FvH4_4g26361

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27773034 .. 27775291
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26361.t1

Sequence Viewer

Length: 1365 bp
ATGGAAGAGAGCTTGTTAACATTGCCAAAAGAAGCAAAAGATTCAAGAAATTTTAGTAGTACTAGTGCTACTACTACTTTGACATGGGCTTATTTCTTTATTGAAGTGAAGAGGCAATGTTACATAGCAGGACCTATGGTTGCCGTGATTCTATCCCAGAACTTGTTTCGCGTGGTTTCGATGATGATGGTTGGTCACTTGGGTGAGCTAGCTCTCTCTAGCACCTCCATTGCCATCTCCCTCTCTGGAGTCACCGGCTTCAGTGTCTTTATAGGAATGGCCAGTGGACTGGAAACAATATGTGGGCAAGCATATGGAGCTAAGCAATATCAGAAACTTGGACTTCAAACTTACACTGCTATAATTTCTCTCAACTTAGTTTGTCTCCCCTTATCTTTGTTATGGATATATATGGAGGACTTGCTGATTTTCATGGGTCAAGATCCTCTCATTTCTCGCGAAGCTGGAAAGTTTACTATCTGGCTTATTCCAGCTCTCTTTGCTTATGCAACTCTTCAACCACTCATCAGATACTTTCAAACACAAAGTTTGATAACTCCTATGCTCCTGAGCTCTTGCGCGACCCTTTTGTTCCATATTCCTCTCTGTTGGGTTCTAGTATTCAAGTCTGGACTGGATAACCTTGGAGGGGCATTGGCAATTAGTATTTCATATTGGTTGAATGTGATTTTACTTGTATTGTACATGAAGTACTCTTCAGCTTGTTCACTAACCAGAGCTCCAGTTACTATGGAAGTATTCCATGGAATGAGAGAGTTCTTTTACTTTGCCATCCCTTCTACAACCATTTCAACACTTTATGCAATACCTTATGGCTTTGGTGCTGCAGCAAGTACTAGAGTTGCAAATGAAATGGGAGCTGGTAACTCAGAAGGCGCTCGTATAGCTGCGCAGGTTGCATTGCTTCTTGCAGTCACAGAGACAAGCATAGAAACAACAACCCTCTTTGCCTTGAGGCATTCGTATGGTTACACATTTAGCAATGAGAAACAAGTCATCGATTACGTCATATCAATGGCGCCTCTAGTGTGTCTGTCTCTTTCACTAGACAGCCTGCAAGGGGTCCTTACAGGTATTGCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATTAACCTTGGATCATTTTATCTTTGTGGAATTCCAGTTGCTGCAATATTGGCTTTCTGGTTAGAGCTGAGAGGGAGAGGCCTTTGGATTGGAATACAACTCGGTTCTTTGGTGCAGACCATATTTCTTTCTTTTGTAACAACTTGTACAAACTGGGAAATGCAGGCAAGTAAGGCAAGGGAGAGGGTATTCCAGGGAGGCTCATCAGGAGATGTTGGATTCTGCCATTGA

Protein Analysis

455

Amino Acids

49.62

Weight (kDa)

