Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Reverse (-)

9870252 .. 9872947

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGAAGGACTGTTATTACCAAGAGGCAAAGATCAACTAGATCAAAGAAAAGGGTCATGGCGGTGCTTCTTCCAAGAAGTGAAGAGGTTGAGTTGCATAGCAGGACCTATGGTTGCCGTGAATCTATCCCAGTTCTTGTTGCAGATAGTTTCGATGATGATGGTTGGTCACCTCGGTGGCCTAGCTCTCTCTAGCACCGCCATAGCCATCTCGCTAGCTAACGTCACTGGCTTTAGTCTTTTTTCAGGACTGGCTAGTGCGCTGGAAACTTTATGTGGACAAGCTTATGGAGCTGAACAATATCAGAAACATGGACTTCAAACTTACACTGCTATATTTTCTCTGAACTTAGTCTGTCTTCTTATATCTTTCATATGGTTTTATACGGAGGACTTGCTGATTTTCATGGGTCAAGATCCTTCAATTTCTTGTCAAGCTGGCAAATTCATAGTATTGCTTATTCCGGCTCTATTTGCTTGTGCAACTCTTCAACCACTCATTAGATACTTTCAGACACAAAGTCTGATACTTCCAATGCTTCTGAGCTCTTGTGTGACACTTATGTTCCATATTCCTCTCTGTTGGATCCTAGTGTTCAAGTCTGGACTGGATAACCTTGGAGGAGCATTAGCGATGAGCATTTCCTACTGGTTGTATGCGATTCTATTGGGATTATACATGAAATTTTCTTCTGCATGTTCAAAAACCAGAGCTCCAATTTCTAAGGAGGTGTTCCAAGGAATTGGAGAGTTCTTTCGCTTTGCCATCCCTTCTGCAGTAATGTTATGTCTTGAGTGGTGGTCATTTGAGCTGCTTATCTTGCTGTCTGGACTTTTACCAAATCCTACTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGACAATTTCGACACTCTATTCAATACCGAATGGAATTGGTGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGTAACCCGGAAGGTGCTCGCATAGCTACTTGCGCTGCCATGTTTCTTACAGTCGCAGAGACGAGTACAGTAGCCATAACCCTCTTTTGCTGCCGCCAAGTATTTGGTTACCTATTTACCAATGAGGAAGAAGTAATTGATTATGTCAGAATTATGGCTCCTCTACTTTGCCTATCTGTTATACTAGACAGCTTGCAAGGGGTCCTCTCAGGTATATCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAATCTTGGGGCATATTATTTATGTGGGATTCCAGTTGCTGCTACATTGGCTTTCTTGGTACTACTAAGAGGAAGGGGGCTTTGGATAGGAATACAAGTCGGTGCTTTTGTGCAAACCACTCTGCTAGCTTTTGTGACATGTTGTACAAACTGGGAAATGCAGGCAATTAAGGCAAGGGAGCGAATATTTGAGGGAAGCTCTCCAGTTGATAATGGATTGTGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

481

Amino Acids

52.3

Weight (kDa)

