RLG00000006710

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
9865588 .. 9868362
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006710

Sequence Viewer

Length: 1467 bp
ATGGAAGAGGGATTATTATTACCAAGAGGCAAAGATCAAGTAGAGCAAAAAAAAGGGTCAGGCAGTACCAGTATTCTAACATGGTTTTTGTTCTTTGAAGAAGTGAAGAAGTTGGGTTGCATTGCAGGACCTATGGTTGCTGTGATTCTATCCCAGTACTTGTTGCAGATTGTTTCGATGATGATGGTTGGTCATCTCGGTGAGCTAGCTCTCTCTAGCACCGCCATAGCCATCTCTTTAGCCGGGGTCACTGGCTTTAGTCTTTTTTTAGGAATGGCTAGTGCACTTGAAACTTTATGTGGGCAAGCTTATGGAGCTAAGCAGTATCAGAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGTCTACCATTATCTTTGATATGGATATATATGGCGGATATACTGATATTCATGGGTCAAGATCCTTCAATTTCTCGTGAAGCTGGCAAATTCACAATTTGGCTTATTCCTGGTCTATTTGCTTATGCAACTCTTCAACCACTCATTAGATACTTTCAGACACAGAGTTTAGTAATTCCTATGTTCATAAGCTCTTGCGCGACCCTTTTGTTCCATATTCCTCTCTGTTGGGTTCTAGTGTTCAAGTCTGGCCTTGCTAACTTGGGAGGAGCATTGGCAATCAGCATTTCATATTGGGTGAATGTGATTTTACTTGGAGTATACATGAAGTTTTCTTCTGCATGTTCAAAGACAAGAGCTCCCATTTCTAAGGAGGTATTCCAAGGAACTGGAGAGTTCTTTCGCTTTGCCGTCCCTTCTGCAGTAATGATATGCCTTGAGTGGTGGTCATTTGAGCTGCTTGTCTTGCTGTCTGGGCTTTTACCAAATCCTGCTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGACCATTTCGACACTCTATTCAATACCATATGGATTTGGTGCGGCAGCAAGCACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCCGAAGGTGCTCGTATAGCTACTTTCGCTGCCATGTTTCTTGCAGTCACAGAGGCAACCCTAACGACCACAACCCTCTTTTGCTGCAGCCATGTGTTTGGTTACCTCTTCAGCAATGAAGAAGAAGTCATCGATTATGTCAGAACAATGGCTCCTCTAGTTTGCCTGTCTGTTATACTAGACAGCTTGCAAGGGGTCCTTTCAGGTATTGCTAGAGGCTGTGGGTGGCAGCACATAGGAGCTTACATAAACCTTGGAGCATATTATCTATGTGGGATTCCAGTTGCTGCTACATTGGCTTTCTTGATACAACTAAGAGGAAGGGGCCTTTGGATTGGTATACAAGTTGGTGCTTTTGTGCAAACCACTCTGCTTGCTTTTGTAACAACTTGTACAGACTGGGAAATGCAGGCAAGTAAGGCAAGGGAGAGAATATTCGAGGGCAGCTTTCCGGTCAATAGTGGATTGTGCCACTAA

Protein Analysis

489

Amino Acids

52.95

Weight (kDa)