6.97

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 45 - 205 5.9e-31 MatE
MatE PF01554 267 - 393 1.6e-19 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 1039
AccII CGCG 3 cut(s) 171, 459, 581
AclWI GGATC 2 cut(s) 437, 1153
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 49, 1164
AcuI CTGAAG 2 cut(s) 244, 702
AcyI GRCGYC 1 cut(s) 1040
AfaI GTAC 5 cut(s) 61, 704, 713, 856, 1282
AfiI CCNNNNNNNGG 2 cut(s) 649, 1081
AgsI TTSAA 8 cut(s) 45, 104, 347, 518, 539, 625, 682, 813
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 1326
AleI CACNNNNGTG 1 cut(s) 201
Alw21I GWGCWC 2 cut(s) 575, 742
Alw26I GTCTC 3 cut(s) 389, 935, 1062
AlwI GGATC 2 cut(s) 437, 1153
AlwNI CAGNNNCTG 1 cut(s) 1175
AoxI GGCC 2 cut(s) 279, 1213
ApeKI GCWGC 5 cut(s) 845, 848, 908, 1117, 1175
ApoI RAATTY 2 cut(s) 49, 1164
AspLEI GCGC 4 cut(s) 581, 899, 913, 1042
AspS9I GGNCC 2 cut(s) 131, 1084
AsuHPI GGTGA 2 cut(s) 215, 244
AsuNHI GCTAGC 1 cut(s) 208
AvaII GGWCC 2 cut(s) 131, 1084
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 1039
BanII GRGCYC 2 cut(s) 575, 742
Bbv12I GWGCWC 2 cut(s) 575, 742
BbvI GCAGC 5 cut(s) 832, 860, 895, 1129, 1162
BccI CCATC 3 cut(s) 181, 242, 800
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 1328
BcoDI GTCTC 3 cut(s) 389, 935, 1062
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 8 cut(s) 63, 209, 219, 617, 858, 1046, 1067, 1101
BfmI CTRYAG 1 cut(s) 846
BfoI RGCGCY 2 cut(s) 900, 1043
BfuAI ACCTGC 1 cut(s) 904
BisI GCNGC 5 cut(s) 846, 849, 909, 1118, 1176
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 847, 850, 910, 1119, 1177
BmcAI AGTACT 3 cut(s) 61, 713, 856
Bme1390I CCNGG 1 cut(s) 1328
Bme18I GGWCC 2 cut(s) 131, 1084
BmgT120I GGNCC 2 cut(s) 131, 1084
BmiI GGNNCC 2 cut(s) 1041, 1085
BmrFI CCNGG 1 cut(s) 1328
BmrI ACTGGG 1 cut(s) 1297
BmtI GCTAGC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 1297
BpmI CTGGAG 2 cut(s) 267, 726
Bpu10I CCTNAGC 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 994
Bsa29I ATCGAT 1 cut(s) 1020
BsaHI GRCGYC 1 cut(s) 1040
BsaJI CCNNGG 4 cut(s) 643, 763, 1141, 1327
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 1081
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 6 cut(s) 282, 294, 639, 743, 1169, 1292
Bse3DI GCAATG 5 cut(s) 20, 122, 228, 920, 1009
BseBI CCWGG 1 cut(s) 1328
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 4 cut(s) 643, 763, 1141, 1327
BseGI GGATG 2 cut(s) 792, 1112
BseLI CCNNNNNNNGG 2 cut(s) 649, 1081
BseMI GCAATG 5 cut(s) 20, 122, 228, 920, 1009
BseMII CTCAG 3 cut(s) 560, 903, 1193
BseNI ACTGG 6 cut(s) 282, 294, 639, 743, 1169, 1292
BseXI GCAGC 5 cut(s) 832, 860, 895, 1129, 1162
BsgI GTGCAG 1 cut(s) 1268
Bsh1236I CGCG 3 cut(s) 171, 459, 581