6.52

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	36 - 196	2.2e-28	MatE
MatE	PF01554	257 - 419	3.4e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	61, 198, 923, 1054
AclWI	GGATC	3 cut(s)	410, 580, 593
AcsI	RAATTY	2 cut(s)	443, 683
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	4 cut(s)	934, 1027, 1275, 1360
AflIII	ACRYGT	1 cut(s)	1352
AgsI	TTSAA	8 cut(s)	320, 423, 491, 598, 702, 854, 903, 945
AhdI	GACNNNNNGTC	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	1279, 1311
AleI	CACNNNNGTG	1 cut(s)	174
Alw21I	GWGCWC	3 cut(s)	548, 715, 979
Alw26I	GTCTC	2 cut(s)	881, 1013
AlwI	GGATC	3 cut(s)	410, 580, 593
AlwNI	CAGNNNCTG	1 cut(s)	1253
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	6 cut(s)	811, 926, 995, 1050, 1195, 1253
ApoI	RAATTY	2 cut(s)	443, 683
AspLEI	GCGC	2 cut(s)	262, 995
AspS9I	GGNCC	2 cut(s)	104, 1162
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	2 cut(s)	214, 1339
AvaII	GGWCC	2 cut(s)	104, 1162
BamHI	GGATCC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	548, 715
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	3 cut(s)	548, 715, 979
BbvI	GCAGC	6 cut(s)	798, 938, 982, 1037, 1207, 1240
BccI	CCATC	3 cut(s)	154, 215, 773
BceAI	ACGGC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	881, 1013
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	8 cut(s)	812, 924, 927, 996, 1051, 1054, 1196, 1254
BlsI	GCNGC	8 cut(s)	813, 925, 928, 997, 1052, 1055, 1197, 1255
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	1 cut(s)	968
Bme18I	GGWCC	2 cut(s)	104, 1162
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	104, 1162
BmiI	GGNNCC	3 cut(s)	587, 1119, 1163
BmrFI	CCNGG	1 cut(s)	968
BmrI	ACTGGG	2 cut(s)	124, 1375
BmtI	GCTAGC	2 cut(s)	218, 1343
BmuI	ACTGGG	2 cut(s)	124, 1375
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	1397, 1429
BpmI	CTGGAG	2 cut(s)	863, 1401
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	172, 616, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bse1I	ACTGG	8 cut(s)	130, 232, 255, 612, 653, 1247, 1370, 1418
BseDI	CCNNGG	3 cut(s)	172, 616, 736
BseGI	GGATG	2 cut(s)	765, 1190
BseMII	CTCAG	2 cut(s)	533, 1182
BseNI	ACTGG	8 cut(s)	130, 232, 255, 612, 653, 1247, 1370, 1418
BseRI	GAGGAG	2 cut(s)	636, 1110
BseXI	GCAGC	6 cut(s)	798, 938, 982, 1037, 1207, 1240
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	548, 715, 979
BsiSI	CCGG	2 cut(s)	464, 968
BsmAI	GTCTC	2 cut(s)	881, 1013
BsmBI	CGTCTC	1 cut(s)	1013
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	548, 715, 979
Bsp1407I	TGTACA	1 cut(s)	1358
Bsp143I	GATC	4 cut(s)	31, 40, 415, 585
BspACI	CCGC	4 cut(s)	61, 198, 923, 1054
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	534, 1181
BspLI	GGNNCC	3 cut(s)	587, 1119, 1163
BspMAI	CTGCAG	1 cut(s)	778
BspOI	GCTAGC	2 cut(s)	218, 1343
BspPI	GGATC	3 cut(s)	410, 580, 593
BsrGI	TGTACA	1 cut(s)	1358
BsrI	ACTGG	8 cut(s)	130, 232, 255, 612, 653, 1247, 1370, 1418
BssECI	CCNNGG	3 cut(s)	172, 616, 736
BssMI	GATC	4 cut(s)	31, 40, 415, 585
BssT1I	CCWWGG	2 cut(s)	616, 736
Bst4CI	ACNGT	3 cut(s)	12, 1012, 1030
Bst6I	CTCTTC	2 cut(s)	77, 492
BstAUI	TGTACA	1 cut(s)	1358