6.24

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 44 - 204 3.1e-32 MatE
MatE PF01554 265 - 427 3.8e-31 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 382, 699, 1330
AccII CGCG 1 cut(s) 578
AciI CCGC 3 cut(s) 222, 413, 947
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 867, 1084
AfaI GTAC 3 cut(s) 67, 158, 1384
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 1303, 1335
AloI GAACNNNNNNTCC 2 cut(s) 1126, 1158
Alw21I GWGCWC 3 cut(s) 286, 739, 1003
Alw26I GTCTC 1 cut(s) 905
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 1277
AoxI GGCC 2 cut(s) 628, 1315
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 8 cut(s) 835, 950, 1019, 1074, 1077, 1219, 1277, 1434
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 3 cut(s) 128, 1186, 1315
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 212, 688
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 2 cut(s) 128, 1186
BaeGI GKGCMC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 739
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 3 cut(s) 286, 739, 1003
BbvI GCAGC 8 cut(s) 822, 962, 1006, 1061, 1089, 1231, 1264, 1446
BccI CCATC 2 cut(s) 178, 239
BceAI ACGGC 1 cut(s) 773
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 905
BfaI CTAG 9 cut(s) 206, 216, 279, 614, 960, 977, 1148, 1169, 1203
BfmI CTRYAG 2 cut(s) 798, 1075
BisI GCNGC 9 cut(s) 836, 948, 951, 1020, 1075, 1078, 1220, 1278, 1435
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 9 cut(s) 837, 949, 952, 1021, 1076, 1079, 1221, 1279, 1436
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 244, 489
Bme18I GGWCC 2 cut(s) 128, 1186
BmgT120I GGNCC 3 cut(s) 128, 1186, 1315
BmiI GGNNCC 3 cut(s) 1143, 1187, 1316
BmrFI CCNGG 2 cut(s) 244, 489
BmrI ACTGGG 2 cut(s) 148, 1399
BmtI GCTAGC 1 cut(s) 209
BmuI ACTGGG 2 cut(s) 148, 1399
BpmI CTGGAG 2 cut(s) 789, 887
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 244
Bsa29I ATCGAT 1 cut(s) 1122
BsaJI CCNNGG 3 cut(s) 243, 760, 1243
BsaWI WCCGGW 1 cut(s) 1441
BsaXI ACNNNNNCTCC 4 cut(s) 721, 751, 1126, 1156
Bse1I ACTGG 6 cut(s) 69, 154, 256, 772, 1271, 1394
Bse3DI GCAATG 2 cut(s) 120, 1111
BseBI CCWGG 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 1122
BseDI CCNNGG 3 cut(s) 243, 760, 1243
BseMI GCAATG 2 cut(s) 120, 1111
BseNI ACTGG 6 cut(s) 69, 154, 256, 772, 1271, 1394
BseRI GAGGAG 2 cut(s) 660, 1134
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 8 cut(s) 822, 962, 1006, 1061, 1089, 1231, 1264, 1446
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 630, 1317
BshVI ATCGAT 1 cut(s) 1122
BsiHKAI GWGCWC 3 cut(s) 286, 739, 1003
BsiSI CCGG 2 cut(s) 243, 1442
BslFI GGGAC 1 cut(s) 776
BsmAI GTCTC 1 cut(s) 905
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 2 cut(s) 630, 1317
Bsp1286I GDGCHC 3 cut(s) 286, 739, 1003
Bsp1407I TGTACA 1 cut(s) 1382
Bsp143I GATC 2 cut(s) 34, 439
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 3 cut(s) 222, 413, 947
BspANI GGCC 2 cut(s) 630, 1317
BspDI ATCGAT 1 cut(s) 1122
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 3 cut(s) 1143, 1187, 1316
BspMAI CTGCAG 2 cut(s) 802, 1079
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 120, 1111
BsrGI TGTACA 1 cut(s) 1382
BsrI ACTGG 6 cut(s) 69, 154, 256, 772, 1271, 1394