BshFI GGCC 2 cut(s) 281, 1215
BshNI GGYRCC 1 cut(s) 1039
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 575, 742
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 649, 1081
BsmAI GTCTC 3 cut(s) 389, 935, 1062
BsmI GAATGC 1 cut(s) 979
BsnI GGCC 2 cut(s) 281, 1215
Bsp1286I GDGCHC 2 cut(s) 575, 742
Bsp1407I TGTACA 2 cut(s) 702, 1280
Bsp143I GATC 2 cut(s) 442, 1145
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 763
Bsp68I TCGCGA 1 cut(s) 459
BspANI GGCC 2 cut(s) 281, 1215
BspCNI CTCAG 3 cut(s) 561, 902, 1194
BspDI ATCGAT 1 cut(s) 1020
BspFNI CGCG 3 cut(s) 171, 459, 581
BspLI GGNNCC 2 cut(s) 1041, 1085
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 904
BspOI GCTAGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 437, 1153
BspT107I GGYRCC 1 cut(s) 1039
BsrDI GCAATG 5 cut(s) 20, 122, 228, 920, 1009
BsrFI RCCGGY 1 cut(s) 254
BsrGI TGTACA 2 cut(s) 702, 1280
BsrI ACTGG 6 cut(s) 282, 294, 639, 743, 1169, 1292
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 643, 763, 1141, 1327
BssMI GATC 2 cut(s) 442, 1145
BssNI GRCGYC 1 cut(s) 1040
BssT1I CCWWGG 3 cut(s) 643, 763, 1141
Bst2UI CCWGG 1 cut(s) 1328
Bst6I CTCTTC 3 cut(s) 104, 519, 721
BstACI GRCGYC 1 cut(s) 1040
BstAUI TGTACA 2 cut(s) 702, 1280
BstC8I GCNNGC 4 cut(s) 210, 309, 1076, 1299
BstDEI CTNAG 5 cut(s) 321, 376, 569, 889, 1202
BstDSI CCRYGG 1 cut(s) 763
BstF5I GGATG 2 cut(s) 792, 1112
BstFNI CGCG 3 cut(s) 171, 459, 581
BstH2I RGCGCY 2 cut(s) 900, 1043
BstHHI GCGC 4 cut(s) 581, 899, 913, 1042
BstKTI GATC 2 cut(s) 445, 1148
BstMAI GTCTC 3 cut(s) 389, 935, 1062
BstMBI GATC 2 cut(s) 442, 1145
BstMWI GCNNNNNNNGC 6 cut(s) 317, 500, 905, 917, 1184, 1307
BstNI CCWGG 1 cut(s) 1328
BstSCI CCNGG 1 cut(s) 1326
BstSFI CTRYAG 1 cut(s) 846
BstUI CGCG 3 cut(s) 171, 459, 581
BstV1I GCAGC 5 cut(s) 832, 860, 895, 1129, 1162
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 1020
BsuRI GGCC 2 cut(s) 281, 1215
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 792, 1112
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 268, 289, 354
BtuMI TCGCGA 1 cut(s) 459
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 4 cut(s) 210, 309, 1076, 1299
CaiI CAGNNNCTG 1 cut(s) 1175
CfoI GCGC 4 cut(s) 581, 899, 913, 1042
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 131, 1084
ClaI ATCGAT 1 cut(s) 1020
Csp6I GTAC 5 cut(s) 60, 703, 712, 855, 1281
CviAII CATG 4 cut(s) 84, 433, 706, 764
CviQI GTAC 5 cut(s) 60, 703, 712, 855, 1281
DdeI CTNAG 5 cut(s) 321, 376, 569, 889, 1202
DinI GGCGCC 1 cut(s) 1041
DpnI GATC 2 cut(s) 444, 1147
DpnII GATC 2 cut(s) 442, 1145
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 3 cut(s) 104, 519, 721
EarI CTCTTC 3 cut(s) 104, 519, 721
Ecl136II GAGCTC 2 cut(s) 573, 740
