)	105, 194, 246, 273, 568, 816
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	68, 278
FokI	GGATG	2 cut(s)	243, 890
Fsp4HI	GCNGC	2 cut(s)	68, 278
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	68, 278
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	4 cut(s)	357, 366, 546, 576
Hin1II	CATG	6 cut(s)	109, 198, 250, 277, 572, 820
HinfI	GANTC	1 cut(s)	879
HpaII	CCGG	4 cut(s)	357, 366, 546, 576
HphI	GGTGA	5 cut(s)	299, 326, 355, 535, 743
Hpy166II	GTNNAC	3 cut(s)	46, 317, 398
Hpy188I	TCNGA	5 cut(s)	130, 192, 444, 657, 884
Hpy188III	TCNNGA	3 cut(s)	551, 569, 741
Hpy8I	GTNNAC	3 cut(s)	46, 317, 398
HpyAV	CCTTC	2 cut(s)	902, 918
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	7 cut(s)	61, 234, 239, 398, 620, 874, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 67, 73, 428, 611
HpyF3I	CTNAG	2 cut(s)	487, 654
Hsp92II	CATG	6 cut(s)	109, 198, 250, 277, 572, 820
KroI	GCCGGC	2 cut(s)	356, 575
KroNI	GCCGGC	2 cut(s)	358, 577
Kzo9I	GATC	2 cut(s)	748, 761
LmnI	GCTCC	3 cut(s)	338, 428, 865
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	2 cut(s)	221, 369
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	292, 305
MalI	GATC	2 cut(s)	750, 763
MboI	GATC	2 cut(s)	748, 761
MboII	GAAGA	5 cut(s)	165, 224, 232, 488, 617
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	163, 855
MnlI	CCTC	6 cut(s)	216, 346, 362, 520, 723, 752
Mph1103I	ATGCAT	1 cut(s)	236
MroNI	GCCGGC	2 cut(s)	356, 575
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	4 cut(s)	104, 110, 290, 312
MspI	CCGG	4 cut(s)	357, 366, 546, 576
MspR9I	CCNGG	3 cut(s)	311, 367, 721
MvaI	CCWGG	2 cut(s)	311, 721
MwoI	GCNNNNNNNGC	5 cut(s)	26, 67, 73, 428, 611
NaeI	GCCGGC	2 cut(s)	358, 577
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	2 cut(s)	105, 246
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	748, 761
NgoMIV	GCCGGC	2 cut(s)	356, 575
NlaIII	CATG	6 cut(s)	109, 198, 250, 277, 572, 820
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	292, 305
NsiI	ATGCAT	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	312
PagI	TCATGA	1 cut(s)	568
PdiI	GCCGGC	2 cut(s)	358, 577
PfeI	GAWTC	1 cut(s)	879
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	69, 279
PpuMI	RGGWCCY	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	309, 719
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	309, 719
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	916
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	4 cut(s)	104, 110, 290, 312
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	2 cut(s)	68, 278
Sau3AI	GATC	2 cut(s)	748, 761
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	311, 367, 721
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	119, 227, 312, 335, 686, 756, 870
SfaNI	GCATC	2 cut(s)	221, 369
SfcI	CTRYAG	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	4 cut(s)	104, 110, 290, 312
Sse9I	AATT	2 cut(s)	163, 855
SsiI	CCGC	2 cut(s)	67, 280
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	309, 365, 719
StyI	CCWWGG	3 cut(s)	105, 246, 754
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	210, 847, 895
TasI	AATT	2 cut(s)	163, 855
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	879
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	3 cut(s)	297, 405, 472
TseFI	GTSAC	2 cut(s)	292, 305
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	2 cut(s)	292, 305
TspDTI	ATGAA	5 cut(s)	262, 274, 574, 585, 833
TspRI	CASTG	3 cut(s)	297, 405, 472
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	665
XapI	RAATTY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.