BssECI CCNNGG 3 cut(s) 243, 760, 1243
BssMI GATC 2 cut(s) 34, 439
BssNAI GTATAC 2 cut(s) 700, 1331
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 760, 1243
Bst1107I GTATAC 2 cut(s) 700, 1331
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 489
Bst6I CTCTTC 2 cut(s) 516, 1103
BstAUI TGTACA 1 cut(s) 1382
BstC8I GCNNGC 8 cut(s) 207, 306, 463, 955, 985, 1178, 1365, 1401
BstDEI CTNAG 4 cut(s) 318, 373, 747, 1304
BstEII GGTNACC 1 cut(s) 1091
BstFNI CGCG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 2 cut(s) 37, 442
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 2 cut(s) 34, 439
BstMWI GCNNNNNNNGC 7 cut(s) 314, 844, 853, 1007, 1016, 1286, 1409
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 723
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 2 cut(s) 242, 487
BstSFI CTRYAG 2 cut(s) 798, 1075
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 8 cut(s) 822, 962, 1006, 1061, 1089, 1231, 1264, 1446
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 2 cut(s) 767, 1088
BstYI RGATCY 1 cut(s) 439
BstZ17I GTATAC 2 cut(s) 700, 1331
Bsu15I ATCGAT 1 cut(s) 1122
BsuRI GGCC 2 cut(s) 630, 1317
BsuTUI ATCGAT 1 cut(s) 1122
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 249, 351, 891
Cac8I GCNNGC 8 cut(s) 207, 306, 463, 955, 985, 1178, 1365, 1401
CaiI CAGNNNCTG 1 cut(s) 1277
CfoI GCGC 1 cut(s) 578
Cfr13I GGNCC 3 cut(s) 128, 1186, 1315
ClaI ATCGAT 1 cut(s) 1122
Csp6I GTAC 3 cut(s) 66, 157, 1383
CspCI CAANNNNNGTGG 2 cut(s) 1345, 1380
CviAII CATG 6 cut(s) 81, 430, 703, 720, 1024, 1082
CviQI GTAC 3 cut(s) 66, 157, 1383
DdeI CTNAG 4 cut(s) 318, 373, 747, 1304
DpnI GATC 2 cut(s) 36, 441
DpnII GATC 2 cut(s) 34, 439
Eam1104I CTCTTC 2 cut(s) 516, 1103
EarI CTCTTC 2 cut(s) 516, 1103
EciI GGCGGA 1 cut(s) 428
Ecl136II GAGCTC 1 cut(s) 737
Eco130I CCWWGG 2 cut(s) 760, 1243
Eco24I GRGCYC 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 128, 1186
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 867, 1084
Eco91I GGTNACC 1 cut(s) 1091
EcoICRI GAGCTC 1 cut(s) 737
EcoO109I RGGNCCY 3 cut(s) 128, 1186, 1315
EcoO65I GGTNACC 1 cut(s) 1091
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 2 cut(s) 760, 1243
EcoT38I GRGCYC 1 cut(s) 739
ErhI CCWWGG 2 cut(s) 760, 1243
FaeI CATG 6 cut(s) 84, 433, 706, 723, 1027, 1085
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 1 cut(s) 776
FatI CATG 6 cut(s) 80, 429, 702, 719, 1023, 1081
FauNDI CATATG 1 cut(s) 934
FblI GTMKAC 3 cut(s) 382, 699, 1330
Fnu4HI GCNGC 9 cut(s) 836, 948, 951, 1020, 1075, 1078, 1220, 1278, 1435
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 9 cut(s) 836, 948, 951, 1020, 1075, 1078, 1220, 1278, 1435
FspBI CTAG 9 cut(s) 206, 216, 279, 614, 960, 977, 1148, 1169, 1203
GlaI GCGC 1 cut(s) 577
GluI GCNGC 9 cut(s) 836, 948, 951, 1020, 1075, 1078, 1220, 1278, 1435
GsuI CTGGAG 2 cut(s) 789, 887
HaeIII GGCC 2 cut(s) 630, 1317
HapII CCGG 2 cut(s) 243, 1442
HhaI GCGC 1 cut(s) 578
Hin1II CATG 6 cut(s) 84, 433, 706, 723, 1027, 1085
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 145, 1267
HpaII CCGG 2 cut(s) 243, 1442
HphI GGTGA 2 cut(s) 212, 688
Hpy166II GTNNAC 4 cut(s) 284, 383, 700, 1331
Hpy188I TCNGA 3 cut(s) 330, 537, 1133
Hpy188III TCNNGA 5 cut(s) 437, 455, 875, 904, 1294