Eco130I CCWWGG 3 cut(s) 643, 763, 1141
Eco147I AGGCCT 1 cut(s) 1215
Eco24I GRGCYC 2 cut(s) 575, 742
Eco47I GGWCC 2 cut(s) 131, 1084
Eco53kI GAGCTC 2 cut(s) 573, 740
Eco57I CTGAAG 2 cut(s) 244, 702
EcoICRI GAGCTC 2 cut(s) 573, 740
EcoO109I RGGNCCY 2 cut(s) 131, 1084
EcoRI GAATTC 1 cut(s) 1164
EcoRII CCWGG 1 cut(s) 1326
EcoT14I CCWWGG 3 cut(s) 643, 763, 1141
EcoT38I GRGCYC 2 cut(s) 575, 742
EgeI GGCGCC 1 cut(s) 1041
EheI GGCGCC 1 cut(s) 1041
ErhI CCWWGG 3 cut(s) 643, 763, 1141
FaeI CATG 4 cut(s) 87, 436, 709, 767
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FatI CATG 4 cut(s) 83, 432, 705, 763
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 5 cut(s) 846, 849, 909, 1118, 1176
FokI GGATG 2 cut(s) 779, 1119
FriOI GRGCYC 2 cut(s) 575, 742
Fsp4HI GCNGC 5 cut(s) 846, 849, 909, 1118, 1176
FspBI CTAG 8 cut(s) 63, 209, 219, 617, 858, 1046, 1067, 1101
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 4 cut(s) 580, 898, 912, 1041
GluI GCNGC 5 cut(s) 846, 849, 909, 1118, 1176
GsuI CTGGAG 2 cut(s) 267, 726
HaeII RGCGCY 2 cut(s) 900, 1043
HaeIII GGCC 2 cut(s) 281, 1215
HapII CCGG 1 cut(s) 255
HhaI GCGC 4 cut(s) 581, 899, 913, 1042
Hin1I GRCGYC 1 cut(s) 1040
Hin1II CATG 4 cut(s) 87, 436, 709, 767
Hin6I GCGC 4 cut(s) 579, 897, 911, 1040
HinP1I GCGC 4 cut(s) 579, 897, 911, 1040
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 4 cut(s) 41, 148, 249, 1353
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 215, 244
Hpy166II GTNNAC 4 cut(s) 18, 287, 474, 728
Hpy188I TCNGA 3 cut(s) 333, 530, 892
Hpy188III TCNNGA 7 cut(s) 45, 246, 440, 458, 568, 630, 1341
Hpy8I GTNNAC 4 cut(s) 18, 287, 474, 728
HpyAV CCTTC 2 cut(s) 807, 887
HpyCH4IV ACGT 1 cut(s) 1026
HpyF10VI GCNNNNNNNGC 6 cut(s) 317, 500, 905, 917, 1184, 1307
HpyF3I CTNAG 5 cut(s) 321, 376, 569, 889, 1202
HpySE526I ACGT 1 cut(s) 1026
Hsp92I GRCGYC 1 cut(s) 1040
Hsp92II CATG 4 cut(s) 87, 436, 709, 767
HspAI GCGC 4 cut(s) 579, 897, 911, 1040
KasI GGCGCC 1 cut(s) 1039
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 442, 1145
LmnI GCTCC 4 cut(s) 317, 570, 745, 878
Lsp1109I GCAGC 5 cut(s) 832, 860, 895, 1129, 1162
MaeI CTAG 8 cut(s) 63, 209, 219, 617, 858, 1046, 1067, 1101
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 8 cut(s) 119, 194, 250, 745, 884, 934, 989, 1270
MalI GATC 2 cut(s) 444, 1147
MboI GATC 2 cut(s) 442, 1145
MboII GAAGA 4 cut(s) 17, 121, 506, 708
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 2 cut(s) 575, 742
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 4 cut(s) 49, 363, 660, 1164
MluNI TGGCCA 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 1040
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 1330
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 17, 1137
