Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Reverse (-)

44485252 .. 44486145

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGGGTGACCACCTATACAGATGAGTACACTTCCCCAATCCCTCCATGCAGGTTGTTCAAGGCATTGGTCCTTGAGGCTGACATCCTCGTTCCAAAGCTCATGCCGGAGGCTCTTAAGAGCATCGACACCATCCAAGGTGACGGAAGAGCAGGAAGCATCAAGCAGATCAACTTCGCCGAAGGCAGCCAGATCATTTCTGTGCGAAATCGGGTTGATGAGGTGGATGACGAGAACTATGTGTATAATTACACTTTGATTGATGGAGATATTTCAGTAATGGAGAAACTTGAGTTTATTTCTTATGAAGTTAAGTTTGAGGCTACACCAGAAGGTGGCAGTAAGAACAAGATGGTGAGCAAGTACCACACCAAAGGTGACATTGTGCTCAATGAGGAAGACATAAAGGCTGGCAGAGAAAAGGCCTTGGGGATGTACAAAGTTGTGGAAGCCTACCTCCTCCAAAACCCAGATATCTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

4.67

Isoelectric Point (pI)

21.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 156	1.2e-20	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	335
AfaI	GTAC	3 cut(s)	29, 365, 437
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	4 cut(s)	19, 152, 367, 389
AvaII	GGWCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	3 cut(s)	140, 257, 346
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmsI	GCATC	2 cut(s)	132, 168
BpiI	GAAGAC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	95, 311
BsaJI	CCNNGG	2 cut(s)	136, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	136, 426
BseGI	GGATG	4 cut(s)	84, 132, 232, 438
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	168, 192
BspANI	GGCC	1 cut(s)	425
BspMI	ACCTGC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	136, 426
BssMI	GATC	2 cut(s)	168, 192
BssT1I	CCWWGG	2 cut(s)	136, 426
Bst6I	CTCTTC	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	412
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	4 cut(s)	84, 132, 232, 438
BstKTI	GATC	2 cut(s)	171, 195
BstMBI	GATC	2 cut(s)	168, 192
BstPI	GGTNACC	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	4 cut(s)	84, 132, 232, 438
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	28, 364, 436
CviAII	CATG	2 cut(s)	48, 103
CviJI	RGCY	8 cut(s)	80, 100, 113, 189, 323, 410, 425, 452
CviKI_1	RGCY	8 cut(s)	80, 100, 113, 189, 323, 410, 425, 452
CviQI	GTAC	3 cut(s)	28, 364, 436
DpnI	GATC	2 cut(s)	170, 194
DpnII	GATC	2 cut(s)	168, 192
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	136, 426
Eco147I	AGGCCT	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	136, 426
ErhI	CCWWGG	2 cut(s)	136, 426
FaeI	CATG	2 cut(s)	51, 106
FaiI	YATR	8 cut(s)	18, 49, 104, 240, 246, 306, 404, 480
FatI	CATG	2 cut(s)	47, 102
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	4 cut(s)	71, 119, 239, 445
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	2 cut(s)	51, 106
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	4 cut(s)	19, 152, 367, 389
Hpy166II	GTNNAC	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	176, 326
HpyCH4V	TGCA	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	51, 106
Kzo9I	GATC	2 cut(s)	168, 192
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	37, 120, 138, 203, 342, 396
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	132, 168
MaeIII	GTNAC	3 cut(s)	7, 140, 377
MalI	GATC	2 cut(s)	170, 194
MboI	GATC	2 cut(s)	168, 192
MboII	GAAGA	2 cut(s)	159, 410
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	9 cut(s)	54, 70, 98, 103, 214, 313, 388, 467, 470
MseI	TTAA	2 cut(s)	117, 312
MslI	CAYNNNNRTG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	168, 192
NlaIII	CATG	2 cut(s)	51, 106
NmuCI	GTSAC	3 cut(s)	7, 140, 377
PceI	AGGCCT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	70
RsaI	GTAC	3 cut(s)	29, 365, 437
RsaNI	GTAC	3 cut(s)	28, 364, 436
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	117, 312
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	168, 192
Sau96I	GGNCC	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	8 cut(s)	17, 56, 102, 142, 225, 337, 379, 459
SfaNI	GCATC	2 cut(s)	132, 168
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	3 cut(s)	74, 116, 290
SmoI	CTYRAG	3 cut(s)	74, 116, 290
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	425
StuI	AGGCCT	1 cut(s)	425
StyI	CCWWGG	2 cut(s)	136, 426
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	247
TatI	WGTACW	2 cut(s)	27, 435
Tru1I	TTAA	2 cut(s)	117, 312
Tru9I	TTAA	2 cut(s)	117, 312
TseFI	GTSAC	3 cut(s)	7, 140, 377
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	3 cut(s)	7, 140, 377
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.