Hpy8I GTNNAC 4 cut(s) 284, 383, 700, 1331
HpyAV CCTTC 4 cut(s) 453, 804, 989, 1305
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 844, 853, 1007, 1016, 1286, 1409
HpyF3I CTNAG 4 cut(s) 318, 373, 747, 1304
Hsp92II CATG 6 cut(s) 84, 433, 706, 723, 1027, 1085
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 34, 439
LmnI GCTCC 7 cut(s) 314, 647, 742, 980, 1147, 1229, 1247
Lsp1109I GCAGC 8 cut(s) 822, 962, 1006, 1061, 1089, 1231, 1264, 1446
MaeI CTAG 9 cut(s) 206, 216, 279, 614, 960, 977, 1148, 1169, 1203
MaeIII GTNAC 4 cut(s) 247, 1036, 1091, 1372
MalI GATC 2 cut(s) 36, 441
MboI GATC 2 cut(s) 34, 439
MboII GAAGA 8 cut(s) 17, 110, 118, 503, 705, 1090, 1121, 1124
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 286, 739, 1003
MluCI AATT 4 cut(s) 447, 467, 474, 552
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 243, 1442
MspR9I CCNGG 2 cut(s) 244, 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 7 cut(s) 314, 844, 853, 1007, 1016, 1286, 1409
NciI CCSGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 934
NdeII GATC 2 cut(s) 34, 439
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 6 cut(s) 84, 433, 706, 723, 1027, 1085
NlaIV GGNNCC 3 cut(s) 1143, 1187, 1316
NmuCI GTSAC 2 cut(s) 247, 1036
NspI RCATGY 1 cut(s) 723
PfeI GAWTC 2 cut(s) 145, 1267
PkrI GCNGC 9 cut(s) 837, 949, 952, 1021, 1076, 1079, 1221, 1279, 1436
PpuMI RGGWCCY 2 cut(s) 128, 1186
Psp124BI GAGCTC 1 cut(s) 739
Psp5II RGGWCCY 2 cut(s) 128, 1186
Psp6I CCWGG 1 cut(s) 487
PspEI GGTNACC 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 3 cut(s) 1143, 1187, 1316
PspPI GGNCC 3 cut(s) 128, 1186, 1315
PspPPI RGGWCCY 2 cut(s) 128, 1186
PstI CTGCAG 2 cut(s) 802, 1079
PstNI CAGNNNCTG 1 cut(s) 1277
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 3 cut(s) 67, 158, 1384
RsaNI GTAC 3 cut(s) 66, 157, 1383
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 739
SatI GCNGC 9 cut(s) 836, 948, 951, 1020, 1075, 1078, 1220, 1278, 1435
Sau3AI GATC 2 cut(s) 34, 439
Sau96I GGNCC 3 cut(s) 128, 1186, 1315
ScaI AGTACT 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 244, 489
SduI GDGCHC 3 cut(s) 286, 739, 1003
SfcI CTRYAG 2 cut(s) 798, 1075
SinI GGWCC 2 cut(s) 128, 1186
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 4 cut(s) 447, 467, 474, 552
SsiI CCGC 3 cut(s) 222, 413, 947
SspI AATATT 1 cut(s) 1425
SspMI CTAG 9 cut(s) 206, 216, 279, 614, 960, 977, 1148, 1169, 1203
SstI GAGCTC 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 242, 487
StyI CCWWGG 2 cut(s) 760, 1243
TaqI TCGA 4 cut(s) 176, 914, 1122, 1428
TasI AATT 4 cut(s) 447, 467, 474, 552
TatI WGTACW 2 cut(s) 156, 1382
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 2 cut(s) 145, 1267
TscAI CASTG 3 cut(s) 256, 358, 891
TseFI GTSAC 2 cut(s) 247, 1036
TseI GCWGC 8 cut(s) 835, 950, 1019, 1074, 1077, 1219, 1277, 1434
Tsp45I GTSAC 2 cut(s) 247, 1036
TspDTI ATGAA 6 cut(s) 418, 553, 657, 719, 987, 1122
TspRI CASTG 3 cut(s) 256, 358, 891
VneI GTGCAC 1 cut(s) 282
VpaK11BI GGWCC 2 cut(s) 128, 1186
XapI RAATTY 1 cut(s) 467
XceI RCATGY 1 cut(s) 723
XmiI GTMKAC 3 cut(s) 382, 699, 1330
XspI CTAG 9 cut(s) 206, 216, 279, 614, 960, 977, 1148, 1169, 1203
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.