MslI CAYNNNNRTG 3 cut(s) 201, 984, 1034
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 1328
Mva1269I GAATGC 1 cut(s) 979
MvaI CCWGG 1 cut(s) 1328
MvnI CGCG 3 cut(s) 171, 459, 581
MwoI GCNNNNNNNGC 6 cut(s) 317, 500, 905, 917, 1184, 1307
NarI GGCGCC 1 cut(s) 1040
NcoI CCATGG 1 cut(s) 763
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 442, 1145
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 4 cut(s) 87, 436, 709, 767
NlaIV GGNNCC 2 cut(s) 1041, 1085
NmuCI GTSAC 3 cut(s) 194, 250, 934
NruI TCGCGA 1 cut(s) 459
NsbI TGCGCA 1 cut(s) 912
OliI CACNNNNGTG 1 cut(s) 201
PceI AGGCCT 1 cut(s) 1215
PctI GAATGC 1 cut(s) 979
PfeI GAWTC 3 cut(s) 41, 148, 1353
PkrI GCNGC 5 cut(s) 847, 850, 910, 1119, 1177
PleI GAGTC 1 cut(s) 257
PluTI GGCGCC 1 cut(s) 1043
PpsI GAGTC 1 cut(s) 257
PpuMI RGGWCCY 2 cut(s) 131, 1084
Psp124BI GAGCTC 2 cut(s) 575, 742
Psp5II RGGWCCY 2 cut(s) 131, 1084
Psp6I CCWGG 1 cut(s) 1326
PspGI CCWGG 1 cut(s) 1326
PspN4I GGNNCC 2 cut(s) 1041, 1085
PspPI GGNCC 2 cut(s) 131, 1084
PspPPI RGGWCCY 2 cut(s) 131, 1084
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 1175
PsuI RGATCY 1 cut(s) 442
RruI TCGCGA 1 cut(s) 459
RsaI GTAC 5 cut(s) 61, 704, 713, 856, 1282
RsaNI GTAC 5 cut(s) 60, 703, 712, 855, 1281
RseI CAYNNNNRTG 3 cut(s) 201, 984, 1034
SacI GAGCTC 2 cut(s) 575, 742
SaqAI TTAA 2 cut(s) 17, 1137
SatI GCNGC 5 cut(s) 846, 849, 909, 1118, 1176
Sau3AI GATC 2 cut(s) 442, 1145
Sau96I GGNCC 2 cut(s) 131, 1084
ScaI AGTACT 3 cut(s) 61, 713, 856
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 1328
SduI GDGCHC 2 cut(s) 575, 742
SfcI CTRYAG 1 cut(s) 846
SfoI GGCGCC 1 cut(s) 1041
SinI GGWCC 2 cut(s) 131, 1084
SmiMI CAYNNNNRTG 3 cut(s) 201, 984, 1034
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 49, 363, 660, 1164
SseBI AGGCCT 1 cut(s) 1215
SspDI GGCGCC 1 cut(s) 1039
SspI AATATT 1 cut(s) 1182
SspMI CTAG 8 cut(s) 63, 209, 219, 617, 858, 1046, 1067, 1101
SstI GAGCTC 2 cut(s) 575, 742
StuI AGGCCT 1 cut(s) 1215
StyD4I CCNGG 1 cut(s) 1326
StyI CCWWGG 3 cut(s) 643, 763, 1141
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 2 cut(s) 179, 1020
TasI AATT 4 cut(s) 49, 363, 660, 1164
TatI WGTACW 5 cut(s) 59, 702, 711, 854, 1280
TfiI GAWTC 3 cut(s) 41, 148, 1353
Tru1I TTAA 2 cut(s) 17, 1137
Tru9I TTAA 2 cut(s) 17, 1137
TscAI CASTG 3 cut(s) 268, 289, 361
TseFI GTSAC 3 cut(s) 194, 250, 934
TseI GCWGC 5 cut(s) 845, 848, 908, 1117, 1175
Tsp45I GTSAC 3 cut(s) 194, 250, 934
TspDTI ATGAA 4 cut(s) 421, 660, 722, 885
TspRI CASTG 3 cut(s) 268, 289, 361
VpaK11BI GGWCC 2 cut(s) 131, 1084
XapI RAATTY 2 cut(s) 49, 1164
XspI CTAG 8 cut(s) 63, 209, 219, 617, 858, 1046, 1067, 1101
ZrmI AGTACT 3 cut(s) 61, 713, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.