BstC8I	GCNNGC	6 cut(s)	216, 439, 979, 1154, 1341, 1377
BstDEI	CTNAG	5 cut(s)	349, 542, 723, 1168, 1280
BstEII	GGTNACC	3 cut(s)	167, 962, 1067
BstF5I	GGATG	2 cut(s)	765, 1190
BstHHI	GCGC	2 cut(s)	262, 995
BstKTI	GATC	4 cut(s)	34, 43, 418, 588
BstMAI	GTCTC	2 cut(s)	881, 1013
BstMBI	GATC	4 cut(s)	31, 40, 415, 585
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 473, 820, 983, 992, 1262, 1385
BstNSI	RCATGY	2 cut(s)	699, 1356
BstPI	GGTNACC	3 cut(s)	167, 962, 1067
BstSCI	CCNGG	1 cut(s)	966
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	6 cut(s)	798, 938, 982, 1037, 1207, 1240
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	415, 585
BstXI	CCANNNNNNTGG	2 cut(s)	743, 1064
BstYI	RGATCY	2 cut(s)	415, 585
BsuRI	GGCC	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	2 cut(s)	765, 1190
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	225, 327, 867
Cac8I	GCNNGC	6 cut(s)	216, 439, 979, 1154, 1341, 1377
CaiI	CAGNNNCTG	1 cut(s)	1253
CfoI	GCGC	2 cut(s)	262, 995
Cfr13I	GGNCC	2 cut(s)	104, 1162
Csp6I	GTAC	4 cut(s)	933, 1026, 1274, 1359
CviAII	CATG	7 cut(s)	57, 311, 406, 679, 696, 1000, 1353
CviQI	GTAC	4 cut(s)	933, 1026, 1274, 1359
DdeI	CTNAG	5 cut(s)	349, 542, 723, 1168, 1280
DpnI	GATC	4 cut(s)	33, 42, 417, 587
DpnII	GATC	4 cut(s)	31, 40, 415, 585
DriI	GACNNNNNGTC	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	77, 492
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	2 cut(s)	77, 492
Ecl136II	GAGCTC	2 cut(s)	546, 713
Eco130I	CCWWGG	2 cut(s)	616, 736
Eco24I	GRGCYC	2 cut(s)	548, 715
Eco47I	GGWCC	2 cut(s)	104, 1162
Eco53kI	GAGCTC	2 cut(s)	546, 713
Eco57I	CTGAAG	1 cut(s)	843
Eco91I	GGTNACC	3 cut(s)	167, 962, 1067
EcoICRI	GAGCTC	2 cut(s)	546, 713
EcoO109I	RGGNCCY	2 cut(s)	104, 1162
EcoO65I	GGTNACC	3 cut(s)	167, 962, 1067
EcoT14I	CCWWGG	2 cut(s)	616, 736
EcoT38I	GRGCYC	2 cut(s)	548, 715
ErhI	CCWWGG	2 cut(s)	616, 736
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	7 cut(s)	60, 314, 409, 682, 699, 1003, 1356
FatI	CATG	7 cut(s)	56, 310, 405, 678, 695, 999, 1352
FauNDI	CATATG	1 cut(s)	374
Fnu4HI	GCNGC	8 cut(s)	812, 924, 927, 996, 1051, 1054, 1196, 1254
FokI	GGATG	2 cut(s)	752, 1197
FriOI	GRGCYC	2 cut(s)	548, 715
Fsp4HI	GCNGC	8 cut(s)	812, 924, 927, 996, 1051, 1054, 1196, 1254
GlaI	GCGC	2 cut(s)	261, 994
GluI	GCNGC	8 cut(s)	812, 924, 927, 996, 1051, 1054, 1196, 1254
GsuI	CTGGAG	2 cut(s)	863, 1401
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	464, 968
HhaI	GCGC	2 cut(s)	262, 995
Hin1II	CATG	7 cut(s)	60, 314, 409, 682, 699, 1003, 1356
Hin6I	GCGC	2 cut(s)	260, 993
HinP1I	GCGC	2 cut(s)	260, 993
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	121, 661, 1243
HpaII	CCGG	2 cut(s)	464, 968
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	6 cut(s)	306, 345, 513, 525, 543, 1109
Hpy188III	TCNNGA	8 cut(s)	246, 413, 603, 791, 828, 851, 880, 1179
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	429, 780, 965, 1281
HpyCH4III	ACNGT	3 cut(s)	12, 1012, 1030
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	8 cut(s)	96, 142, 482, 695, 776, 1156, 1327, 1375
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 473, 820, 983, 992, 1262, 1385
HpyF3I	CTNAG	5 cut(s)	349, 542, 723, 1168, 1280
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	7 cut(s)	60, 314, 409, 682, 699, 1003, 1356
HspAI	GCGC	2 cut(s)	260, 993
Kzo9I	GATC	4 cut(s)	31, 40, 415, 585
LmnI	GCTCC	6 cut(s)	290, 623, 718, 956, 1123, 1393
Lsp1109I	GCAGC	6 cut(s)	798, 938, 982, 1037, 1207, 1240
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	6 cut(s)	167, 223, 553, 962, 1067, 1348
MalI	GATC	4 cut(s)	33, 42, 417, 587
MboI	GATC	4 cut(s)	31, 40, 415, 585
MboII	GAAGA	6 cut(s)	61, 94, 350, 479, 681, 1100
MflI	RGATCY	2 cut(s)	415, 585
MhlI	GDGCHC	3 cut(s)	548, 715, 979
MmeI	TCCRAC	1 cut(s)	563
MseI	TTAA	1 cut(s)	1383
MslI	CAYNNNNRTG	2 cut(s)	61, 174
MspI	CCGG	2 cut(s)	464, 968
MspR9I	CCNGG	1 cut(s)	968
MwoI	GCNNNNNNNGC	7 cut(s)	290, 473, 820, 983, 992, 1262, 1385
NciI	CCSGG	1 cut(s)	968
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	4 cut(s)	31, 40, 415, 585
NheI	GCTAGC	2 cut(s)	214, 1339
NlaIII	CATG	7 cut(s)	60, 314, 409, 682, 699, 1003, 1356
NlaIV	GGNNCC	3 cut(s)	587, 1119, 1163
NmuCI	GTSAC	4 cut(s)	167, 223, 553, 1348
NspI	RCATGY	2 cut(s)	699, 1356
OliI	CACNNNNGTG	1 cut(s)	174
PciI	ACATGT	1 cut(s)	1352
PfeI	GAWTC	3 cut(s)	121, 661, 1243
PkrI	GCNGC	8 cut(s)	813, 925, 928, 997, 1052, 1055, 1197, 1255
PpuMI	RGGWCCY	2 cut(s)	104, 1162
PscI	ACATGT	1 cut(s)	1352
Psp124BI	GAGCTC	2 cut(s)	548, 715
Psp5II	RGGWCCY	2 cut(s)	104, 1162
PspEI	GGTNACC	3 cut(s)	167, 962, 1067
PspN4I	GGNNCC	3 cut(s)	587, 1119, 1163
PspPI	GGNCC	2 cut(s)	104, 1162
PspPPI	RGGWCCY	2 cut(s)	104, 1162
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	1253
PsuI	RGATCY	2 cut(s)	415, 585
RsaI	GTAC	4 cut(s)	934, 1027, 1275, 1360
RsaNI	GTAC	4 cut(s)	933, 1026, 1274, 1359
RseI	CAYNNNNRTG	2 cut(s)	61, 174
SacI	GAGCTC	2 cut(s)	548, 715
SaqAI	TTAA	1 cut(s)	1383
SatI	GCNGC	8 cut(s)	812, 924, 927, 996, 1051, 1054, 1196, 1254
Sau3AI	GATC	4 cut(s)	31, 40, 415, 585
Sau96I	GGNCC	2 cut(s)	104, 1162
ScaI	AGTACT	1 cut(s)	934
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	3 cut(s)	548, 715, 979
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	2 cut(s)	104, 1162
SmiMI	CAYNNNNRTG	2 cut(s)	61, 174
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SsiI	CCGC	4 cut(s)	61, 198, 923, 1054
SspI	AATATT	1 cut(s)	1401
SstI	GAGCTC	2 cut(s)	548, 715
StyD4I	CCNGG	1 cut(s)	966
StyI	CCWWGG	2 cut(s)	616, 736
TaaI	ACNGT	3 cut(s)	12, 1012, 1030
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	152, 890
TatI	WGTACW	3 cut(s)	932, 1025, 1358
TauI	GCSGC	2 cut(s)	926, 1056
TfiI	GAWTC	3 cut(s)	121, 661, 1243
Tru1I	TTAA	1 cut(s)	1383
Tru9I	TTAA	1 cut(s)	1383
TscAI	CASTG	3 cut(s)	232, 334, 867
TseFI	GTSAC	4 cut(s)	167, 223, 553, 1348
TseI	GCWGC	6 cut(s)	811, 926, 995, 1050, 1195, 1253
Tsp45I	GTSAC	4 cut(s)	167, 223, 553, 1348
TspDTI	ATGAA	5 cut(s)	361, 394, 436, 695, 963
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	232, 334, 867
VpaK11BI	GGWCC	2 cut(s)	104, 1162
XapI	RAATTY	2 cut(s)	443, 683
XbaI	TCTAGA	1 cut(s)	1178
XceI	RCATGY	2 cut(s)	699, 1356
ZrmI	AGTACT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.